View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20175_high_1 (Length: 751)

Name: NF20175_high_1
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20175_high_1
NF20175_high_1
[»] chr6 (6 HSPs)
chr6 (476-735)||(10668291-10668563)
chr6 (271-318)||(26293485-26293532)
chr6 (263-313)||(16431583-16431633)
chr6 (263-318)||(10067646-10067702)
chr6 (153-191)||(8161450-8161488)
chr6 (254-319)||(24285099-24285165)
[»] chr8 (8 HSPs)
chr8 (159-319)||(10708436-10708593)
chr8 (157-320)||(21145492-21145652)
chr8 (129-190)||(3093935-3093996)
chr8 (270-315)||(26018687-26018732)
chr8 (268-318)||(16338265-16338315)
chr8 (129-191)||(29911559-29911621)
chr8 (269-314)||(2987008-2987053)
chr8 (271-312)||(42659934-42659975)
[»] chr2 (4 HSPs)
chr2 (264-320)||(39002941-39002997)
chr2 (129-191)||(29926871-29926933)
chr2 (271-318)||(7165689-7165736)
chr2 (269-318)||(6788345-6788394)
[»] chr1 (7 HSPs)
chr1 (268-319)||(5043426-5043477)
chr1 (244-315)||(6541132-6541204)
chr1 (270-318)||(27463840-27463888)
chr1 (161-320)||(34826889-34827045)
chr1 (261-313)||(32743254-32743306)
chr1 (134-191)||(3728097-3728154)
chr1 (125-190)||(41730128-41730193)
[»] chr3 (5 HSPs)
chr3 (268-315)||(34979107-34979154)
chr3 (129-191)||(43838806-43838868)
chr3 (268-314)||(35118694-35118740)
chr3 (369-439)||(36080823-36080893)
chr3 (158-191)||(33756703-33756736)
[»] chr5 (6 HSPs)
chr5 (128-191)||(9572682-9572744)
chr5 (129-182)||(6217635-6217688)
chr5 (125-191)||(7756655-7756721)
chr5 (366-439)||(6217380-6217453)
chr5 (125-190)||(7756959-7757024)
chr5 (162-191)||(9572514-9572543)
[»] chr4 (13 HSPs)
chr4 (129-225)||(46217157-46217253)
chr4 (369-439)||(6364962-6365032)
chr4 (129-190)||(51234447-51234508)
chr4 (270-314)||(7616900-7616944)
chr4 (263-315)||(11839896-11839948)
chr4 (128-191)||(9297411-9297474)
chr4 (271-318)||(13834452-13834499)
chr4 (244-314)||(48973309-48973380)
chr4 (125-191)||(24806713-24806778)
chr4 (246-315)||(29116293-29116363)
chr4 (158-191)||(5979423-5979456)
chr4 (254-318)||(9297476-9297541)
chr4 (158-191)||(11358538-11358571)
[»] chr7 (6 HSPs)
chr7 (235-320)||(10228823-10228909)
chr7 (257-293)||(12849575-12849611)
chr7 (263-314)||(26905145-26905196)
chr7 (270-315)||(18942866-18942911)
chr7 (277-314)||(24325470-24325507)
chr7 (366-439)||(25618190-25618263)
[»] scaffold0050 (1 HSPs)
scaffold0050 (125-182)||(81554-81611)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 476 - 735
Target Start/End: Original strand, 10668291 - 10668563
Alignment:
Q  476 tttcaactgttcattgcattcaaaagaggtaaagattattgaaatccgtactctcatttgtatctttccttctactttcagatccaaacaatgtgttaat 575  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10668291 tttcaactgttcattgcattcaaaagagggaaagattattgaaatccgtactctcatttgtatctttccttctactttcagatccaaacaatgtgttgat 10668390  T
Q  576 gtccactgaatattattattctatatcctaggattatccataatttaatcttatatttccaaactccagataaaatataggttataacagaaac------ 669  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  10668391 gtccgctgaatattattattctatatcctaggattatccataatttaatcttatatttccaaactccagataaaatataggttataacagaaacgagggt 10668490  T
Q  670 -------gagccactcaatgagctattggaatgtggtatagagttgaaaatacttcttggcagcgaggatact 735  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10668491 attgccagagccactcaatgagctattggaatgtggtatagagttgaaaatacttcttggcagcgaggatact 10668563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 26293485 - 26293532
Alignment:
Q  271 tgacaataagtaagtatattgaatgaccaatataataatattaacaaa 318  Q
    |||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  26293485 tgacaataagtatgtatattgaatgactaatatgataatattaacaaa 26293532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 16431583 - 16431633
Alignment:
