View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20174_low_41 (Length: 240)

Name: NF20174_low_41
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20174_low_41
NF20174_low_41
[»] scaffold0386 (2 HSPs)
scaffold0386 (1-95)||(15290-15384)
scaffold0386 (146-221)||(15435-15510)
[»] chr7 (2 HSPs)
chr7 (5-90)||(18710525-18710610)
chr7 (16-78)||(25859043-25859105)
[»] chr8 (1 HSPs)
chr8 (16-89)||(8341300-8341373)
[»] chr4 (2 HSPs)
chr4 (16-78)||(53685507-53685569)
chr4 (28-77)||(9607117-9607166)
[»] chr1 (3 HSPs)
chr1 (15-77)||(24988250-24988312)
chr1 (9-95)||(48155988-48156074)
chr1 (42-95)||(52090524-52090576)
[»] scaffold0060 (1 HSPs)
scaffold0060 (28-89)||(34576-34637)
[»] chr6 (2 HSPs)
chr6 (28-89)||(2356764-2356825)
chr6 (16-76)||(30123672-30123732)
[»] chr3 (1 HSPs)
chr3 (16-89)||(53489206-53489279)
[»] chr5 (2 HSPs)
chr5 (16-67)||(35192750-35192801)
chr5 (42-89)||(34220647-34220695)


Alignment Details
Target: scaffold0386 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 15290 - 15384
Alignment:
Q  1 taataacctaaaatgttgataaaggtattcgttcgaagtaatatttttatattattgattagaatataaatctttttggattagttacatgacta 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15290 taataacctaaaatgttgataaaggtattcgttcgaagtaatatttttatattattgattagaatataaatctttttggattagttacatgacta 15384  T

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Target: scaffold0386; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 15435 - 15510
Alignment:
Q  146 gaaaaagtctatttgatttaaataggggttaatttttactattagagtcggatctccaattttctagaaacgacct 221  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  15435 gaaaaagtctatttgatttaaataggggctaatttttactattagagtcggatctccaatttcctagaaacgacct 15510  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 18710610 - 18710525
Alignment:
Q  5 aacctaaaatgttgataaaggtattcgttcgaagtaatatttttatattattgattagaatataaatctttttggattagttacat 90  Q
    |||||||||| ||||||||| |||| ||| ||||| ||||||||||||||||||| ||||||| ||| ||||| |  |||||||||    
T  18710610 aacctaaaatattgataaagatatttgtttgaagttatatttttatattattgatcagaatatgaattttttttgcatagttacat 18710525  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 25859043 - 25859105
Alignment:
Q  16 ttgataaaggtattcgttcgaagtaatatttttatattattgattagaatataaatctttttg 78  Q
    ||||||| | |||||||| |||||  |||||||||||||||||||||||||| ||| ||||||    
T  25859043 ttgataatgatattcgtttgaagttgtatttttatattattgattagaatatcaatttttttg 25859105  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 8341373 - 8341300
Alignment:
Q  16 ttgataaaggtattcgttcgaagtaatatttttatattattgattagaatataaatctttttggattagttaca 89  Q
    ||||||| | |||||||| |||||  |||||||||||||||||||||||||| ||| ||||||  |||||||||    
T  8341373 ttgataatgatattcgtttgaagttgtatttttatattattgattagaatatcaatttttttgtgttagttaca 8341300  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 53685569 - 53685507
Alignment:
Q  16 ttgataaaggtattcgttcgaagtaatatttttatattattgattagaatataaatctttttg 78  Q
    ||||||| | |||||||| |||||  |||||||||||||||||||||||||| ||| ||||||    
T  53685569 ttgataatgatattcgtttgaagttgtatttttatattattgattagaatatcaatttttttg 53685507  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 9607117 - 9607166
Alignment:
Q  28 ttcgttcgaagtaatatttttatattattgattagaatataaatcttttt 77  Q
    |||||| |||||  |||||||||||||||||||||||||| ||| |||||    
T  9607117 ttcgtttgaagttgtatttttatattattgattagaatatcaattttttt 9607166  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 24988250 - 24988312
Alignment:
Q  15 gttgataaaggtattcgttcgaagtaatatttttatattattgattagaatataaatcttttt 77  Q
    ||||||||||||||||||  |||  | ||||||||||||||| ||||||||||| ||||||||    
T  24988250 gttgataaaggtattcgtctgaacaagtatttttatattatttattagaatatagatcttttt 24988312  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 48155988 - 48156074
Alignment:
Q  9 taaaatgttgataaaggtattcgttcgaagtaatatttttatattattgattagaatataaatctttttggattagttacatgacta 95  Q
    ||||||||  |||||  |||||||| |||||  |||||||||||||||||||||||||| ||| ||||||  ||  |||||||||||    
T  48155988 taaaatgtcaataaaaatattcgtttgaagttgtatttttatattattgattagaatatgaatttttttgtgttttttacatgacta 48156074  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 52090524 - 52090576
Alignment:
Q  42 tatttttatattattgattagaatataaatctttttggattagttacatgacta 95  Q
    |||||||||||||||||||||||||| ||| ||||||  |||||||||||||||    
T  52090524 tatttttatattattgattagaatat-aatttttttgtgttagttacatgacta 52090576  T

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Target: scaffold0060 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 34576 - 34637
Alignment:
Q  28 ttcgttcgaagtaatatttttatattattgattagaatataaatctttttggattagttaca 89  Q
    |||||| |||||  |||||||||||||||||||||||||| ||| ||||||  |||||||||    
T  34576 ttcgtttgaagttgtatttttatattattgattagaatatcaatttttttgtgttagttaca 34637  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 2356825 - 2356764
Alignment:
Q  28 ttcgttcgaagtaatatttttatattattgattagaatataaatctttttggattagttaca 89  Q
    |||||| |||||  |||||||||||||||||||||||||| ||| ||||||  |||||||||    
T  2356825 ttcgtttgaagttgtatttttatattattgattagaatatcaatttttttgtgttagttaca 2356764  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 30123732 - 30123672
Alignment:
Q  16 ttgataaaggtattcgttcgaagtaatatttttatattattgattagaatataaatctttt 76  Q
    ||||||||| |||||| | |||||  ||||||||||||||||||||||||||  |||||||    
T  30123732 ttgataaagatattcgcttgaagttgtatttttatattattgattagaatattgatctttt 30123672  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 53489279 - 53489206
Alignment:
Q  16 ttgataaaggtattcgttcgaagtaatatttttatattattgattagaatataaatctttttggattagttaca 89  Q
    ||||||| | |||||||| |||||  |||||||||||||||||||||||||| ||  ||||||  |||||||||    
T  53489279 ttgataatgatattcgtttgaagttgtatttttatattattgattagaatatcaacttttttgtgttagttaca 53489206  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 35192750 - 35192801
Alignment:
Q  16 ttgataaaggtattcgttcgaagtaatatttttatattattgattagaatat 67  Q
    ||||||||| |||||| | |||||  ||||||||||||||||||||||||||    
T  35192750 ttgataaagatattcgcttgaagttgtatttttatattattgattagaatat 35192801  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 34220695 - 34220647
Alignment:
Q  42 tatttttatattattgattagaatataaatctttt-tggattagttaca 89  Q
    ||||||||||||||||||||||||||  ||||||| || ||||||||||    
T  34220695 tatttttatattattgattagaatattgatcttttatgtattagttaca 34220647  T

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