View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20174_low_4 (Length: 588)

Name: NF20174_low_4
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20174_low_4
NF20174_low_4
[»] chr1 (6 HSPs)
chr1 (19-375)||(41601684-41602040)
chr1 (414-578)||(41602120-41602284)
chr1 (415-524)||(16263773-16263883)
chr1 (415-532)||(41602783-41602901)
chr1 (457-534)||(6815911-6815989)
chr1 (461-531)||(1670846-1670917)
[»] scaffold0633 (1 HSPs)
scaffold0633 (19-375)||(56-413)
[»] chr4 (7 HSPs)
chr4 (414-578)||(9470928-9471092)
chr4 (415-524)||(56395552-56395662)
chr4 (415-524)||(6230145-6230255)
chr4 (457-534)||(53648267-53648345)
chr4 (429-521)||(53721797-53721890)
chr4 (415-532)||(9470308-9470429)
chr4 (422-516)||(53722944-53723039)
[»] chr3 (1 HSPs)
chr3 (415-518)||(50035378-50035481)
[»] chr7 (6 HSPs)
chr7 (415-524)||(2946534-2946644)
chr7 (415-524)||(6483603-6483713)
chr7 (415-524)||(33141939-33142049)
chr7 (415-524)||(37998011-37998121)
chr7 (415-505)||(18520633-18520724)
chr7 (454-492)||(32952704-32952742)
[»] chr5 (1 HSPs)
chr5 (415-524)||(41196079-41196189)
[»] chr2 (5 HSPs)
chr2 (415-524)||(23988323-23988433)
chr2 (416-524)||(29100044-29100153)
chr2 (416-515)||(9206775-9206875)
chr2 (425-495)||(7355144-7355214)
chr2 (129-185)||(6848486-6848542)
[»] chr6 (1 HSPs)
chr6 (415-524)||(14799523-14799633)
[»] chr8 (1 HSPs)
chr8 (416-529)||(42189144-42189259)


Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 375
Target Start/End: Original strand, 41601684 - 41602040
Alignment:
Q  19 aatggtttgtgtttgtttttggtttatggatgttgttcgaataaattatggtggtttgtcgtatagttttgtcttgttaatgtaagtgcagagagttgtt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  41601684 aatggtttgtgtttgtttttggtttatggatgttgttcgaataaattatggtggtttgtcgtatggttttgtcttgtttatgtaagtgcagagagttgtt 41601783  T
Q  119 gtgcatcagacttactctcttttcttttacggtaagccttataggaaatattactgaatgttgcaatacatagcactgcaatttctagcttgtccatcac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||    
T  41601784 gtgcatcagacttactctcttttcttttacggtaagccttataggaaatattactgaatgttgcaatacataacactgcaatatctagcttgtctatcac 41601883  T
Q  219 tttaatcgatgaagtgtacaagaaagtgaataaacatattctttatgggagaaaataaaattagtttatctaaaaaacatatgctcgaactccatagaaa 318  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41601884 tttaaccgatgaagtgtacaagaaagtgaacaaacatattctttatgggagaaaataaaattagtttgtctaaaaaacatatgctcgaactccatagaaa 41601983  T
Q  319 gtgaacaaaacaagtttgtcaaaaaagcttctcaaataactagtagttagccctaat 375  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41601984 gtgaacaaaacaagtttgtcaaaaaagcttctcagataactagtagttagccctaat 41602040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 414 - 578
Target Start/End: Original strand, 41602120 - 41602284
Alignment:
Q  414 acaaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactatacacctctaacacccaattactctcttttattttaaatt 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||    
T  41602120 acaaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttattatacacctctaacactcaattactctcttttattctaaatt 41602219  T
Q  514 actttctctttcctctctcacccaggtaagatcttgttgttaatgcaattcattctttccctttg 578  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41602220 actttctctttcctctctcacccaggtaagatcttgttgttaatgcaattcattctttccctttg 41602284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 415 - 524
Target Start/End: Original strand, 16263773 - 16263883
Alignment:
Q  415 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactatacacctctaacacccaattactctcttttattttaaatta 514  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||  ||||| ||||||| ||||||||| |||||||    
T  16263773 caaaataaatatgaaccattggataaaaggaaattaactttggatcaaaatgcttactatatacctcccacaccgaattactttcttttattctaaatta 16263872  T
Q  515 ct-ttctcttt 524  Q
    || ||||||||    
T  16263873 ctcttctcttt 16263883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 415 - 532
Target Start/End: Complemental strand, 41602901 - 41602783
Alignment:
Q  415 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactatacacctctaacacccaattactctcttttattttaaatta 514  Q
    ||||||||||||||||||||||||||   ||||| || |||||||  |||||||||||||| ||||| |||||| ||||||| ||||||||| |||||||    
T  41602901 caaaataaatatgaaccattggataaggataaatcaattttggattcaaatgcttactatatacctccaacacctaattactttcttttattctaaatta 41602802  T
Q  515 ct-ttctctttcctctctc 532  Q
    || |||||||| |||||||    
