View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20174_low_37 (Length: 256)

Name: NF20174_low_37
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20174_low_37
NF20174_low_37
[»] chr8 (1 HSPs)
chr8 (1-256)||(41966170-41966419)
[»] chr2 (32 HSPs)
chr2 (1-256)||(10336278-10336518)
chr2 (16-157)||(10372388-10372529)
chr2 (85-153)||(12005658-12005726)
chr2 (81-154)||(9275051-9275124)
chr2 (16-157)||(10348309-10348450)
chr2 (16-154)||(9357710-9357848)
chr2 (199-256)||(9292362-9292419)
chr2 (199-256)||(9357617-9357674)
chr2 (84-154)||(9283720-9283790)
chr2 (199-256)||(9321410-9321467)
chr2 (199-255)||(9060774-9060830)
chr2 (8-134)||(9316578-9316704)
chr2 (85-147)||(12018422-12018484)
chr2 (203-256)||(9283833-9283886)
chr2 (85-154)||(10353651-10353720)
chr2 (86-150)||(8573037-8573101)
chr2 (199-255)||(9329034-9329090)
chr2 (97-153)||(14550902-14550958)
chr2 (84-147)||(8579032-8579095)
chr2 (199-254)||(9316464-9316519)
chr2 (94-153)||(12012095-12012154)
chr2 (87-130)||(16269456-16269499)
chr2 (16-154)||(9292458-9292596)
chr2 (203-256)||(8573142-8573195)
chr2 (85-134)||(9329149-9329198)
chr2 (16-124)||(7115114-7115222)
chr2 (94-142)||(9365188-9365236)
chr2 (85-153)||(11987021-11987089)
chr2 (1-57)||(17565558-17565614)
chr2 (199-254)||(10348227-10348282)
chr2 (199-256)||(10353555-10353612)
chr2 (199-256)||(10372304-10372361)
[»] chr3 (2 HSPs)
chr3 (16-143)||(37463039-37463166)
chr3 (199-256)||(37462932-37462989)
[»] scaffold0667 (2 HSPs)
scaffold0667 (85-150)||(5011-5076)
scaffold0667 (199-252)||(4921-4974)
[»] chr1 (9 HSPs)
chr1 (84-148)||(29423801-29423865)
chr1 (198-256)||(29442965-29443023)
chr1 (94-153)||(29442867-29442926)
chr1 (198-256)||(29467428-29467485)
chr1 (94-153)||(29452859-29452918)
chr1 (94-145)||(29467333-29467384)
chr1 (198-256)||(29423702-29423760)
chr1 (202-256)||(29452955-29453009)
chr1 (104-153)||(29463510-29463559)
[»] chr4 (2 HSPs)
chr4 (199-256)||(26575307-26575364)
chr4 (85-146)||(26575411-26575472)


Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 41966170 - 41966419
Alignment:
Q  1 aacatcactcttctgggttcatgtaacggcctcctctacatctccaatggcgaaatcgatttctctaacccttacgacaaaaatgaaatcacattctgga 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41966170 aacatcactcttctgggttcatgtaacggcctcctctgcatctccaatggcgaaatcgatttctctaacccttacgacaaaaatgaaatcacattctgga 41966269  T
Q  101 accctaacatctgtaaacatcggattatcccttttctccctattcctattcctattcctccccgtcgttctgaacctgacgacatcaactttgcctattg 200  Q
    ||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41966270 accctaacatctgtaaacatcggattatcccttttctc------cctattcctattcctccccgtcgttctgaacctgacgacatcaactttgcctattg 41966363  T
Q  201 cgttcacggattcggttttgatccattaaccagcgattacaaactcctcagaatct 256  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41966364 cgttcacggattcggttttgatccattaaccagcgatcacaaactcctcagaatct 41966419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 10336518 - 10336278
Alignment:
Q  1 aacatcactcttctgggttcatgtaacggcctcctctacatctccaatggcgaaatcgatttctctaacccttacgacaaaaatgaaatcacattctgga 100  Q
    |||||| ||||||| |||||||| || |||||||||  |||||||||||||||||||| |||| |||||||||||  |   ||||||||| ||||||| |    
T  10336518 aacatcgctcttcttggttcatgcaatggcctcctcgccatctccaatggcgaaatcgctttcactaacccttactccgccaatgaaatcgcattctgta 10336419  T
Q  101 accctaacatctgtaaacatcggattatcccttttctccctattcctattcctattcctccccgtcgttctgaacctgacgacatcaactttgcctattg 200  Q
    | |||| |||| ||||||||||||||||||||| ||||||| |||||||||     ||||    ||||||| || ||||| |||||      || |  ||    
T  10336418 atcctaccatccgtaaacatcggattatcccttatctccctcttcctattc-----cctc----tcgttctcaatctgacaacatc------gctttatg 10336334  T
Q  201 cgttcacggattcggttttgatccattaaccagcgattacaaactcctcagaatct 256  Q
    |||||||||||||||||||||| ||||| ||  |||||||||||||||||||||||    
T  10336333 cgttcacggattcggttttgattcattatccgccgattacaaactcctcagaatct 10336278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 10372529 - 10372388
Alignment:
Q  16 ggttcatgtaacggcctcctctacatctccaatggcgaaatcgatttctctaacccttacgacaaaaatgaaatcacattctggaaccctaacatctgta 115  Q
    |||||||||||||||||||||  ||||| ||| ||| || ||| ||||  ||||||||  |||   |||||||||||||||||||||||||||| | |||    
T  10372529 ggttcatgtaacggcctcctcgccatctgcaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgta 10372430  T
Q  116 aacatcggattatcccttttctccctattcctattcctattc 157  Q
    ||||| || ||||||||||||||||| |||||||||||||||    
T  10372429 aacatagggttatcccttttctccctcttcctattcctattc 10372388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 12005658 - 12005726
Alignment:
Q  85 gaaatcacattctggaaccctaacatctgtaaacatcggattatcccttttctccctattcctattcct 153  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||    
T  12005658 gaaatcactttctggaaccctaacatccgtaaacatcggattatccctaatctccctattcctattcct 12005726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 9275124 - 9275051
Alignment:
Q  81 aaatgaaatcacattctggaaccctaacatctgtaaacatcggattatcccttttctccctattcctattccta 154  Q
    ||||||||| ||| ||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| ||||    
T  9275124 aaatgaaattacaatctggaaccctaacaccggtaaacatcggattatcccttttctccctcttcctataccta 9275051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 10348450 - 10348309
Alignment:
Q  16 ggttcatgtaacggcctcctctacatctccaatggcgaaatcgatttctctaacccttacgacaaaaatgaaatcacattctggaaccctaacatctgta 115  Q
    |||||||||||||||||||||  ||||||||  || | ||||| |||| |  | ||| || ||   || ||||||||| ||||||||||||||| | |||    
T  10348450 ggttcatgtaacggcctcctcgccatctccacaggggtaatcgttttcacgcatcctaacaacctcaacgaaatcacaatctggaaccctaacacccgta 10348351  T
