View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20174_low_50 (Length: 206)
Name: NF20174_low_50
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 1424619 - 1424445
Alignment:
| Q |
16 |
cagagacgtatatgttggtttatccaattccttcggaaaagatcttacattttttatttc------aacttgtctgaaggattgtatcaatcctcttttt |
109 |
Q |
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| T |
1424619 |
cagagacgtacatgttggtttatccaattccttcagaaaagatcttacattttttatttctatttcaacttgtctgaaggattgtatcaatcctcttttt |
1424520 |
T |
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| Q |
110 |
gacatattgactgatgtcttaccaaagagaacaaataaccaaggagcagcggtaaaaatctttcaatgtgctcag |
184 |
Q |
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| T |
1424519 |
gacatattgactgatgtcttaccaaagagaacaaataaccaaagtgcagcggtaaaaatctttcaatgtgctcag |
1424445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 10712546 - 10712438
Alignment:
| Q |
19 |
agacgtatatgttggtttatccaattccttcggaaaagatcttacattttttatttcaacttgtctgaaggattgtatcaatcctctttttgacatattg |
118 |
Q |
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| T |
10712546 |
agacgtacattttggtttattcaattccttaagaaaagatctcaccttgtttatttcatcttgatcaaagggttgaaccaatccttcttttgacatattg |
10712447 |
T |
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| Q |
119 |
actgatgtc |
127 |
Q |
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| T |
10712446 |
attgatgtc |
10712438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 1673854 - 1673990
Alignment:
| Q |
19 |
agacgtatatgttggtttatccaattccttcggaaaagatcttacat----tttttatttcaacttgtctgaaggattgtatcaatcctctttttgacat |
114 |
Q |
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| T |
1673854 |
agacgtacatgttggtttatccaattccttaagaaaagatcttacataccttttttatttcatcttgactgaagggttgaatcaatcatccttgtgacat |
1673953 |
T |
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| Q |
115 |
attgactgatgtcttaccaaagagaacaaataaccaa |
151 |
Q |
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| T |
1673954 |
atcgattggtgtcttaccaaagagaacaaataaccaa |
1673990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 34 - 184
Target Start/End: Original strand, 29443152 - 29443302
Alignment:
| Q |
34 |
tttatccaattccttcggaaaagatcttacattttttatttcaacttgtctgaaggattgtatcaatcctctttttgacatattgactgatgtcttacca |
133 |
Q |
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| T |
29443152 |
tttatccaatttcttaagaaaatatctcacattttttatttcatcttgactaaacggatgggtcaatcctccttttgacatattgactgatgtcttacca |
29443251 |
T |
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| Q |
134 |
aagagaacaaataaccaaggagcagcggtaaaaatctttcaatgtgctcag |
184 |
Q |
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| T |
29443252 |
aagagaacaaataggcaaagaacaacagtaaaaagcttccaatgtgctcag |
29443302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 50057798 - 50057687
Alignment:
| Q |
16 |
cagagacgtatatgttggtttatccaattccttcggaaaagatcttacattttttatttcaacttgtctgaaggattgtatcaatcctctttttgacata |
115 |
Q |
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|||||||||| || |||||||||| |||||||| ||||||||||||| || ||||||||| ||| ||||||| ||| ||||||||| |||||||||| |
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| T |
50057798 |
cagagacgtacatcttggtttatctaattccttaagaaaagatcttaccttgtttatttcatcttcactgaagggttgaatcaatccttcttttgacata |
50057699 |
T |
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| Q |
116 |
ttgactgatgtc |
127 |
Q |
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|||| ||||||| |
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| T |
50057698 |
ttgattgatgtc |
50057687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 28095647 - 28095772
Alignment:
| Q |
27 |
atgttggtttatccaattccttcggaaaagatcttacattttttatttcaacttgtctgaaggattgtatcaatcctctttttgacatattgactgatgt |
126 |
Q |
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|||||||||||||||||| ||| |||||||||| || |||||||||||| |||| ||||| ||| || | | ||| ||||||||||||||||||||| |
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| T |
28095647 |
atgttggtttatccaattgcttgagaaaagatctcaccttttttatttcatcttgagtgaagagttgaatgatttctccttttgacatattgactgatgt |
28095746 |
T |
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| Q |
127 |
cttaccaaagagaacaaataaccaagga |
154 |
Q |
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| T |
28095747 |
cttac--aaaagaacaaatagccaagga |
28095772 |
T |
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