T  41602801 ctcttctctttactctctc 41602783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 457 - 534
Target Start/End: Complemental strand, 6815989 - 6815911
Alignment:
Q  457 gatcaaaatgcttactatacacctctaacacccaattactctcttttattttaaattact-ttctctttcctctctcac 534  Q
    |||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  6815989 gatcaaaatgtttgctatacacctccaacacccaattactttcttttattttaaattactcttctctttcctctctcac 6815911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 461 - 531
Target Start/End: Complemental strand, 1670917 - 1670846
Alignment:
Q  461 aaaatgcttactatacacctctaacacccaattactctcttttattttaaattact-ttctctttcctctct 531  Q
    |||||| |||||||||||||| |||| ||||||||| ||||||||| ||||||||| |||||||||||||||    
T  1670917 aaaatgtttactatacacctccaacatccaattactttcttttattctaaattactcttctctttcctctct 1670846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 375
Target Start/End: Complemental strand, 413 - 56
Alignment:
Q  19 aatggtttgtgtttgtttttggtttatggatgttgttcgaataaattatggtggtttgtcgtatagttttgtcttgttaatgtaagtgcagagagttgtt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  413 aatggtttgtgtttgtttttggtttatggatgttgttcgaataaattatggtggtttgtcgtatggttttgtcttgtttatgtaagtgcagagagttgtt 314  T
Q  119 gtgcatcagacttactctcttttcttttacggtaagccttataggaaatattactgaatgttgcaatacatagcactgcaatttctagcttgtccatcac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||    
T  313 gtgcatcagacttactctcttttcttttacggtaagccttataggaaatattactgaatgttgcaatacataacactgcaatatctagcttgtctatcac 214  T
Q  219 tttaatcgatgaagtgtacaagaaagtgaataaacatattctttatgggagaaaataaaattagtttatctaaaaaacatatgctcgaactccatagaaa 318  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  213 tttaaccgatgaagtgtacaagaaagtgaacaaacatattctttatgggagaaaataaaattagtttgtctaaaaaacatatgctcgaactccatagaaa 114  T
Q  319 gtgaacaaaacaagtttgtcaaaaaag-cttctcaaataactagtagttagccctaat 375  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  113 gtgaacaaaacaagtttgtcaaaaaagacttctcagataactagtagttagccctaat 56  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 149; Significance: 2e-78; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 414 - 578
Target Start/End: Complemental strand, 9471092 - 9470928
Alignment:
Q  414 acaaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactatacacctctaacacccaattactctcttttattttaaatt 513  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  9471092 acaaaataaatatgaaccattagataaaagtaaattaactttggatcaaaatgcttactacacacctctaacacccaattactctcttttattctaaatt 9470993  T
Q  514 actttctctttcctctctcacccaggtaagatcttgttgttaatgcaattcattctttccctttg 578  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9470992 actttctctttcctctctcacccaggtaagatcttgttgttgatgcaattcattctttccctttg 9470928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 415 - 524
Target Start/End: Original strand, 56395552 - 56395662
Alignment:
Q  415 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactatacacctctaacacccaattactctcttttattttaaatta 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||| ||||||||| |||||||    
T  56395552 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactatatacctcccacaccgaattactttcttttattctaaatta 56395651  T
Q  515 ct-ttctcttt 524  Q
    || ||||||||    
T  56395652 ctattctcttt 56395662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 415 - 524
Target Start/End: Original strand, 6230145 - 6230255
Alignment:
Q  415 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactatacacctctaacacccaattactctcttttattttaaatta 514  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||  ||||| ||||||| ||||||||| |||||||    
T  6230145 caaaataaatatgaaccattggataaaagtaaattaaatttggatcaaaatgcttactatatacctcccacaccgaattactttcttttattctaaatta 6230244  T
Q  515 ct-ttctcttt 524  Q
    || ||||||||    
T  6230245 ctcttctcttt 6230255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 457 - 534
Target Start/End: Original strand, 53648267 - 53648345
Alignment:
Q  457 gatcaaaatgcttactatacacctctaacacccaattactctcttttattttaaattact-ttctctttcctctctcac 534  Q
    |||||||||| |||||||||||||| |||||||||||||| ||||||||| ||||||||| ||||||||||||||||||    
T  53648267 gatcaaaatgtttactatacacctccaacacccaattactttcttttattctaaattactcttctctttcctctctcac 53648345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 429 - 521
Target Start/End: Original strand, 53721797 - 53721890
Alignment:
Q  429 accattggataaaagtaaattaacttt-ggatcaaaatgcttactatacacctctaacacccaattactctcttttattttaaattactttctc 521  Q
