View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20175_high_10 (Length: 464)

Name: NF20175_high_10
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20175_high_10
NF20175_high_10
[»] chr7 (6 HSPs)
chr7 (102-370)||(37616794-37617062)
chr7 (102-370)||(36828785-36829052)
chr7 (111-370)||(4554599-4554857)
chr7 (134-377)||(4968051-4968304)
chr7 (143-376)||(43282624-43282867)
chr7 (209-275)||(18713225-18713292)
[»] scaffold0044 (1 HSPs)
scaffold0044 (102-368)||(82914-83179)
[»] chr1 (8 HSPs)
chr1 (102-304)||(8113781-8113983)
chr1 (130-380)||(24765181-24765441)
chr1 (134-370)||(47974931-47975166)
chr1 (255-375)||(23894570-23894690)
chr1 (218-329)||(125284-125395)
chr1 (267-376)||(20010614-20010722)
chr1 (209-331)||(325836-325959)
chr1 (374-433)||(6865260-6865319)
[»] chr8 (2 HSPs)
chr8 (134-370)||(10289539-10289774)
chr8 (134-376)||(43266157-43266398)
[»] chr5 (3 HSPs)
chr5 (148-369)||(35228096-35228317)
chr5 (134-370)||(33672110-33672346)
chr5 (256-338)||(21286114-21286196)
[»] chr2 (5 HSPs)
chr2 (134-377)||(1658619-1658861)
chr2 (252-370)||(22710220-22710338)
chr2 (256-370)||(38432075-38432187)
chr2 (215-275)||(8148771-8148831)
chr2 (215-275)||(8153395-8153455)
[»] chr3 (6 HSPs)
chr3 (134-376)||(48663868-48664109)
chr3 (134-370)||(4100585-4100831)
chr3 (213-375)||(2994023-2994174)
chr3 (134-297)||(28160476-28160639)
chr3 (209-331)||(16900498-16900621)
chr3 (336-370)||(28160439-28160473)
[»] chr4 (3 HSPs)
chr4 (209-331)||(11057097-11057220)
chr4 (334-376)||(7199057-7199099)
chr4 (334-370)||(51470337-51470373)
[»] chr6 (1 HSPs)
chr6 (209-299)||(5319534-5319625)
[»] scaffold0101 (1 HSPs)
scaffold0101 (334-370)||(18548-18584)


Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 102 - 370
Target Start/End: Complemental strand, 37617062 - 37616794
Alignment:
Q  102 cggctgtgttctacgatggaatggatgaaagaaaatagggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaat 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37617062 cggctgtgttctacgatggaatggatgaaagaaaatagggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaat 37616963  T
Q  202 ttcgtttcgacccggaaaagcgggcgatttgacccgctaccgctctacgtaaagcggccgcgaaacccgattttggaccgcttttcccgaacgcgcgatg 301  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| |||||||    
T  37616962 ttcgtttcgacccggaaaagtgggcgatttgacccgctaccgctccacgtaaagcggccgcgaaacccggttttggaccgcttttccctaacacgcgatg 37616863  T
Q  302 cggtcgcgttctaacgcgctaggctgttttcagccgcgatcgcgccgcgttaggccgctattgacaaca 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37616862 cggtcgcgttctaacgcgctaggctgttttcagccgcgatcgcgccgcgttaggccgctattgacaaca 37616794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 102 - 370
Target Start/End: Original strand, 36828785 - 36829052
Alignment:
Q  102 cggctgtgttctacgatggaatggatgaaagaaaatagggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaat 201  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36828785 cggctgtgttctacgatggaatggatgaaagaaaataggactttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaat 36828884  T
Q  202 ttcgtttcgacccggaaaagcgggcgatttgacccgctaccgctctacgtaaagcggccgcgaaacccgattttggaccgcttttcccgaacgcgcgatg 301  Q
    |||||| ||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  36828885 ttcgtt-cgacctggaaaagcgggcgatttgacccgctaccgctccatgtaaagcggccgcgaaacccggttttggaccgcttttccctaacgcgcgatg 36828983  T
