View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20174_low_47 (Length: 236)
Name: NF20174_low_47
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_low_47 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 76 - 236
Target Start/End: Original strand, 32389101 - 32389261
Alignment:
| Q |
76 |
cgtatttactttatttagctctctacatttatcgatctatattttttccctaaaaagacaaaacacagcttaaaaaattatggatttgtccaaaaaattc |
175 |
Q |
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| T |
32389101 |
cgtatttactttatttagctctctacatttatcaatctatattttttccctaaaaagacaaaacacagcttaaaaaattatggatttgtccaaaaaattc |
32389200 |
T |
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| Q |
176 |
caagagcatcatgaaaattaagtcattttaaattgaaatgaaattactgttataactgtat |
236 |
Q |
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| T |
32389201 |
caagagcatcatgaaaattaagtcattttaaattgaaatgaaattactgttataactgtat |
32389261 |
T |
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