Q  116 aacatcggattatcccttttctccctattcctattcctattc 157  Q
    ||||||  |||||||||||||||||| |||||||||||||||    
T  10348350 aacatcacattatcccttttctccctcttcctattcctattc 10348309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 9357848 - 9357710
Alignment:
Q  16 ggttcatgtaacggcctcctctacatctccaatggcgaaatcgatttctctaacccttacgacaaaaatgaaatcacattctggaaccctaacatctgta 115  Q
    |||||||||||||||||||||  |||||||||||||||||||| ||||    | ||| ||| |   || |||||| || ||||||||| ||||||| |||    
T  9357848 ggttcatgtaacggcctcctcgccatctccaatggcgaaatcgctttcaggcatcctaacgccgccaacgaaatctcaatctggaaccataacatccgta 9357749  T
Q  116 aacatcggattatcccttttctccctattcctattccta 154  Q
    ||||||  ||||||||||| |||||| ||||||| ||||    
T  9357748 aacatcacattatccctttcctccctcttcctatcccta 9357710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 9292419 - 9292362
Alignment:
Q  199 tgcgttcacggattcggttttgatccattaaccagcgattacaaactcctcagaatct 256  Q
    ||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||    
T  9292419 tgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatct 9292362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 9357674 - 9357617
Alignment:
Q  199 tgcgttcacggattcggttttgatccattaaccagcgattacaaactcctcagaatct 256  Q
    ||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||    
T  9357674 tgcgttcacggcttcggttttgatcctttaaccggcgattacaaactcctcagaatct 9357617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 9283720 - 9283790
Alignment:
Q  84 tgaaatcacattctggaaccctaacatctgtaaacatcggattatcccttttctccctattcctattccta 154  Q
    |||||||||| |||||||| |||||| | |||||||| |||||||||||||||||||| ||||||| ||||    
T  9283720 tgaaatcacaatctggaacactaacacccgtaaacattggattatcccttttctccctcttcctatcccta 9283790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 9321467 - 9321410
Alignment:
Q  199 tgcgttcacggattcggttttgatccattaaccagcgattacaaactcctcagaatct 256  Q
    |||||||| || |||||||||||||| |||||| ||||||||||||||||||||||||    
T  9321467 tgcgttcatggtttcggttttgatcctttaaccggcgattacaaactcctcagaatct 9321410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 9060774 - 9060830
Alignment:
Q  199 tgcgttcacggattcggttttgatccattaaccagcgattacaaactcctcagaatc 255  Q
    ||||||||||| ||||||||||||||||| |||  ||||||||||||||||||||||    
T  9060774 tgcgttcacggcttcggttttgatccattcaccgccgattacaaactcctcagaatc 9060830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 9316704 - 9316578
Alignment:
Q  8 ctcttctgggttcatgtaacggcctcctctacatctccaatggcgaaatcgatttctctaacccttacgacaaaaatgaaatcacattctggaaccctaa 107  Q
    ||||||| ||||||||||||||||| |||  ||| ||||||||  |||||| ||||    | ||||||| |   || ||||||||| |||||||||||||    
T  9316704 ctcttctcggttcatgtaacggccttctcgccatttccaatggtcaaatcgctttcatgcatccttacggcgccaacgaaatcacaatctggaaccctaa 9316605  T
Q  108 catctgtaaacatcggattatcccttt 134  Q
    || | |||||||||| |||||||||||    
T  9316604 cacccgtaaacatcgtattatcccttt 9316578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 12018422 - 12018484
Alignment:
Q  85 gaaatcacattctggaaccctaacatctgtaaacatcggattatcccttttctccctattcct 147  Q
    |||||| | |||||||||||| ||||| ||||||||||||||||||||  |||||||||||||    
T  12018422 gaaatcgctttctggaacccttacatccgtaaacatcggattatccctcatctccctattcct 12018484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 9283833 - 9283886
Alignment:
Q  203 ttcacggattcggttttgatccattaaccagcgattacaaactcctcagaatct 256  Q
    ||||||| |||||||||||||| |||||| ||||||||||||||||| ||||||    
T  9283833 ttcacggcttcggttttgatcctttaaccggcgattacaaactcctccgaatct 9283886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 10353720 - 10353651