    ||||||||||||  || |||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||| ||||    
T  53721797 accattggataagggttaattaacttttggatcaaaatgcttactatacacctcaaacactcaattactttcttttattttaatttactctctc 53721890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 415 - 532
Target Start/End: Original strand, 9470308 - 9470429
Alignment:
Q  415 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactata---cacctctaacacccaattactctcttttattttaaa 511  Q
    ||||||||||||||||||||||||||   ||||| || |||||||  ||||||||||||||    |||||  ||||| ||||| | ||||||||| ||||    
T  9470308 caaaataaatatgaaccattggataaggataaatcaattttggattcaaatgcttactatatactacctcccacacctaattattttcttttattctaaa 9470407  T
Q  512 ttact-ttctctttcctctctc 532  Q
    ||||| |||||||| |||||||    
T  9470408 ttactcttctctttactctctc 9470429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 422 - 516
Target Start/End: Complemental strand, 53723039 - 53722944
Alignment:
Q  422 aatatgaaccattggataaaagtaaattaac-tttggatcaaaatgcttactatacacctctaacacccaattactctcttttattttaaattact 516  Q
    ||||||||||||| ||||| | | || |||| ||| |||||||||  |||||||||||||| |||| ||||||| | |||||||||||||||||||    
T  53723039 aatatgaaccatttgataagaattaactaacctttagatcaaaatatttactatacacctccaacatccaattattttcttttattttaaattact 53722944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 415 - 518
Target Start/End: Original strand, 50035378 - 50035481
Alignment:
Q  415 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactatacacctctaacacccaattactctcttttattttaaatta 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||| ||||||||| |||||||    
T  50035378 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactatatacctcccacaccgaattactttcttttattctaaatta 50035477  T
Q  515 cttt 518  Q
    ||||    
T  50035478 cttt 50035481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 415 - 524
Target Start/End: Original strand, 2946534 - 2946644
Alignment:
Q  415 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactatacacctctaacacccaattactctcttttattttaaatta 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||| ||||||||| |||||||    
T  2946534 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactatatacctcccacaccgaattactttcttttattctaaatta 2946633  T
Q  515 ct-ttctcttt 524  Q
    || ||||||||    
T  2946634 ctcttctcttt 2946644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 415 - 524
Target Start/End: Original strand, 6483603 - 6483713
Alignment:
Q  415 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactatacacctctaacacccaattactctcttttattttaaatta 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||| ||||||||| |||||||    
T  6483603 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactatatacctcccacaccgaattactttcttttattctaaatta 6483702  T
Q  515 ct-ttctcttt 524  Q
    || ||||||||    
T  6483703 ctcttctcttt 6483713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 415 - 524
Target Start/End: Original strand, 33141939 - 33142049
Alignment:
Q  415 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactatacacctctaacacccaattactctcttttattttaaatta 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||| ||||||||| |||||||    
T  33141939 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactatatacctcccacaccgaattactttcttttattctaaatta 33142038  T
Q  515 ct-ttctcttt 524  Q
    || ||||||||    
T  33142039 ctcttctcttt 33142049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 415 - 524
Target Start/End: Complemental strand, 37998121 - 37998011
Alignment:
Q  415 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactatacacctctaacacccaattactctcttttattttaaatta 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||| ||||||||| ||| |||    
T  37998121 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactatatacctcccacaccgaattactttcttttattctaattta 37998022  T
Q  515 ct-ttctcttt 524  Q
    || ||||||||    
T  37998021 ctcttctcttt 37998011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 415 - 505
Target Start/End: Complemental strand, 18520724 - 18520633
Alignment:
Q  415 caaaataaatatgaaccattggataaaagtaaattaacttt-ggatcaaaatgcttactatacacctctaacacccaattactctcttttat 505  Q
    |||||||||||||||| ||| ||||||||| |||||||||| |||||||||| |||||||||||| |  | |||||||||||| ||||||||    
T  18520724 caaaataaatatgaactatttgataaaagttaattaacttttggatcaaaatccttactatacactttcagcacccaattactttcttttat 18520633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 32952704 - 32952742
