View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20174_low_40 (Length: 244)
Name: NF20174_low_40
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 11584317 - 11584548
Alignment:
| Q |
1 |
ttagagattaatgatttggagaccgcgttttatccatgggataatgtttgattctcgtagttactctccctatgtatgtctgtttttatgtacatattta |
100 |
Q |
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| T |
11584317 |
ttagagattaatgatttggagaccgcgttttatccatgagataatgtttgattctcgttgttactctccctatgtatgtctgtttttatgtacatattta |
11584416 |
T |
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| Q |
101 |
ggaaatat--atataaatcatgtatgctcagaaagcatattgtataagttacacatataatgtggggacgatcacattgattttacacaatagcatagca |
198 |
Q |
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| T |
11584417 |
ggaaatatatatataaatcatgtatgcttagaaagcatattgtataagttacacatataatgtggagacgatcacattgattttacacaataacatagcg |
11584516 |
T |
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| Q |
199 |
aatgttagagtaagcgttgggaagagagtgtt |
230 |
Q |
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| T |
11584517 |
aatgttagagtaagcgttgggaagagagtgtt |
11584548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 11598610 - 11598666
Alignment:
| Q |
172 |
acattgattttacacaatagcatagcaaatgttagagtaagcgttgggaagagagtg |
228 |
Q |
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| T |
11598610 |
acattggttttacacaataacatagtgaatgttagagtaagcgttgtgaagagagtg |
11598666 |
T |
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