View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20174_low_9 (Length: 456)

Name: NF20174_low_9
Description: NF20174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20174_low_9
NF20174_low_9
[»] chr4 (3 HSPs)
chr4 (1-373)||(41005840-41006211)
chr4 (278-338)||(55768963-55769023)
chr4 (278-338)||(55833219-55833279)
[»] chr8 (4 HSPs)
chr8 (234-310)||(45332029-45332105)
chr8 (240-338)||(25985178-25985274)
chr8 (242-324)||(8879984-8880066)
chr8 (361-435)||(13984170-13984244)
[»] chr5 (1 HSPs)
chr5 (241-336)||(35685493-35685588)
[»] chr3 (2 HSPs)
chr3 (241-392)||(48221367-48221517)
chr3 (358-392)||(15750821-15750855)
[»] chr7 (2 HSPs)
chr7 (241-296)||(48919066-48919121)
chr7 (354-390)||(24436558-24436594)
[»] chr1 (3 HSPs)
chr1 (241-296)||(27445576-27445631)
chr1 (361-444)||(34827770-34827853)
chr1 (240-296)||(7921605-7921661)
[»] chr2 (2 HSPs)
chr2 (241-294)||(45368173-45368226)
chr2 (241-337)||(11992655-11992751)
[»] scaffold0286 (1 HSPs)
scaffold0286 (361-393)||(169-201)
[»] chr6 (4 HSPs)
chr6 (361-393)||(2208070-2208102)
chr6 (361-393)||(5258818-5258850)
chr6 (361-393)||(5631399-5631431)
chr6 (241-325)||(9706425-9706509)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 41006211 - 41005840
Alignment:
Q  1 aattctattatgtcttagtgcacaccaaacataacatcctcatctttgttagannnnnnnnnnnctcgtgttggtcatttattatccaacattttgtgat 100  Q
    |||||| ||||||||||||||||| | ||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||    
T  41006211 aattcttttatgtcttagtgcacatccaacataacatcctcatctttgttagacttgttttattctcgtgttggtcatttattatccaacattttgtgat 41006112  T
Q  101 tgcccacacatacaccaccgccgatcttacatctacatgatnnnnnnnn--tcccctccaacttaagggggactttagatcgcataaaacacgtgagatc 198  Q
    || ||||||||||| |||||||||||||||||| |||||||          | |||||||||||||||||||||||| ||||||||||||||||||||||    
T  41006111 tgtccacacatacaacaccgccgatcttacatccacatgataaaaaaaaaattccctccaacttaagggggactttatatcgcataaaacacgtgagatc 41006012  T
Q  199 ctcttcttttcaaccactctaattgaattatataatttacaccttctatttctccatcgttttgaagtatgaatccaacatatttaaaccgtgtaactag 298  Q
    ||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||    
T  41006011 ctcttcttttcaaccactctacttgaattctataatttacacattctatttctccatcgttttgaactatgaat-caacatattttaaccgtgtaactag 41005913  T
Q  299 tgatatgacatgctctttaactttcatttctaagctagaattaccacannnnnnngttaaaattacattccatat 373  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||       ||||||||||||||||||||    
T  41005912 tgatatgacatgctctttaactttcatttctaagctagaaatactaca--tttttgttaaaattacattccatat 41005840  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 338
Target Start/End: Original strand, 55768963 - 55769023
Alignment:
Q  278 atatttaaaccgtgtaactagtgatatgacatgctctttaactttcatttctaagctagaa 338  Q
    ||||||||||||||| ||| ||| ||||||||| |||| ||||||||  |||||| |||||    
T  55768963 atatttaaaccgtgttacttgtggtatgacatgatcttcaactttcacctctaaggtagaa 55769023  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 338
Target Start/End: Original strand, 55833219 - 55833279
Alignment:
Q  278 atatttaaaccgtgtaactagtgatatgacatgctctttaactttcatttctaagctagaa 338  Q
    ||||||||||||||| ||| ||| ||||||||| |||| ||||||||  |||||| |||||    
T  55833219 atatttaaaccgtgttacttgtggtatgacatgatcttcaactttcacctctaaggtagaa 55833279  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 45332029 - 45332105
Alignment:
Q  234 tttacaccttctatttctccatcgttttgaagtatgaatccaacatatttaaaccgtgtaactagtgatatgacatg 310  Q
    |||||| || ||||||||||| ||||||| | |||||| |||  ||||||||||||||||||| ||| |||||||||    