Q  302 cggtcgcgttctaacgcgctaggctgttttcagccgcgatcgcgccgcgttaggccgctattgacaaca 370  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36828984 cggtcgcgatctaacgcgctaggctgttttcagccgcgatcgcgccgcgttaggccgctattgacaaca 36829052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 111 - 370
Target Start/End: Original strand, 4554599 - 4554857
Alignment:
Q  111 tctacgatggaatggatgaaagaaaatagggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaatttcgtttcg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  4554599 tctacgatggaatggatgaaagaaaatagggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataattccataatttcgtttcg 4554698  T
Q  211 acccggaaaagcgggcgatttgacccgctaccgctctacgtaaagcggccgcgaaacccgattttggaccgcttttcccgaacgcgcgatgcggtcgcgt 310  Q
    | ||||||||||||| |||||||||||||||| ||| | ||||||||||||||||||||| |||||  |||||||| || |||||||||  |||||||||    
T  4554699 aaccggaaaagcgggtgatttgacccgctaccactccatgtaaagcggccgcgaaacccggttttgttccgcttttgcctaacgcgcgactcggtcgcgt 4554798  T
Q  311 tctaacgcgctaggctgttttcagccgcgatcgcgccgcgttaggccgctattgacaaca 370  Q
    ||| ||| ||||||||||||||||||||||||||||||| || |  ||||||||||||||    
T  4554799 tctgacg-gctaggctgttttcagccgcgatcgcgccgcatttgaacgctattgacaaca 4554857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 134 - 377
Target Start/End: Complemental strand, 4968304 - 4968051
Alignment:
Q  134 aaatagggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaatttcgtttcgacccggaaaagcgg-gcgatttg 232  Q
    |||||||| ||||||||| ||||||||||||||||||| || ||||||||||||| |||||  ||||||||| ||||||||||||| |||  ||| || |    
T  4968304 aaatagggttttgaaaattacaaaattaacccttctaatgtcacttaagtgaggggtaattctgtaatttcgcttcgacccggaaacgcgccgcg-ttag 4968206  T
Q  233 acccgctaccgctctacgtaaagcggccgcgaaacccgattttggaccgcttttcccgaacgcgcgatgcggtcgcgttctaacgcgctaggctgttttc 332  Q
    ||||||| | |||| ||| ||||||||||||||||||| ||||   |||||||| || ||||||||||||||||||||||| | ||||||||||||||||    
T  4968205 acccgctccagctccacgaaaagcggccgcgaaacccggttttcagccgcttttgcctaacgcgcgatgcggtcgcgttctgatgcgctaggctgttttc 4968106  T
Q  333 ag----------ccgcgatcgcgccgcgttaggccgctattgacaacaaaggttt 377  Q
    ||          |||||||||||||||||||||||||||||||||||| ||||||    
T  4968105 agccgctccgcgccgcgatcgcgccgcgttaggccgctattgacaacagaggttt 4968051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 143 - 376
Target Start/End: Complemental strand, 43282867 - 43282624
Alignment:
Q  143 tttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaatttcgtttcgacccggaaaagcgg-gcgatttgacccgctac 241  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||| |||||  ||||||||| ||||||||||||| |||  ||| || |||||||| |    
T  43282867 tttgaaaattacaaaattaacccttctaatgtcacttaagtgaggggtaattctgtaatttcgcttcgacccggaaacgcgccgcg-ttagacccgctcc 43282769  T
Q  242 cgctctacgtaaagcggccgcgaaacccgattttggaccgcttttcccgaacgcgcgatgcggtcgcgttctaacgcgctaggctgttttcag------- 334  Q
    ||||| ||| ||||| ||||||||||||| ||||   |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||           
T  43282768 cgctccacgaaaagcagccgcgaaacccggttttcagccgcttttgcctaacgcgcgatgcggtcgcgttctgacgcgctaggctgttttcagccgctcc 43282669  T
Q  335 ---ccgcgatcgcgccgcgttaggccgctattgacaacaaaggtt 376  Q
       |||||||||||||||||||||||||||||||||||| |||||    
T  43282668 gcgccgcgatcgcgccgcgttaggccgctattgacaacagaggtt 43282624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 18713225 - 18713292
Alignment:
Q  209 cgacccggaaaagcgggcgatttgacccgctaccgctctacgtaaa-gcggccgcgaaacccgatttt 275  Q
    ||||||||||||||||||||||||||||||| |||||| | ||||| |||||||||||||||| ||||    
