View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20174_low_43 (Length: 239)
Name: NF20174_low_43
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 43385812 - 43385592
Alignment:
| Q |
1 |
tattggctatcttcctgttatctaatcatagttattttctgctaaacatcgtattcgaccattgctaaattcagtactgagtttttaatggcttccaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43385812 |
tattggctatcttcctgttatctaatcatagttattttctgctaaacatcgtattcgaccattgctaaattcggtactgagtttttaatggcttccaagt |
43385713 |
T |
|
| Q |
101 |
tccaagtataggtgcatgcgttcatatttttacattttcatctcaaaagtgagatgtataattaaatctcccctcctcattcctcaaaatctaatttgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43385712 |
tccaagtataggtgcatgcgttcatatttttacattttcatctcaaaagtgagatgtataattaaatctcccctcctcattcctcaaaatctaatttgaa |
43385613 |
T |
|
| Q |
201 |
atcaattaagaaattatgagt |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
43385612 |
atcaattaagaaattatgagt |
43385592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 8775236 - 8775031
Alignment:
| Q |
1 |
tattggctatcttcctgttatctaatcatagttattttctgctaaacatcgtattcgaccattgctaaattcagtactgagtttttaatggcttccaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||| | ||||||||| ||| ||||||||||||||| ||||||||| | |
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| T |
8775236 |
tattggctatcttcctgttatctaatcagagttattttctgctaaacattgtatctgtccattgcta--ttcggtactgagtttttaaaggcttccaaat |
8775139 |
T |
|
| Q |
101 |
tccaagtatagg-tgcatgcgttcatatttttacattttcatctcaaaagtgagatgtataattaaatctcccctcctcattcctcaaaatctaatttga |
199 |
Q |
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||||| |||||| |||||| ||| ||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||| ||||| | |
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| T |
8775138 |
-------atagggtgcatgtgttcatgtttgtacattttcatctcaaatgtgagatgtataataaaacctcccctcctcattcctcaaaatccaatttta |
8775046 |
T |
|
| Q |
200 |
aatcaattaagaaat |
214 |
Q |
| |
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||||||||||||||| |
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| T |
8775045 |
aatcaattaagaaat |
8775031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 1692136 - 1692341
Alignment:
| Q |
1 |
tattggctatcttcctgttatctaatcatagttattttctgctaaacatcgtattcgaccattgctaaattcagtactgagtttttaatggcttccaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||| | ||||||||| || ||||||||||||||| ||||||||| | |
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| T |
1692136 |
tattggctatcttcctgttatctaatcacagttattttctgctaaacattgtatctgtccattgcta--tttggtactgagtttttaaaggcttccaaat |
1692233 |
T |
|
| Q |
101 |
tccaagtatagg-tgcatgcgttcatatttttacattttcatctcaaaagtgagatgtataattaaatctcccctcctcattcctcaaaatctaatttga |
199 |
Q |
| |
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||||| |||| | |||||| ||| ||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||| ||||| | |
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| T |
1692234 |
-------atagggtgcaagtgttcatgtttgtacattttcatctcaaatgtgagatgtataataaaacctcccctcctcattcctcaaaatccaatttta |
1692326 |
T |
|
| Q |
200 |
aatcaattaagaaat |
214 |
Q |
| |
|
||||||||||||||| |
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|
| T |
1692327 |
aatcaattaagaaat |
1692341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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