View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20174_low_42 (Length: 240)
Name: NF20174_low_42
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 840105 - 840315
Alignment:
| Q |
12 |
attctattttgcttttatcagttgagaaacaatgttaaaaggtaggtatgtttaatacttttctcaatatttattgnnnnnnnctctatttctctcttac |
111 |
Q |
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| T |
840105 |
attctattttgcttttatcagttgagaaacaatgttaaaaggtaggtatgtttaatacttttctcaatatttattgtttttt-ctctatttctctcttac |
840203 |
T |
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| Q |
112 |
ccattttctattgtttccctccagtgattcataaaatgaagtggctgcaaatgctcttttctcgattgaagaagtttttgtcgaagaagcattcaactaa |
211 |
Q |
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| T |
840204 |
ccatttcttattgtttccctccagtgattcataaaatgaagtggctgcaaatgctcttttctcgattgaagaagtttttgtcgaagaagcattcaactaa |
840303 |
T |
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| Q |
212 |
aaataagagtat |
223 |
Q |
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|||||||||||| |
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| T |
840304 |
aaataagagtat |
840315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 820076 - 820140
Alignment:
| Q |
144 |
aaaatgaagtggctgcaaatgctcttttctcgattgaagaagtttttgtcgaagaagcattcaac |
208 |
Q |
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| T |
820076 |
aaaatgaagtggctgaaatcactcatttctcgattgaagaaggtttggaagaagaagcattcaac |
820140 |
T |
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