Alignment:
Q  85 gaaatcacattctggaaccctaacatctgtaaacatcggattatcccttttctccctattcctattccta 154  Q
    ||||||||| | |||||||| |||| | |||| |||||||||||||||||||||||| ||||||| ||||    
T  10353720 gaaatcacaatatggaaccccaacacccgtaagcatcggattatcccttttctccctcttcctatcccta 10353651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 8573037 - 8573101
Alignment:
Q  86 aaatcacattctggaaccctaacatctgtaaacatcggattatcccttttctccctattcctatt 150  Q
    ||||| || ||||||||||||||| | |||||||||  |||||||||||||||||| ||||||||    
T  8573037 aaatcgcaatctggaaccctaacacccgtaaacatcacattatcccttttctccctcttcctatt 8573101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 9329090 - 9329034
Alignment:
Q  199 tgcgttcacggattcggttttgatccattaaccagcgattacaaactcctcagaatc 255  Q
    ||||||||||| |||||||||||||| ||| || | |||||||||||||||||||||    
T  9329090 tgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatc 9329034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 14550958 - 14550902
Alignment:
Q  97 tggaaccctaacatctgtaaacatcggattatcccttttctccctattcctattcct 153  Q
    ||||||||||||||| |||||||||| |||||||||  ||||||||||| |||||||    
T  14550958 tggaaccctaacatccgtaaacatcgcattatccctgatctccctattcttattcct 14550902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 8579032 - 8579095
Alignment:
Q  84 tgaaatcacattctggaaccctaacatctgtaaacatcggattatcccttttctccctattcct 147  Q
    ||||||| | |||||||||||||||||| ||||||||||  ||||||||| |||||| ||||||    
T  8579032 tgaaatcgctttctggaaccctaacatccgtaaacatcgagttatcccttatctccccattcct 8579095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 9316519 - 9316464
Alignment:
Q  199 tgcgttcacggattcggttttgatccattaaccagcgattacaaactcctcagaat 254  Q
    ||||||||||| |||||||||||||||| |||  | ||||||||||||||||||||    
T  9316519 tgcgttcacggcttcggttttgatccatcaacaggtgattacaaactcctcagaat 9316464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 12012095 - 12012154
Alignment:
Q  94 ttctggaaccctaacatctgtaaacatcggattatcccttttctccctattcctattcct 153  Q
    |||||||||||||||||| ||||||||| ||||||||||  ||||||| || ||||||||    
T  12012095 ttctggaaccctaacatccgtaaacatcagattatccctaatctccctgtttctattcct 12012154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 130
Target Start/End: Complemental strand, 16269499 - 16269456
Alignment:
Q  87 aatcacattctggaaccctaacatctgtaaacatcggattatcc 130  Q
    ||||||||||||||||||||||| |||||||||| |||||||||    
T  16269499 aatcacattctggaaccctaacacctgtaaacattggattatcc 16269456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 9292596 - 9292458
Alignment:
Q  16 ggttcatgtaacggcctcctctacatctccaatggcgaaatcgatttctctaacccttacgacaaaaatgaaatcacattctggaaccctaacatctgta 115  Q
    |||||||||||||||||||||  ||| |||||| || |||||   ||| |  | ||||||| |   || ||||||||| ||| |||||||||||    ||    
T  9292596 ggttcatgtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcata 9292497  T
Q  116 aacatcggattatcccttttctccctattcctattccta 154  Q
    |||||||||||||||||||||||||| || |||| ||||    
T  9292496 aacatcggattatcccttttctccctcttgctatcccta 9292458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 8573142 - 8573195
Alignment:
Q  203 ttcacggattcggttttgatccattaaccagcgattacaaactcctcagaatct 256  Q
    ||||||| ||||||||||||| |||||||  |||||||||||||||| ||||||    
T  8573142 ttcacggcttcggttttgatctattaaccgccgattacaaactcctccgaatct 8573195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 9329198 - 9329149
Alignment:
Q  85 gaaatcacattctggaaccctaacatctgtaaacatcggattatcccttt 134  Q
    ||||||||| ||||||||||||||| | |||||||||| |||||||||||    
T  9329198 gaaatcacaatctggaaccctaacacccgtaaacatcgtattatcccttt 9329149  T