T  18713225 cgacccggaaaagcgggcgatttgacccgctcccgctccaggtaaaggcggccgcgaaacccgctttt 18713292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 102 - 368
Target Start/End: Complemental strand, 83179 - 82914
Alignment:
Q  102 cggctgtgttctacgatggaatggatgaaagaaaatagggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaat 201  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  83179 cggctgtgttctacgatggaatggatgaaagaaaatagggttttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgttat 83080  T
Q  202 ttcgtttcgacccggaaaagcgggcgatttgacccgctaccgctctacgtaaagcggccgcgaaacccgattttggaccgcttttcccgaacgcgcgatg 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||| |||||||||||    
T  83079 ttcgtttcgacccggaaaagcgggcgatttgacccgctaccgctccacgtaaagcgcccgcgaaacccggttttggaccgcttttccctaacgcgcgatg 82980  T
Q  302 cggtcgcgttctaacgcgctaggctgttttcagccgcgatcgcgccgcgttaggccgctattgacaa 368  Q
     |||||||||||||||||||||||||||||| |||||   || ||||||||||||||||||||||||    
T  82979 tggtcgcgttctaacgcgctaggctgttttccgccgc-tccgagccgcgttaggccgctattgacaa 82914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 102 - 304
Target Start/End: Complemental strand, 8113983 - 8113781
Alignment:
Q  102 cggctgtgttctacgatggaatggatgaaagaaaatagggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaat 201  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8113983 cggctgtgttctacaatggaatggatgaaagaaaatagggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaat 8113884  T
Q  202 ttcgtttcgacccggaaaagcgggcgatttgacccgctaccgctctacgtaaagcggccgcgaaacccgattttggaccgcttttcccgaacgcgcgatg 301  Q
    |||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||  |||||||||| ||||||| |||||||||||    
T  8113883 ttcgtttcgatccggaaaagcgggcgatttgacccgctaccgctccatgtaaagcggccgcgaaacccagttttggaccgtttttccctaacgcgcgatg 8113784  T
Q  302 cgg 304  Q
    |||    
T  8113783 cgg 8113781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 130 - 380
Target Start/End: Complemental strand, 24765441 - 24765181
Alignment:
Q  130 aagaaaatagggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaatttcgtttcgacccggaaaagcgggcgat 229  Q
    |||||||||||| || |||||| |||||||||||||| |||| || |||||||||||||  |||||||||||||    ||||||||||||||||||||||    
T  24765441 aagaaaatagggtttggaaaattacaaaattaaccctactaatgtcacttaagtgaggggcaatttcgtaatttttggtcgacccggaaaagcgggcgat 24765342  T
Q  230 ttgacccgctaccgctctacgtaaagcggccgcgaaacccgattttggaccgcttttcccgaacgcgcgatgcggtcgcgttctaacgcgctaggctgtt 329  Q
    ||||||||||||||||| | | ||||||||| ||||| ||| ||| || |||||||| || |||||||| ||||||||||||||||||||||||||||||    
T  24765341 ttgacccgctaccgctccaggaaaagcggccacgaaaaccggtttaggtccgcttttgcctaacgcgcgttgcggtcgcgttctaacgcgctaggctgtt 24765242  T
Q  330 ttcag----------ccgcgatcgcgccgcgttaggccgctattgacaacaaaggtttgga 380  Q
    |||||          |||||||||||||||||||||||||||||||||||| |||||||||    
T  24765241 ttcagccgctccgcgccgcgatcgcgccgcgttaggccgctattgacaacagaggtttgga 24765181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 134 - 370
Target Start/End: Original strand, 47974931 - 47975166
Alignment:
Q  134 aaatagggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaatttcgtttcgacccggaaaagcgg-gcgatttg 232  Q
    |||||||||||||||||| ||||||||||||||||||| || ||||||||||||| |||||  ||||||||| ||||||||||||| |||  ||| || |    
T  47974931 aaatagggctttgaaaattacaaaattaacccttctaatgtcacttaagtgaggggtaattctgtaatttcgcttcgacccggaaacgcgccgcg-ttag 47975029  T
