View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20174_low_6 (Length: 522)
Name: NF20174_low_6
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 279 - 510
Target Start/End: Complemental strand, 4880866 - 4880635
Alignment:
| Q |
279 |
aattaatttaactcttagtgtatattataaattattataaagattaattactgataactatgaatttttgttgattatttaatttcagcctggatcaact |
378 |
Q |
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| T |
4880866 |
aattaatttaactcttagtgtatattataaattattataaagattaattactgataactatgaatttttgttgattatttaatttcagcctggatcaact |
4880767 |
T |
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| Q |
379 |
tcacatgcttgctcacaaccatagaaagtacagtgacaagggcaacaaccgactggaaataactcagatgttcaattactattataattttcagtgattg |
478 |
Q |
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| T |
4880766 |
tcacatgcttgctcacaaccatagaaagtacagtgacaagggcaacaaccgactggaaataattcagatgttcaattactattataattttcagtgattg |
4880667 |
T |
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| Q |
479 |
aaatatgaaagcactactcattagcatagtat |
510 |
Q |
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| T |
4880666 |
aaatatgaaagcactactcattagcatagtat |
4880635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 4881099 - 4880871
Alignment:
| Q |
16 |
aggaggtgggtcatttcaagctgtggacactctcaatggagagctattgtgtggatgtgatgatgttcatacatgtgtggtaaggaaattaaatctatga |
115 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4881099 |
aggaggagggtcatttcaagctgtggacactctcaatggagagctattgtgtggatgtgatgatgttcatacatgtgtggtaaggaaattaaatctatga |
4881000 |
T |
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| Q |
116 |
aacactaaatcacatggatactaacacgctgacattgctgataatttnnnnnnnttacataatacagtgtagttctatttttgatgtcatatcgttgtag |
215 |
Q |
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| T |
4880999 |
aacactgaaacacacggatactaacacgccgacattgctaataatttaaaaaaattacataatacagtgtagttatatttttgatgtcgtatcgttgtag |
4880900 |
T |
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| Q |
216 |
tatacaacgcgtgcccgacactgagacac |
244 |
Q |
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|||| ||||||||||||||||||| |||| |
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| T |
4880899 |
tatataacgcgtgcccgacactgaaacac |
4880871 |
T |
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