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Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 7115114 - 7115222
Alignment:
Q  16 ggttcatgtaacggcctcctctacatctccaatggcgaaatcgatttctctaacccttacgacaaaaatgaaatcacattctggaaccctaacatctgta 115  Q
    |||||||||||||||||||||  ||||||||||||| |||||| |||  |  | ||| |  ||  || |||||||||| |||||||| |||||| | |||    
T  7115114 ggttcatgtaacggcctcctcgccatctccaatggccaaatcgcttttacgtatcctaatcacgcaactgaaatcacaatctggaacactaacacccgta 7115213  T
Q  116 aacatcgga 124  Q
    |||||||||    
T  7115214 aacatcgga 7115222  T

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Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 9365236 - 9365188
Alignment:
Q  94 ttctggaaccctaacatctgtaaacatcggattatcccttttctcccta 142  Q
    |||||||||||||||||| ||||||||||||| ||||||| ||| ||||    
T  9365236 ttctggaaccctaacatccgtaaacatcggatcatcccttatcttccta 9365188  T

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Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 11987021 - 11987089
Alignment:
Q  85 gaaatcacattctggaaccctaacatctgtaaacatcggattatcccttttctccctattcctattcct 153  Q
    |||||| | |||||||||||||||| | ||||||||||||||||||||  ||||| ||| ||| |||||    
T  11987021 gaaatcgctttctggaaccctaacacccgtaaacatcggattatccctcatctccttatcccttttcct 11987089  T

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Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 17565558 - 17565614
Alignment:
Q  1 aacatcactcttctgggttcatgtaacggcctcctctacatctccaatggcgaaatc 57  Q
    ||||| ||||||||||||||||||||||| |||||||  |||||||| ||| |||||    
T  17565558 aacattactcttctgggttcatgtaacggtctcctctgtatctccaacggcaaaatc 17565614  T

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Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 10348282 - 10348227
Alignment:
Q  199 tgcgttcacggattcggttttgatccattaaccagcgattacaaactcctcagaat 254  Q
    ||||||||||| ||||||||||||| | || || | ||||||||||||||||||||    
T  10348282 tgcgttcacggcttcggttttgatcaaatatccggtgattacaaactcctcagaat 10348227  T

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Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 10353612 - 10353555
Alignment:
Q  199 tgcgttcacggattcggttttgatccattaaccagcgattacaaactcctcagaatct 256  Q
    |||||||| || |||||||||||| |  || || ||||||||||||||||||||||||    
T  10353612 tgcgttcatggcttcggttttgattctgtatccggcgattacaaactcctcagaatct 10353555  T

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Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 10372361 - 10372304
Alignment:
Q  199 tgcgttcacggattcggttttgatccattaaccagcgattacaaactcctcagaatct 256  Q
    |||||||| || |||||||||||| | ||| || ||||| ||||||||||||||||||    
T  10372361 tgcgttcatggcttcggttttgattctttatccggcgatcacaaactcctcagaatct 10372304  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 37463166 - 37463039
Alignment:
Q  16 ggttcatgtaacggcctcctctacatctccaatggcgaaatcgatttctctaacccttacgacaaaaatgaaatcacattctggaaccctaacatctgta 115  Q
    |||||||||||||||||||||   |||||||||||| |||||| |||| |  | ||| ||| |   || ||||||||| |||||||||||||||   |||    
T  37463166 ggttcatgtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctggaaccctaacacacgta 37463067  T
Q  116 aacatcggattatcccttttctccctat 143  Q
    |||||| |||||||||||||||||||||    
T  37463066 aacatctgattatcccttttctccctat 37463039  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 37462989 - 37462932
Alignment:
Q  199 tgcgttcacggattcggttttgatccattaaccagcgattacaaactcctcagaatct 256  Q
    ||||||||||| |||||||||||| | |||||| ||||||||||||||||||||||||    
T  37462989 tgcgttcacggcttcggttttgattctttaaccggcgattacaaactcctcagaatct 37462932  T

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Target: scaffold0667 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 5076 - 5011
Alignment:
Q  85 gaaatcacattctggaaccctaacatctgtaaacatcggattatcccttttctccctattcctatt 150  Q
    ||||||||| ||||||||||||||||| |||||||||  |||||||||||||||||| | ||||||    
T  5076 gaaatcacaatctggaaccctaacatccgtaaacatcacattatcccttttctccctctacctatt 5011  T

