View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20174_low_32 (Length: 277)
Name: NF20174_low_32
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_low_32 |
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| [»] scaffold0094 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 31242931 - 31242671
Alignment:
| Q |
1 |
atcaccggtgagaatgaggatgattatctacagcgcgaacctgttgtcttagaaccaattgatttttccaatgttgatagcctgttgggtggacatgtta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31242931 |
atcaccggtgagaatgaggatgattatctacagcgcgaacctgttgtcttagaaccaattgatttttccaatgttgatagcctattgggtggacatgtta |
31242832 |
T |
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| Q |
101 |
tggcaaatgctaatttatcgacccaattagtgcaagatcaactacaagagtttataccttcccacccagaggtaactactaatcgtgcctagtactaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31242831 |
tggcaaatgctaatttatcgacccaattagtgcaagatcaactacaagagtttataccttcccacccagaggtaactactaatcgtgcctagtactaaca |
31242732 |
T |
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| Q |
201 |
caagattcaatgtgcatgtgtttattgaattgttctaatacctaatttactttttagtttg |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31242731 |
caagattcaatgtgcatgtgtttattgaattgttctaatacctaatttactttttagtttg |
31242671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 8 - 261
Target Start/End: Original strand, 17215565 - 17215836
Alignment:
| Q |
8 |
gtgagaatgaggatgattatctacagcgcgaacctgttgtcttagaaccaattgatttttccaatgttgatagcctgttgggtggacatgttatggcaaa |
107 |
Q |
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|||||||||| ||||||||| |||| ||||||||| ||||| ||||| ||||||||| ||||||||||||||| |||||||||||||||||||| |||| |
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| T |
17215565 |
gtgagaatgatgatgattatatacatcgcgaacctattgtcctagaaagaattgatttgtccaatgttgatagcatgttgggtggacatgttatgccaaa |
17215664 |
T |
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| Q |
108 |
tgctaatttatcgacccaattagtgcaagatcaa------ctacaagagtttataccttcccacccag------------aggtaactactaatcgtgcc |
189 |
Q |
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| T |
17215665 |
tgctaatttatcgaaccaattagtgcaagatcaacttgcgctgcaagaatttatacctttccacccagaagctttgggtcaggtaactacttttcgtgcc |
17215764 |
T |
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| Q |
190 |
tagtactaacacaagattcaatgtgcatgtgtttattgaattgttctaatacctaatttactttttagtttg |
261 |
Q |
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||||||||| | || || |||||||||||| ||| ||| ||| |||||||| ||| |||| ||||||||||| |
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| T |
17215765 |
tagtactaatataaaatgcaatgtgcatgtatttcttgtattcttctaatatctattttaatttttagtttg |
17215836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 17214934 - 17214766
Alignment:
| Q |
8 |
gtgagaatgaggatgattatctacagcgcgaacctgttgtcttagaaccaattgatttttccaatgttgatagcctgttgggtggacatgttatggcaaa |
107 |
Q |
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|||||||||| ||||||||| |||| ||||||| | |||||||| || ||||||||| ||||||||||||||||| |||||||||||||||||| |||| |
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| T |
17214934 |
gtgagaatgatgatgattatatacatcgcgaacatattgtcttacaaagaattgatttgtccaatgttgatagcctcttgggtggacatgttatgccaaa |
17214835 |
T |
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| Q |
108 |
tgctaatttatcgacccaattagtgcaagatcaa------ctacaagagtttataccttcccacccaga |
170 |
Q |
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|||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| |
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| T |
17214834 |
tgctaatttatcgacccaattagtgctagatcaacttgccctacaagaatttataccttcccacccaga |
17214766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 17214740 - 17214670
Alignment:
| Q |
184 |
cgtgcctagtactaacacaagattcaatgtgcatgtgtttattgaattgttctaatacctaatttactttt |
254 |
Q |
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||||| |||||||||||||| || |||| ||||||| ||| ||| ||| |||||||| ||| ||||||||| |