T  45332029 tttacatctcctatttctccaccgttttgtactatgaagccaggatatttaaaccgtgtaacttgtggtatgacatg 45332105  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 338
Target Start/End: Complemental strand, 25985274 - 25985178
Alignment:
Q  240 ccttctatttctccatcgttttgaagtatgaatccaacatatttaaaccgtgtaactagtgatatgacatgctctttaactttcatttctaagctagaa 338  Q
    ||||||||||||||||  ||||| | |||  |||||| ||||||||||||||||||| ||| ||||| ||| ||   ||||||||  ||||||||||||    
T  25985274 ccttctatttctccatatttttgtactatagatccaatatatttaaaccgtgtaacttgtggtatgatatgatc--caactttcacctctaagctagaa 25985178  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 8879984 - 8880066
Alignment:
Q  242 ttctatttctccatcgttttgaagtatgaatccaacatatttaaaccgtgtaactagtgatatgacatgctctttaactttca 324  Q
    |||||||||||| || ||||| | |||||  |||| ||||||||||||||||||| | ||||||| ||| | || ||||||||    
T  8879984 ttctatttctccttcattttgtactatgagcccaagatatttaaaccgtgtaacttgggatatgatatgattttcaactttca 8880066  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 435
Target Start/End: Complemental strand, 13984244 - 13984170
Alignment:
Q  361 ttacattccatatactttgtcttacttctactcgttaggaagtcatatgctttcaaggcctgtctccaaatctct 435  Q
    |||||||||||||||| |||||| ||||||||| |  ||||||||||  |||  ||||| ||||||||| |||||    
T  13984244 ttacattccatatactctgtcttgcttctactcatgcggaagtcatacacttctaaggcttgtctccaagtctct 13984170  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 336
Target Start/End: Complemental strand, 35685588 - 35685493
Alignment:
Q  241 cttctatttctccatcgttttgaagtatgaatccaacatatttaaaccgtgtaactagtgatatgacatgctctttaactttcatttctaagctag 336  Q
    ||||||||||||  || ||||| | ||| ||||||| ||||||||||  ||| ||| ||||||||| |||||||| |||||| | |||||||||||    
T  35685588 cttctatttctctttcattttgtactataaatccaatatatttaaactatgttacttgtgatatgatatgctcttcaactttgacttctaagctag 35685493  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 392
Target Start/End: Complemental strand, 48221517 - 48221367
Alignment:
Q  241 cttctatttctccatcgttttgaagtatgaatccaacatatttaaaccgtgtaactagtgatatgacatgctctttaactttcatttctaagctagaatt 340  Q
    |||||| |||||  || ||||| | ||||||||||| |||||||||  |||||||| ||| ||||| ||| |||| ||||||||  |||||| ||||| |    
T  48221517 cttctacttctctgtcattttgtactatgaatccaagatatttaaaatgtgtaacttgtggtatgatatgatcttcaactttcacctctaagatagaact 48221418  T
Q  341 accacannnnnnngttaaaattacattccatatactttgtcttacttctact 392  Q
    || |||       | | |||||||||| |||||||| |||||||||||||||    
T  48221417 actaca-ccttttgctgaaattacattacatatactatgtcttacttctact 48221367  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 392
Target Start/End: Complemental strand, 15750855 - 15750821
Alignment:
Q  358 aaattacattccatatactttgtcttacttctact 392  Q
    ||||||||||||||||||||| |||||||||||||    
T  15750855 aaattacattccatatactttatcttacttctact 15750821  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 296
Target Start/End: Complemental strand, 48919121 - 48919066
Alignment:
Q  241 cttctatttctccatcgttttgaagtatgaatccaacatatttaaaccgtgtaact 296  Q
    ||||||||||||| || ||||| | |||| |||||| |||||||||||||||||||    
T  48919121 cttctatttctccgtcattttgtactatggatccaaaatatttaaaccgtgtaact 48919066  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 390
Target Start/End: Original strand, 24436558 - 24436594
Alignment:
Q  354 gttaaaattacattccatatactttgtcttacttcta 390  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  24436558 gttaaaattacatttcatatactttgtcttgcttcta 24436594  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 296