Q  263 gacttatatgacaataagtaagtatattgaatgaccaatataataatatta 313  Q
    |||| |||||||||||||||||||||||||||||| ||||| | |||||||    
T  16431583 gactgatatgacaataagtaagtatattgaatgactaatatgacaatatta 16431633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 10067646 - 10067702
Alignment:
Q  263 gacttatatgacaa-taagtaagtatattgaatgaccaatataataatattaacaaa 318  Q
    |||| ||||||||| ||||||||||||||||||||| ||||| | ||||||||||||    
T  10067646 gactgatatgacaaataagtaagtatattgaatgactaatatgacaatattaacaaa 10067702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 191
Target Start/End: Complemental strand, 8161488 - 8161450
Alignment:
Q  153 tatatttcgttagtcaaaatagtctttgacgttaaaata 191  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  8161488 tatattttgttagtcaaaatagtttttgacgttaaaata 8161450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 24285165 - 24285099
Alignment:
Q  254 tatttataag-acttatatgacaataagtaagtatattgaatgaccaatataataatattaacaaaa 319  Q
    |||||||||| ||| |||||| |||||||||||||||| |||||  ||||| | |||||||||||||    
T  24285165 tatttataaggactgatatgataataagtaagtatattaaatgattaatatgacaatattaacaaaa 24285099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 8e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 159 - 319
Target Start/End: Original strand, 10708436 - 10708593
Alignment:
Q  159 tcgttagtcaaaatagtctttgacgttaaaatannnnnnnaatactggcattaactcttttcatatagagataaatatgatagtaaataagtacttattt 258  Q
    |||||||||||||||||||||||||||||||||       ||||| | ||||||| ||||| |||||| |||  ||||||| || |||||||||||||      
T  10708436 tcgttagtcaaaatagtctttgacgttaaaatagtttttcaataccgacattaaccctttttatatagggattgatatgattgttaataagtacttat-- 10708533  T
Q  259 ataagacttatatgacaataagtaagtatattgaatgaccaatataataatattaacaaaa 319  Q
      | |||  || ||| ||||| ||||||||||||   || |||||||||||||||||||||    
T  10708534 -aatgaccgatgtgataataattaagtatattgaggaactaatataataatattaacaaaa 10708593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 157 - 320
Target Start/End: Complemental strand, 21145652 - 21145492
Alignment:
Q  157 tttcgttagtcaaaatagtctttgacgttaaaatannnnnnnaatactggcattaactcttttcatatagagataaatatgatagtaaataagtacttat 256  Q
    ||||||||||||||||||||| ||| |||||||||       ||| ||| ||||||||||||| |||||| ||   ||| || ||| | |||||||||||    
T  21145652 tttcgttagtcaaaatagtctctgatgttaaaatagtccctcaatgctgacattaactctttttatatagggactgataggacagtgagtaagtacttat 21145553  T
Q  257 ttataagacttatatgacaataagtaagtatattgaatgaccaatataataatattaacaaaac 320  Q
        | |||| |||||||| ||||||||||||||||  ||| ||||| ||||||||||| ||||    
T  21145552 a---aggactgatatgacagtaagtaagtatattgagagactaatatgataatattaacgaaac 21145492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 3093996 - 3093935
Alignment:
Q  129 aaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaat 190  Q
    ||||||||||||||||  ||||| |||||| |||||||||||||| ||||| || |||||||    
T  3093996 aaattttaaaatagtctttaattttatattacgttagtcaaaataatctttaacattaaaat 3093935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 26018687 - 26018732
Alignment:
Q  270 atgacaataagtaagtatattgaatgaccaatataataatattaac 315  Q
    |||||||||||||||||||||||||||| ||||||| ||| |||||    
T  26018687 atgacaataagtaagtatattgaatgactaatataacaatgttaac 26018732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 268 - 318
Target Start/End: Original strand, 16338265 - 16338315
Alignment:
Q  268 atatgacaataagtaagtatattgaatgaccaatataataatattaacaaa 318  Q
    |||||||||||||||||||||||||  ||| ||||| | ||||||||||||    
T  16338265 atatgacaataagtaagtatattgatggacaaatatgacaatattaacaaa 16338315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 29911621 - 29911559
Alignment:
Q  129 aaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaata 191  Q