Q  233 acccgctaccgctctacgtaaagcggccgcgaaacccgattttggaccgcttttcccgaacgcgcgatgcggtcgcgttctaacgcgctaggctgttttc 332  Q
    ||||||| |||||| ||| ||||||||||||||||||| ||||   |||||||| || ||||||||||||||||||||||| ||||||||||||||||||    
T  47975030 acccgctcccgctccacgaaaagcggccgcgaaacccggttttcagccgcttttgcctaacgcgcgatgcggtcgcgttctgacgcgctaggctgttttc 47975129  T
Q  333 agccgcgatcgcgccgcgttaggccgctattgacaaca 370  Q
    ||||||   |||||||||||||||||||||||||||||    
T  47975130 agccgc-tccgcgccgcgttaggccgctattgacaaca 47975166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 255 - 375
Target Start/End: Original strand, 23894570 - 23894690
Alignment:
Q  255 gcggccgcgaaacccgattttggaccgcttttcccgaacgcgcgatgcggtcgcgttctaacgcgctaggctgttttcagccgcgatcgcgccgcgttag 354  Q
    |||||||||||||||| ||| |  |||||||| || |||||| ||  | |||||||||| ||||||||||||||||||||||||||||||||| | ||||    
T  23894570 gcggccgcgaaacccggtttcgttccgcttttgcctaacgcgtgactcagtcgcgttctgacgcgctaggctgttttcagccgcgatcgcgccacattag 23894669  T
Q  355 gccgctattgacaacaaaggt 375  Q
    |||||||||||||||| ||||    
T  23894670 gccgctattgacaacagaggt 23894690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 218 - 329
Target Start/End: Complemental strand, 125395 - 125284
Alignment:
Q  218 aaagcgggcgatttgacccgctaccgctctacgtaaagcggccgcgaaacccgattttggaccgcttttcccgaacgcgcgatgcggtcgcgttctaacg 317  Q
    ||||||| || |||||||||||||||||| | ||||||||||||||||||||| |||||  |||||||| || ||||| |||  |||||| ||||| |||    
T  125395 aaagcggccgctttgacccgctaccgctccatgtaaagcggccgcgaaacccggttttgttccgcttttgcctaacgcacgactcggtcgagttctgacg 125296  T
Q  318 cgctaggctgtt 329  Q
    ||||||||||||    
T  125295 cgctaggctgtt 125284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 267 - 376
Target Start/End: Original strand, 20010614 - 20010722
Alignment:
Q  267 cccgattttggaccgcttttcccgaacgcgcgatgcggtcgcgttctaacgcgctaggctgttttcagccgcgatcgcgccgcgttaggccgctattgac 366  Q
    |||| ||||||  ||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||   ||||||||||||| |||| ||||||    
T  20010614 cccggttttggtgcgcttttgcctaacgcgcgactcggtcgcgttctaacgcgctaggctgttttcagccgc-tccgcgccgcgttagcccgcaattgac 20010712  T
Q  367 aacaaaggtt 376  Q
    |||| |||||    
T  20010713 aacagaggtt 20010722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 209 - 331
Target Start/End: Original strand, 325836 - 325959
Alignment:
Q  209 cgacccggaaaagcgggcgatttgacccgctaccgctctacgtaaa-gcggccgcgaaacccgattttggaccgcttttcccgaacgcgcgatgcggtcg 307  Q
    |||||||||||||| |||||||||||||||| |||||| | ||||| |||||||||||||||| | |||  ||||||||||| |||||||||  |||  |    
T  325836 cgacccggaaaagcaggcgatttgacccgctcccgctccaggtaaaggcggccgcgaaacccgctattgacccgcttttccctaacgcgcgaatcgggtg 325935  T
Q  308 cgttctaacgcgctaggctgtttt 331  Q
    || ||| ||||| |||||||||||    
T  325936 cgctctgacgcggtaggctgtttt 325959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 374 - 433
Target Start/End: Complemental strand, 6865319 - 6865260
Alignment:
Q  374 gtttggaggtgttaatttcactatatactaccatgcattatattcttgaaaatactatgt 433  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  6865319 gtttggaggtgttaatttcaatatatactaccatgcattatattcttggaaatactatgt 6865260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 134 - 370
Target Start/End: Complemental strand, 10289774 - 10289539
Alignment:
Q  134 aaatagggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaatttcgtttcgacccggaaaagcgggcgatttga 233  Q