Target Start/End: Complemental strand, 27445631 - 27445576
Alignment:
Q  241 cttctatttctccatcgttttgaagtatgaatccaacatatttaaaccgtgtaact 296  Q
    |||||||||||||||| ||||| | |||| | |||||||| |||||||||||||||    
T  27445631 cttctatttctccatcattttgtactatggacccaacataattaaaccgtgtaact 27445576  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 444
Target Start/End: Original strand, 34827770 - 34827853
Alignment:
Q  361 ttacattccatatactttgtcttacttctactcgttaggaagtcatatgctttcaaggcctgtctccaaatctctgacctccca 444  Q
    |||||||||||||||||||||||| |||||||   | | |||||||| ||||  ||||| |||||| || ||||| ||||||||    
T  34827770 ttacattccatatactttgtcttagttctacttagtcgaaagtcataggcttctaaggcttgtctctaagtctctaacctccca 34827853  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 7921661 - 7921605
Alignment:
Q  240 ccttctatttctccatcgttttgaagtatgaatccaacatatttaaaccgtgtaact 296  Q
    ||||||||||||| ||||||||| | |||| |||||| |||| |||| |||||||||    
T  7921661 ccttctatttctcaatcgttttgtactatggatccaagatatataaatcgtgtaact 7921605  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 45368173 - 45368226
Alignment:
Q  241 cttctatttctccatcgttttgaagtatgaatccaacatatttaaaccgtgtaa 294  Q
    |||||||||||||||| ||||| | |||| | |||| |||||||||||||||||    
T  45368173 cttctatttctccatcattttgtattatggacccaagatatttaaaccgtgtaa 45368226  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 337
Target Start/End: Original strand, 11992655 - 11992751
Alignment:
Q  241 cttctatttctccatcgttttgaagtatgaatccaacatatttaaaccgtgtaactagtgatatgacatgctctttaactttcatttctaagctaga 337  Q
    |||||||||||||||| ||||| | |||  | |||| ||||||||||||||||||| | | ||||| ||| |||  ||||||||  |||||| ||||    
T  11992655 cttctatttctccatcattttgtactatagacccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctctaaggtaga 11992751  T

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Target: scaffold0286 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 393
Target Start/End: Original strand, 169 - 201
Alignment:
Q  361 ttacattccatatactttgtcttacttctactc 393  Q
    |||||||||||||| ||||||||||||||||||    
T  169 ttacattccatatattttgtcttacttctactc 201  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 393
Target Start/End: Original strand, 2208070 - 2208102
Alignment:
Q  361 ttacattccatatactttgtcttacttctactc 393  Q
    |||||||||||||| ||||||||||||||||||    
T  2208070 ttacattccatatattttgtcttacttctactc 2208102  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 393
Target Start/End: Original strand, 5258818 - 5258850
Alignment:
Q  361 ttacattccatatactttgtcttacttctactc 393  Q
    ||||||||||||||||||||||| |||||||||    
T  5258818 ttacattccatatactttgtcttgcttctactc 5258850  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 393
Target Start/End: Complemental strand, 5631431 - 5631399
Alignment:
Q  361 ttacattccatatactttgtcttacttctactc 393  Q
    ||||||||||||||||||||||| |||||||||    
T  5631431 ttacattccatatactttgtcttgcttctactc 5631399  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 325
Target Start/End: Complemental strand, 9706509 - 9706425
Alignment:
Q  241 cttctatttctccatcgttttgaagtatgaatccaacatatttaaaccgtgtaactagtgatatgacatgctctttaactttcat 325  Q
    |||||||||||||||| ||||| |  ||| | |||| ||||||||||||||||||| | | ||||| ||| |||  |||||||||    
T  9706509 cttctatttctccatcattttgtaccatggacccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcat 9706425  T

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