View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20174_low_35 (Length: 269)
Name: NF20174_low_35
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 42806393 - 42806627
Alignment:
| Q |
15 |
cagatttatatggtggcgataacatcaaactattcacttattggacaatggattcacaattcgattgccctgttttgttctttcttttaattcattataa |
114 |
Q |
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| T |
42806393 |
cagatttatatggtggcgataacatcaaactattcacttattggacagtggattctcaattcgattgccccattttgttctttcttttaattcattataa |
42806492 |
T |
|
| Q |
115 |
taacttgattaattactttgatagattgatgcatatcaagcaatgggatggtataacctcccttgctctggctttattcaaattatcaatgatataggta |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42806493 |
taacttgattaattactttgatagattgatgcatatcaagcaatgggatggtataacctcccttgctctggctttattcaaattatc---gatataggtc |
42806589 |
T |
|
| Q |
215 |
tgggagcaagcatcttcccactttctaaccatgcttct |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
42806590 |
tgggagcaagcatcttcccactttctaaccatgcttct |
42806627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 42763638 - 42763871
Alignment:
| Q |
15 |
cagatttatatggtggcgataacatcaaactattcacttattggacaatggattcacaattcgattgccctgttttgttctttcttttaattcattataa |
114 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
42763638 |
cagatttatatggtgacgataacatcaaactattcacttattggacaatggattctcaattcgattgccccgctttgttctttcttttaattcattataa |
42763737 |
T |
|
| Q |
115 |
taacttgattaattactttgatagattgatgcatatcaagcaatgggatggtataacctcccttgctctggctttattcaaattatcaatgatataggta |
214 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42763738 |
---cttgtctaattactttgatagattgatgcatatcaagcaatgggttggtataacctcccttgctctggctttattcaaattatcaatgatataggta |
42763834 |
T |
|
| Q |
215 |
tgggagcaagcatcttcccactttctaaccatgcttc |
251 |
Q |
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| T |
42763835 |
tgggagcaagcatcttcccactttctaaccatgcttc |
42763871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 33049612 - 33049846
Alignment:
| Q |
15 |
cagatttatatggtggcgataacatcaaactattcacttattggacaatggattcacaattcgattgccctgttttgttctttcttttaattcattataa |
114 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33049612 |
cagatttatatggtggcgataacatcaaactattcacttattagacaatggattctcaattcgattgccccgttttgttctttcttttaattcattataa |
33049711 |
T |
|
| Q |
115 |
taacttgattaattactttgatagattgatgcatatcaagcaatgggatggtataacctcccttgctctggctttattcaaattatcaatgatataggta |
214 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33049712 |
taacttgtttaattactttgatagattgatgcatatcaagcaatgggatggtataacctcccttgctctggctttattcaaattatc---gatataggtc |
33049808 |
T |
|
| Q |
215 |
tgggagcaagcatcttcccactttctaaccatgcttct |
252 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
33049809 |
tgggagcaagcatcttcccactttctaaccatgcttct |
33049846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 252
Target Start/End: Complemental strand, 26429933 - 26429822
Alignment:
| Q |
141 |
tgatgcatatcaagcaatgggatggtataacctcccttgctctggctttattcaaattatcaatgatataggtatgggagcaagcatcttcccactttct |
240 |
Q |
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||||||||||||||||| || || ||||| |||| ||| ||||||||||||||||||| ||||| ||||| | |||||||| || | |||||||||| |
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| T |
26429933 |
tgatgcatatcaagcaactggttgttataatctcctttgttctggctttattcaaattaacaatggtatagcccttggagcaagtatatccccactttct |
26429834 |
T |
|
| Q |
241 |
aaccatgcttct |
252 |
Q |
| |
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||| ||| |||| |
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| T |
26429833 |
aactatggttct |
26429822 |
T |
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