    |||||||||||||||||| ||||||||||||||||||| || ||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||    
T  10289774 aaatagggctttgaaaattacaaaattaacccttctaatgtcacttaagtgaggggtaattttgtaattttgtttcgacccggaaaagcgggcgatttga 10289675  T
Q  234 cccgctaccgctctacgtaaagcggccgcgaaacccgattttggaccgcttttcccgaacgcgcgatgcggtcgcgttctaacgcgctaggctgttttca 333  Q
    |||||| |||||| | | ||||||||||| ||||||| ||| ||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||    
T  10289674 cccgctcccgctccatgaaaagcggccgcaaaacccggtttaggaccgcttttgcctaacgcgcgttgcggtcgcgttctaacgcgctaggctgttttca 10289575  T
Q  334 gccgcgatcgcgccgcgttaggccgctattgacaaca 370  Q
     ||||   ||||||| ||||| |||||||||||||||    
T  10289574 accgc-tccgcgccgtgttagaccgctattgacaaca 10289539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 134 - 376
Target Start/End: Original strand, 43266157 - 43266398
Alignment:
Q  134 aaatagggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaatttcgtttcgacccggaaaagcgg-gcgatttg 232  Q
    |||||||||||||||||| ||||||||||||||||||| || ||||||||||||| |||||  ||||||||| ||||||||| ||| |||  ||| || |    
T  43266157 aaatagggctttgaaaattacaaaattaacccttctaatgtcacttaagtgaggggtaattctgtaatttcgcttcgacccgaaaacgcgccgcg-ttag 43266255  T
Q  233 acccgctaccgctctacgtaaagcggccgcgaaacccgattttggaccgcttttcccgaacgcgcgatgcggtcgcgttctaacgcgctaggctgttttc 332  Q
    |||| || |||||| ||| ||||||||||||||||||| ||||   |||||||| || ||||||||||||||||| ||||| ||||||||||||||||||    
T  43266256 acccactcccgctccacgaaaagcggccgcgaaacccggttttcagccgcttttgcctaacgcgcgatgcggtcgtgttctgacgcgctaggctgttttc 43266355  T
Q  333 agccgcgatcgcgccgcgttaggccgctattgacaacaaaggtt 376  Q
    ||||||   ||||||||||||||||||||||||||||| |||||    
T  43266356 agccgc-tccgcgccgcgttaggccgctattgacaacagaggtt 43266398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 6e-72; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 148 - 369
Target Start/End: Original strand, 35228096 - 35228317
Alignment:
Q  148 aaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaatttcgtttcgacccggaaaagcgggcgatttgacccgctaccgctct 247  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||     
T  35228096 aaatgacaaaattaacccttctaacgttacataagtgagggataattccgtaatttcgtttcgacccggaaaagcgggcgacttgaccagctaccgctcc 35228195  T
Q  248 acgtaaagcggccgcgaaacccgattttggaccgcttttcccgaacgcgcgatgcggtcgcgttctaacgcgctaggctgttttcagccgcgatcgcgcc 347  Q
    | |||||||||| |||||||||| |||||  |||||||| |  || ||||||  || ||||||||| |||||||||||||||||||||||||||||||||    
T  35228196 atgtaaagcggctgcgaaacccggttttgttccgcttttgcttaatgcgcgactcgatcgcgttctgacgcgctaggctgttttcagccgcgatcgcgcc 35228295  T
Q  348 gcgttaggccgctattgacaac 369  Q
    ||||| |  |||||||||||||    
T  35228296 gcgtttgatcgctattgacaac 35228317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 134 - 370
Target Start/End: Complemental strand, 33672346 - 33672110
Alignment:
Q  134 aaatagggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaatttcgtttcgacccggaaaagcgg-gcgatttg 232  Q
    |||||||||||||||||| ||||||||||||||||||| || ||||| ||||||| |||||  ||||||||| ||| ||||||||| |||  ||| || |    
T  33672346 aaatagggctttgaaaattacaaaattaacccttctaatgtcactta-gtgaggggtaattatgtaatttcgcttcaacccggaaacgcgccgcg-ttag 33672249  T
Q  233 acccgctaccgctcta-cgtaaagcggccgcgaaacccgattttggaccgcttttcccgaacgcgcgatgcggtcgcgttctaacgcgctaggctgtttt 331  Q
    |||| || |||||||| |  ||||||||||||||||||| ||||   |||||||| || ||||||||||||||||||||||| |||||||||||||||||    