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Target: scaffold0667; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 4974 - 4921
Alignment:
Q  199 tgcgttcacggattcggttttgatccattaaccagcgattacaaactcctcaga 252  Q
    ||||||||||| |||||||||||||| |||||| ||||||||||| ||||||||    
T  4974 tgcgttcacggcttcggttttgatcctttaaccggcgattacaaaatcctcaga 4921  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 29423865 - 29423801
Alignment:
Q  84 tgaaatcacattctggaaccctaacatctgtaaacatcggattatcccttttctccctattccta 148  Q
    ||||||| | ||||||||||||| ||||||||||||||| ||||||||||  |||||||||||||    
T  29423865 tgaaatcgctttctggaaccctaccatctgtaaacatcgcattatcccttccctccctattccta 29423801  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 29442965 - 29443023
Alignment:
Q  198 ttgcgttcacggattcggttttgatccattaaccagcgattacaaactcctcagaatct 256  Q
    |||| ||||||| ||||||||||||||||| |||| ||||||||||||| |||||||||    
T  29442965 ttgcattcacggcttcggttttgatccattgaccaacgattacaaactcatcagaatct 29443023  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 29442867 - 29442926
Alignment:
Q  94 ttctggaaccctaacatctgtaaacatcggattatcccttttctccctattcctattcct 153  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||  |||||||||| ||||    
T  29442867 ttctggaaccctaacatccgtaaacaccggattatcccctttcctcctattcctactcct 29442926  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 29467428 - 29467485
Alignment:
Q  198 ttgcgttcacggattcggttttgatccattaaccagcgattacaaactcctcagaatct 256  Q
    |||||||||||| |||||||||||||||||||||   ||||||||||| ||||||||||    
T  29467428 ttgcgttcacggcttcggttttgatccattaaccgatgattacaaact-ctcagaatct 29467485  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 29452859 - 29452918
Alignment:
Q  94 ttctggaaccctaacatctgtaaacatcggattatcccttttctccctattcctattcct 153  Q
    |||||||||||||||||| ||||||||| || ||| |||  |||||||||| ||||||||    
T  29452859 ttctggaaccctaacatccgtaaacatcagaatattcctaatctccctatttctattcct 29452918  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 29467333 - 29467384
Alignment:
Q  94 ttctggaaccctaacatctgtaaacatcggattatcccttttctccctattc 145  Q
    |||||||| ||||||||| |||||||||||||||| |||  |||||||||||    
T  29467333 ttctggaatcctaacatccgtaaacatcggattattcctaatctccctattc 29467384  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 29423760 - 29423702
Alignment:
Q  198 ttgcgttcacggattcggttttgatccattaaccagcgattacaaactcctcagaatct 256  Q
    ||||||| |||| ||||||||||||||||||||    |||||||||||||||| |||||    
T  29423760 ttgcgtttacggcttcggttttgatccattaactgatgattacaaactcctcacaatct 29423702  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 29452955 - 29453009
Alignment:
Q  202 gttcacggattcggttttgatccattaaccagcgattacaaactcctcagaatct 256  Q
    |||||||| || ||||||||||| |||| |  |||||||||||||||||||||||    
T  29452955 gttcacggctttggttttgatccgttaaacgtcgattacaaactcctcagaatct 29453009  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 29463510 - 29463559
Alignment:
Q  104 ctaacatctgtaaacatcggattatcccttttctccctattcctattcct 153  Q
    |||||||| |||||||| |||||||||||| || ||||||||||| ||||    
T  29463510 ctaacatccgtaaacattggattatcccttatccccctattcctactcct 29463559  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 26575364 - 26575307
Alignment:
Q  199 tgcgttcacggattcggttttgatccattaaccagcgattacaaactcctcagaatct 256  Q
    ||||||||||| |||||||||||| | ||| || ||||||||||||||||||||||||    
T  26575364 tgcgttcacggcttcggttttgattctttatccggcgattacaaactcctcagaatct 26575307  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 26575472 - 26575411
Alignment:
Q  85 gaaatcacattctggaaccctaacatctgtaaacatcggattatcccttttctccctattcc 146  Q
    |||||| || ||||||||||| ||| | ||||| ||||||||||||||||||||||| ||||    
T  26575472 gaaatcgcaatctggaacccttacaccggtaaatatcggattatcccttttctccctcttcc 26575411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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