View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20174_low_7 (Length: 496)
Name: NF20174_low_7
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20174_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 19 - 491
Target Start/End: Complemental strand, 7047482 - 7047010
Alignment:
| Q |
19 |
ggtgctatggttggagcaatagctagtggtcaaattgctgagtatatggggcgcaaaggggtaaccccttttcttcttttcttgtattacattgtatatg |
118 |
Q |
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| T |
7047482 |
ggtgctatggttggagcaatagccagtggtcaaattgctgagtatatggggcgcaaaggggtaaccccttttcttcttttcttgtattacattgtatatg |
7047383 |
T |
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| Q |
119 |
taaatatgtatttttcctttacttagatttttgaaggctaagacttattaccaaattcattgttatctaaaattgcagtctttgatgattgcatccattc |
218 |
Q |
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| T |
7047382 |
taaatatgtatttttcctttacttagattttttaaggctaagactgattaccaaattcattgttatctaaaattgcagtctttgatgattgcatccattc |
7047283 |
T |
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| Q |
219 |
ccaatattattggttggttgatgatctcatttgcaaatgtaagtttgaatcattttgatttttgctcaatttccttaagttcttattttcccgagtttgg |
318 |
Q |
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| T |
7047282 |
ccaatattattggttggttgatgatctcatttgcaaatgtaagtttgaatcattttgattttttctcaatttccttaagttcttattttcctgagtttgg |
7047183 |
T |
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| Q |
319 |
tattcataacatgttttgcatttgtacacagagatgtcaactcaatggtaagtgtttgaccttatagcctcaagggaccgagttcaaatccctacggtga |
418 |
Q |
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| T |
7047182 |
tattcataacatgttttgcatttgtacacggagatgtcaactcagtagtaagtgtttgaccttataacctcaagggaccgagttcaaatccctatggtga |
7047083 |
T |
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| Q |
419 |
taaaacgactattagtgttacttcaattaataacataacaatatttgcatctttcaggattcttcttctctct |
491 |
Q |
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| T |
7047082 |
taaaacgactattagtgttacttcaattaataacataacaatatttgcatctttcaggattcttcttttctct |
7047010 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 409
Target Start/End: Original strand, 41337654 - 41337709
Alignment:
| Q |
353 |
tgtcaactcaatggtaagtgtttgaccttatagcctcaagggaccgagttcaaatcc |
409 |
Q |
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| T |
41337654 |
tgtcagctcagtggtaagagtttgaccttataacctcaaggg-cggagttcaaatcc |
41337709 |
T |
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