    ||||||||||||||| ||||| | |  | |||||||||||||||||||| | |||||||||||    
T  29911621 aaattttaaaatagttcataagtgtccacttcgttagtcaaaatagtctctaacgttaaaata 29911559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 314
Target Start/End: Complemental strand, 2987053 - 2987008
Alignment:
Q  269 tatgacaataagtaagtatattgaatgaccaatataataatattaa 314  Q
    ||||||||||||||||||||||||| ||| ||||| ||| ||||||    
T  2987053 tatgacaataagtaagtatattgaaagactaatatgatagtattaa 2987008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 42659975 - 42659934
Alignment:
Q  271 tgacaataagtaagtatattgaatgaccaatataataatatt 312  Q
    ||||||||||||||||||||||||||| ||||| | ||||||    
T  42659975 tgacaataagtaagtatattgaatgactaatatgacaatatt 42659934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 39002997 - 39002941
Alignment:
Q  264 acttatatgacaataagtaagtatattgaatgaccaatataataatattaacaaaac 320  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||    
T  39002997 acttatatgacaataagtaagtatattgaatgactaatataataattttaacgaaac 39002941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 29926933 - 29926871
Alignment:
Q  129 aaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaata 191  Q
    |||||||||||||||| || ||| |  ||||| ||||||||||||||||||||||||||||||    
T  29926933 aaattttaaaatagtcaatgattgtgcatttcattagtcaaaatagtctttgacgttaaaata 29926871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 7165736 - 7165689
Alignment:
Q  271 tgacaataagtaagtatattgaatgaccaatataataatattaacaaa 318  Q
    ||||||||||||||||||||||| ||| ||||| | ||||||||||||    
T  7165736 tgacaataagtaagtatattgaaagactaatatgaaaatattaacaaa 7165689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 318
Target Start/End: Complemental strand, 6788394 - 6788345
Alignment:
Q  269 tatgacaataagtaagtatattgaatgaccaatataataatattaacaaa 318  Q
    ||||| ||||||||||||||||||||||| | ||| | ||||||||||||    
T  6788394 tatgataataagtaagtatattgaatgactagtatgacaatattaacaaa 6788345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 268 - 319
Target Start/End: Original strand, 5043426 - 5043477
Alignment:
Q  268 atatgacaataagtaagtatattgaatgaccaatataataatattaacaaaa 319  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  5043426 atatgacaataaataagtatattgaatgaccaatataacaatattaacaaaa 5043477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 244 - 315
Target Start/End: Complemental strand, 6541204 - 6541132
Alignment:
Q  244 aataagtacttatttataa-gacttatatgacaataagtaagtatattgaatgaccaatataataatattaac 315  Q
    ||||||||  ||||||||| |||| |||||||||||||||||||||||||| ||| ||||| | |||||||||    
T  6541204 aataagtaagtatttataaagactgatatgacaataagtaagtatattgaaggactaatatgacaatattaac 6541132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 27463840 - 27463888
Alignment:
Q  270 atgacaataagtaagtatattgaatgaccaatataataatattaacaaa 318  Q
    |||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  27463840 atgacaataagtaagtatattgaaagactaatataacaatattaacaaa 27463888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 320
Target Start/End: Original strand, 34826889 - 34827045
Alignment:
Q  161 gttagtcaaaatagtctttgacgttaaaatannnnnnnaatactggcattaactcttttcatatagagataaatatgatagtaaataagtacttatttat 260  Q
    |||||||||||||||||||||||||||||||       ||| ||  || ||||| |||||||||||  |   | |||| | ||| |||||||||||        
T  34826889 gttagtcaaaatagtctttgacgttaaaataatctcttaatgctcacaataacttttttcatataggaaccgaaatgacaataagtaagtacttat---- 34826984  T
Q  261 aag-acttatatgacaataagtaagtatattgaatgaccaatataataatattaacaaaac 320  Q
    ||| ||| |||||||||||| ||||||||||||||||| ||||| | ||||||||| ||||    
T  34826985 aagtactgatatgacaataaataagtatattgaatgactaatatgacaatattaacgaaac 34827045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 32743254 - 32743306