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| T |
17214740 |
cgtgcttagtactaacacaaaatgcaatctgcatgtatttcttgtattcttctaatatctattttactttt |
17214670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 10238 - 10510
Alignment:
| Q |
1 |
atcaccggtgagaatgaggatgattatctacagcgcgaacctgttgtcttagaaccaattgatttttccaatgttgatagcctgttgggtggacatgtta |
100 |
Q |
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||||| ||||||||||| ||||||||| |||| | ||||||| |||| |||||| ||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
10238 |
atcactggtgagaatgatgatgattatatacatcacgaacctattgtgttagaaagaattgatttgtccaatgttgatagtctgttgggtggacatgtta |
10337 |
T |
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| Q |
101 |
tggcaaatgctaatttatcgacccaattagtgcaagatcaa------ctacaagagtttataccttcccacccag------------aggtaactactaa |
182 |
Q |
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|| | ||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| |
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| T |
10338 |
tgccgaatactaatttatcgacccaattagtgcaagatcaacctgccctacaagaatttataccttcccacccagaagctttgggttaggtaactacttt |
10437 |
T |
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| Q |
183 |
tcgtgcctagtactaacacaagattcaatgtgcatgtgtttattgaattgttctaatacctaatttacttttt |
255 |
Q |
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|| ||||||||| |||||||| || |||||||||||| ||| ||| ||| | |||||| ||| |||||||||| |
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| T |
10438 |
tcatgcctagtattaacacaaaatgcaatgtgcatgtatttcttgtattctcctaatatctattttacttttt |
10510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 9642 - 9370
Alignment:
| Q |
1 |
atcaccggtgagaatgaggatgattatctacagcgcgaacctgttgtcttagaaccaattgatttttccaatgttgatagcctgttgggtggacatgtta |
100 |
Q |
| |
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||||| ||||||||||| ||||||||| |||| | ||||||| |||| |||||| ||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
9642 |
atcactggtgagaatgatgatgattatatacatcacgaacctattgtgttagaaagaattgatttgtccaatgttgatagtctgttgggtggacatgtta |
9543 |
T |
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| Q |
101 |
tggcaaatgctaatttatcgacccaattagtgcaagatcaa------ctacaagagtttataccttcccacccag------------aggtaactactaa |
182 |
Q |
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|| | ||| ||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||| ||||||||||| |
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| T |
9542 |
tgccgaatactaatttatcgacccaatttgtgcaagatcaacctgccctacaagaatttataccttcccacccagaagctttgggttaggtaactacttt |
9443 |
T |
|
| Q |
183 |
tcgtgcctagtactaacacaagattcaatgtgcatgtgtttattgaattgttctaatacctaatttacttttt |
255 |
Q |
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|| ||||||||| |||||||| || |||||||||||| ||| ||| ||| | |||||| ||| |||||||||| |
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| T |
9442 |
tcatgcctagtattaacacaaaatgcaatgtgcatgtatttcttgtattctcctaatatctattttacttttt |
9370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 171
Target Start/End: Complemental strand, 7206396 - 7206233
Alignment:
| Q |
14 |
atgaggatgattatctacagcgcgaacctgttgtcttagaaccaattgatttttccaatgttgatagcctgttgggtggacatgttatggcaaatgctaa |
113 |
Q |
| |
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||||| |||||||| |||| | ||||||| ||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
7206396 |
atgagaatgattatatacaacacgaacctattgtcttagaaagaattgatttttccattgtagatagcctgttgggtggacatgttatgtcaaatgctaa |
7206297 |
T |
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| Q |
114 |
tttatcgacccaattagtgcaagatcaa------ctacaagagtttataccttcccacccagag |
171 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||| |
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| T |
7206296 |
tttatcgacccaattagtgcaagatcaacctgcgctacaagaatttataccttcccatccagag |
7206233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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