Alignment:
Q  454 ttggatcaaaatgcttactatacacctctaacacccaat 492  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  32952704 ttggatcaaaatgcttactatacacctccaacactcaat 32952742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 415 - 524
Target Start/End: Original strand, 41196079 - 41196189
Alignment:
Q  415 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactatacacctctaacacccaattactctcttttattttaaatta 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||| ||||||||| |||||||    
T  41196079 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactatatacctcccacaccgaattactttcttttattctaaatta 41196178  T
Q  515 ct-ttctcttt 524  Q
    || ||||||||    
T  41196179 ctcttctcttt 41196189  T

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Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 415 - 524
Target Start/End: Original strand, 23988323 - 23988433
Alignment:
Q  415 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactatacacctctaacacccaattactctcttttattttaaatta 514  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||| ||||||||| |||||||    
T  23988323 caaaataaatatgaactattggataaaagtaaattaactttggatcaaaatgcttactatatacctcccacaccgaattactttcttttattctaaatta 23988422  T
Q  515 ct-ttctcttt 524  Q
    || ||||||||    
T  23988423 ctcttctcttt 23988433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 416 - 524
Target Start/End: Original strand, 29100044 - 29100153
Alignment:
Q  416 aaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactatacacctctaacacccaattactctcttttattttaaattac 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||  ||||| ||||||| ||||||||| ||||||||    
T  29100044 aaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgtttactatatacctcccacaccgaattactttcttttattctaaattac 29100143  T
Q  516 t-ttctcttt 524  Q
    | ||||||||    
T  29100144 tcttctcttt 29100153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 416 - 515
Target Start/End: Complemental strand, 9206875 - 9206775
Alignment:
Q  416 aaaataaatatgaaccattggataaaagtaaattaacttt-ggatcaaaatgcttactatacacctctaacacccaattactctcttttattttaaatta 514  Q
    |||||||||||||||||||||||||   | || ||| ||| |||||||||| ||||||||||||||| ||||||||||| || ||||||||| |||||||    
T  9206875 aaaataaatatgaaccattggataaggattaactaatttttggatcaaaatacttactatacacctccaacacccaattgctatcttttattctaaatta 9206776  T
Q  515 c 515  Q
    |    
T  9206775 c 9206775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 425 - 495
Target Start/End: Original strand, 7355144 - 7355214
Alignment:
Q  425 atgaaccattggataaaagtaaattaactttggatcaaaatgcttactatacacctctaacacccaattac 495  Q
    |||||||||| |||||| || ||||||||||||||||||||| ||| ||||||| ||  ||||||||||||    
T  7355144 atgaaccattagataaaggttaattaactttggatcaaaatgtttattatacacttcccacacccaattac 7355214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 6848542 - 6848486
Alignment:
Q  129 cttactctcttttcttttacggtaagccttataggaaatattactgaatgttgcaat 185  Q
    ||||||||||||||||| || |||| |||||||| |||||||||  |||||||||||    
T  6848542 cttactctcttttctttgacagtaaaccttatagaaaatattaccaaatgttgcaat 6848486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 415 - 524
Target Start/End: Original strand, 14799523 - 14799633
Alignment:
Q  415 caaaataaatatgaaccattggataaaagtaaattaactttggatcaaaatgcttactatacacctctaacacccaattactctcttttattttaaatta 514  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||  ||||| ||||||| ||||||||| |||||||    
T  14799523 caaaataaatatgaaccattgaataaaagtaaattaactttggatcaaaattcttactatatacctcccacaccgaattactttcttttattctaaatta 14799622  T
Q  515 ct-ttctcttt 524  Q
    || ||||||||    
T  14799623 ctcttctcttt 14799633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 416 - 529
Target Start/End: Original strand, 42189144 - 42189259
Alignment:
Q  416 aaaataaatatgaaccattggataaaagtaaattaactttgga-tcaaaatgcttactatacacctctaacacccaattactctcttttattttaaatta 514  Q
    ||||| |||| ||||||||||||||| || |||||||||| || ||||||||||||||||||||||| |||||||||||| | | ||||||| |||||||    
T  42189144 aaaatgaatacgaaccattggataaaggttaattaacttttgaatcaaaatgcttactatacacctccaacacccaattattttgttttattctaaatta 42189243  T
Q  515 ct-ttctctttcctct 529  Q
    || |||||||| ||||    
T  42189244 ctcttctcttttctct 42189259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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