Alignment:
Q  261 aagacttatatgacaataagtaagtatattgaatgaccaatataataatatta 313  Q
    |||||| |||||||| ||||||||||||||||||||  ||||||| |||||||    
T  32743254 aagactgatatgacagtaagtaagtatattgaatgattaatataagaatatta 32743306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 3728097 - 3728154
Alignment:
Q  134 ttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaata 191  Q
    |||||||||||||| ||| | ||||  ||||||||||||||||| | |||||||||||    
T  3728097 ttaaaatagtccatgattgtgtattatgttagtcaaaatagtctcttacgttaaaata 3728154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 41730193 - 41730128
Alignment:
Q  125 attgaaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaat 190  Q
    |||||||||||||||||||   |||||||  ||||||||||| || ||||||||| | ||||||||    
T  41730193 attgaaattttaaaatagtgtttaattatgcatttcgttagttaagatagtctttaaagttaaaat 41730128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 268 - 315
Target Start/End: Original strand, 34979107 - 34979154
Alignment:
Q  268 atatgacaataagtaagtatattgaatgaccaatataataatattaac 315  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||    
T  34979107 atatgacaataagtaagtatattgaatgactaatatgataatattaac 34979154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 43838868 - 43838806
Alignment:
Q  129 aaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaata 191  Q
    ||||||||||||||||  | ||| |  |||| |||||||||||||||||||||||||||||||    
T  43838868 aaattttaaaatagtcattgattgtgcattttgttagtcaaaatagtctttgacgttaaaata 43838806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 268 - 314
Target Start/End: Original strand, 35118694 - 35118740
Alignment:
Q  268 atatgacaataagtaagtatattgaatgaccaatataataatattaa 314  Q
    ||||| |||||||||||||||||||||||  ||||||||| ||||||    
T  35118694 atatgtcaataagtaagtatattgaatgaataatataatagtattaa 35118740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 369 - 439
Target Start/End: Original strand, 36080823 - 36080893
Alignment:
Q  369 tttaaaattttgatacattaaataattactgtgactaatatttacacattcataaatcaaaatgattatta 439  Q
    |||||||||||||||||||||| || || |||||||||   ||||||||| |  ||||||||||| |||||    
T  36080823 tttaaaattttgatacattaaaaaactattgtgactaaccattacacattgaggaatcaaaatgactatta 36080893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 33756703 - 33756736
Alignment:
Q  158 ttcgttagtcaaaatagtctttgacgttaaaata 191  Q
    |||| |||||||||||||||||||||||||||||    
T  33756703 ttcgatagtcaaaatagtctttgacgttaaaata 33756736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 9572744 - 9572682
Alignment:
Q  128 gaaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaata 191  Q
    |||||||||||||||||  | ||| |||||| ||||||||||| ||||||||||||||||||||    
T  9572744 gaaattttaaaatagtcatttattgtatattacgttagtcaaa-tagtctttgacgttaaaata 9572682  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 6217688 - 6217635
Alignment:
Q  129 aaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgac 182  Q
    |||||| |||||||||||| |||||  | |||||||||||||||||||||||||    
T  6217688 aaatttcaaaatagtccatgattatgcacttcgttagtcaaaatagtctttgac 6217635  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 7756721 - 7756655
Alignment:
Q  125 attgaaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaata 191  Q
    |||||||||| ||||||||| || ||| || | |||||||||||||||||||| |  ||||||||||    
T  7756721 attgaaatttcaaaatagtcaatgattgtacaattcgttagtcaaaatagtctctcgcgttaaaata 7756655  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 366 - 439
Target Start/End: Complemental strand, 6217453 - 6217380
Alignment:
Q  366 tattttaaaattttgatacattaaataattactgtgactaatatttacacattcataaatcaaaatgattatta 439  Q
    |||||||||||||||||||||||| | | || ||| |||| | |||||| ||||| |||||||| ||| |||||    
T  6217453 tattttaaaattttgatacattaagtgactattgtaactactttttacatattcaaaaatcaaattgactatta 6217380  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 7756959 - 7757024
Alignment:
Q  125 attgaaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaat 190  Q
    ||||||||||||||||||||| ||||  |  |||| ||||||||||||||||| | || |||||||    
T  7756959 attgaaattttaaaatagtccttaatcgttgattttgttagtcaaaatagtctctaacattaaaat 7757024  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 191
Target Start/End: Original strand, 9572514 - 9572543
Alignment:
Q  162 ttagtcaaaatagtctttgacgttaaaata 191  Q
    ||||||||||||||||||||||||||||||    
T  9572514 ttagtcaaaatagtctttgacgttaaaata 9572543  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 225
Target Start/End: Complemental strand, 46217253 - 46217157
Alignment:
Q  129 aaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaatannnnnnnaatactggcattaactcttttcatata 225  Q
    ||||| ||||||||||  | ||| | ||||||||||||||||||||||||| |||| ||||||       ||| ||| |||||||||||||||||||    
T  46217253 aaattataaaatagtcattgattgtgtatttcgttagtcaaaatagtctttaacgtcaaaataatctctcaatgctgacattaactcttttcatata 46217157  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 369 - 439
Target Start/End: Original strand, 6364962 - 6365032
Alignment:
Q  369 tttaaaattttgatacattaaataattactgtgactaatatttacacattcataaatcaaaatgattatta 439  Q
    |||||||||||| |||||||||  |||| |||||||| || ||||||||||| | || |||||||||||||    
T  6364962 tttaaaattttgttacattaaaagattattgtgactactagttacacattcaaagattaaaatgattatta 6365032  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 51234508 - 51234447
Alignment:
Q  129 aaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaat 190  Q
    ||||||||||||||||  ||| |||  |||||||||||||||||||||| ||| ||||||||    
T  51234508 aaattttaaaatagtctctaactatgcatttcgttagtcaaaatagtctctgatgttaaaat 51234447  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 7616944 - 7616900
Alignment:
Q  270 atgacaataagtaagtatattgaatgaccaatataataatattaa 314  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  7616944 atgacaataaataagtatattgaatgactaatatgataatattaa 7616900  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 11839948 - 11839896
Alignment:
Q  263 gacttatatgacaataagtaagtatattgaatgaccaatataataatattaac 315  Q
    ||||||||||||||||||||||| ||||||| ||| ||||| | |||||||||    
T  11839948 gacttatatgacaataagtaagtgtattgaaggactaatatgacaatattaac 11839896  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 9297411 - 9297474
Alignment:
Q  128 gaaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaata 191  Q
    |||||||||||||||||||| ||| |||| || |||||||||||| ||  ||||| ||||||||    
T  9297411 gaaattttaaaatagtccatgattttatactttgttagtcaaaattgttattgacattaaaata 9297474  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 13834499 - 13834452
Alignment:
Q  271 tgacaataagtaagtatattgaatgaccaatataataatattaacaaa 318  Q
    ||||||||||||||||||||||| ||| ||||| | ||||||||||||    
T  13834499 tgacaataagtaagtatattgaaggactaatatgacaatattaacaaa 13834452  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 48973309 - 48973380
Alignment:
Q  244 aataagtacttatttataag-acttatatgacaataagtaagtatattgaatgaccaatataataatattaa 314  Q
    ||||||||  |||||||||| ||  |||||||||||||||||||||||||| ||| ||||| | ||||||||    
T  48973309 aataagtaagtatttataaggaccgatatgacaataagtaagtatattgaaggactaatatgacaatattaa 48973380  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 24806778 - 24806713
Alignment:
Q  125 attgaaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgacgttaaaata 191  Q
    |||||||||| |||||||||| || |||| |||||| |||||||||||||||| | || ||||||||    
T  24806778 attgaaatttgaaaatagtcctta-ttatgtatttcattagtcaaaatagtctctaacattaaaata 24806713  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 246 - 315
Target Start/End: Original strand, 29116293 - 29116363
Alignment:
Q  246 taagtacttatttataag-acttatatgacaataagtaagtatattgaatgaccaatataataatattaac 315  Q
    |||||| ||||||||||| ||| |||||||||||| ||| |||||||||||||  ||||  ||||||||||    
T  29116293 taagtaattatttataaggactaatatgacaataaataaatatattgaatgacttatatgttaatattaac 29116363  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 5979423 - 5979456
Alignment:
Q  158 ttcgttagtcaaaatagtctttgacgttaaaata 191  Q
    |||||||||||||||||||| |||||||||||||    
T  5979423 ttcgttagtcaaaatagtctctgacgttaaaata 5979456  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 9297541 - 9297476
Alignment:
Q  254 tatttataag-acttatatgacaataagtaagtatattgaatgaccaatataataatattaacaaa 318  Q
    |||||||||| ||| |||||| ||||| |||||||||| |||||| ||||| | ||||||||||||    
T  9297541 tatttataaggactgatatgataataaataagtatatttaatgactaatatgacaatattaacaaa 9297476  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 11358538 - 11358571
Alignment:
Q  158 ttcgttagtcaaaatagtctttgacgttaaaata 191  Q
    |||||||||||||||||||| |||||||||||||    
T  11358538 ttcgttagtcaaaatagtctctgacgttaaaata 11358571  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 235 - 320
Target Start/End: Complemental strand, 10228909 - 10228823
Alignment:
Q  235 atgatagtaaataagtacttatttataaga-cttatatgacaataagtaagtatattgaatgaccaatataataatattaacaaaac 320  Q
    |||||||||| ||| ||  ||||||||||| ||||||||||||||| ||||||||||||| ||| |||||   ||| ||||||||||    
T  10228909 atgatagtaagtaaataaatatttataagaacttatatgacaataattaagtatattgaaggactaatatgtaaattttaacaaaac 10228823  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 12849611 - 12849575
Alignment:
Q  257 ttataagacttatatgacaataagtaagtatattgaa 293  Q
    ||||||||||||||| |||||||||||||||||||||    
T  12849611 ttataagacttatataacaataagtaagtatattgaa 12849575  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 263 - 314
Target Start/End: Original strand, 26905145 - 26905196
Alignment:
Q  263 gacttatatgacaataagtaagtatattgaatgaccaatataataatattaa 314  Q
    |||| |||||||||||||||||||||||||| ||  ||||| ||||||||||    
T  26905145 gactaatatgacaataagtaagtatattgaaggaataatatgataatattaa 26905196  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 18942911 - 18942866
Alignment:
Q  270 atgacaataagtaagtatattgaatgaccaatataataatattaac 315  Q
    |||||||||||||||||||||||||||  ||||| | |||||||||    
T  18942911 atgacaataagtaagtatattgaatgattaatatgacaatattaac 18942866  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 277 - 314
Target Start/End: Complemental strand, 24325507 - 24325470
Alignment:
Q  277 taagtaagtatattgaatgaccaatataataatattaa 314  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  24325507 taagtaagtatattgaaggaccaatatgataatattaa 24325470  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 366 - 439
Target Start/End: Original strand, 25618190 - 25618263
Alignment:
Q  366 tattttaaaattttgatacattaaataattactgtgactaatatttacacattcataaatcaaaatgattatta 439  Q
    |||||||||||||| |||||||  | || |||||||||||||  |||||||||||  || |||||| |||||||    
T  25618190 tattttaaaattttaatacattgcaaaactactgtgactaatcgttacacattcaagaaccaaaataattatta 25618263  T

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Target: scaffold0050 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 81611 - 81554
Alignment:
Q  125 attgaaattttaaaatagtccataattatatatttcgttagtcaaaatagtctttgac 182  Q
    |||||||||||||||||||||||||||||     |||||||||||||||||| |||||    
T  81611 attgaaattttaaaatagtccataattatgctcatcgttagtcaaaatagtccttgac 81554  T

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