T  33672248 acccactcccgctctaacaaaaagcggccgcgaaacccggttttcagccgcttttgcctaacgcgcgatgcggtcgcgttctgacgcgctaggctgtttt 33672149  T
Q  332 cagccgcgatcgcgccgcgttaggccgctattgacaaca 370  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  33672148 cagcagcgatcgcgccgcgttaggccgctactgacaaca 33672110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 256 - 338
Target Start/End: Original strand, 21286114 - 21286196
Alignment:
Q  256 cggccgcgaaacccgattttggaccgcttttcccgaacgcgcgatgcggtcgcgttctaacgcgctaggctgttttcagccgc 338  Q
    ||||||||||||||| ||| |  |||||||| || |||||||||  |||||||||| | ||||||||||||||||||||||||    
T  21286114 cggccgcgaaacccggtttcgttccgcttttgcctaacgcgcgactcggtcgcgttttgacgcgctaggctgttttcagccgc 21286196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 134 - 377
Target Start/End: Complemental strand, 1658861 - 1658619
Alignment:
Q  134 aaatagggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaatttcgtttcgacccggaaaagcgg-gcgatttg 232  Q
    |||||||||||||||||| ||||||||||||||||||| || ||||||||||||| |||||  ||||||||| ||||||||||||| |||  ||| || |    
T  1658861 aaatagggctttgaaaattacaaaattaacccttctaatgtcacttaagtgaggggtaattctgtaatttcgcttcgacccggaaacgcgccgcg-ttag 1658763  T
Q  233 acccgctaccgctctacgtaaagcggccgcgaaacccgattttggaccgcttttcccgaacgcgcgatgcggtcgcgttctaacgcgctaggctgttttc 332  Q
    ||||||| |||||| ||| ||||||||||||||||||| ||||   |||||||| || ||||||||||||||||||||||| ||||||||||||||||||    
T  1658762 acccgctcccgctccacgaaaagcggccgcgaaacccggttttcagccgcttttgcctaacgcgcgatgcggtcgcgttctgacgcgctaggctgttttc 1658663  T
Q  333 agccgcgatcgcgccgcgttaggccgctattgacaacaaaggttt 377  Q
    ||||||   ||||||||||||||||||||||||||||| ||||||    
T  1658662 agccgc-tccgcgccgcgttaggccgctattgacaacagaggttt 1658619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 252 - 370
Target Start/End: Complemental strand, 22710338 - 22710220
Alignment:
Q  252 aaagcggccgcgaaacccgattttggaccgcttttcccgaacgcgcgatgcggtcgcgttctaacgcgctaggctgttttcagccgcgatcgcgccgcgt 351  Q
    ||||||||||||||||||| |||| | ||||| || || |||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  22710338 aaagcggccgcgaaacccggttttcgcccgctattgcctaacgcgcgttgcggtcgcgttctgacgcgctaggctgttttcagccgcgatcgtgccgcgt 22710239  T
Q  352 taggccgctattgacaaca 370  Q
    || ||||||||||||||||    
T  22710238 taagccgctattgacaaca 22710220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 370
Target Start/End: Complemental strand, 38432187 - 38432075
Alignment:
Q  256 cggccgcgaaacccgattttggaccgcttttcccgaacgcgcgatgcggtcgcgttctaacgcgctaggctgttttcagccgcgatcgcgccgcgttagg 355  Q
    ||||||||||||||  |||||  ||||||||  | |||||||||  |||||||||||| ||||||||||||||||||||||||   |||||||||||||     
T  38432187 cggccgcgaaaccccgttttgttccgcttttgtctaacgcgcgactcggtcgcgttctgacgcgctaggctgttttcagccgc-tccgcgccgcgttagc 38432089  T
Q  356 ccgctattgacaaca 370  Q
    ||| |||||||||||    
T  38432088 ccg-tattgacaaca 38432075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 8148831 - 8148771
Alignment:
Q  215 ggaaaagcgggcgatttgacccgctaccgctctacgtaaagcggccgcgaaacccgatttt 275  Q
    ||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||| ||||    
T  8148831 ggaaaagtgggcgatttgacccgctaccgctccatgtaaagcggccgcgaaatccgctttt 8148771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 8153455 - 8153395
Alignment:
Q  215 ggaaaagcgggcgatttgacccgctaccgctctacgtaaagcggccgcgaaacccgatttt 275  Q
    ||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||| ||||    
T  8153455 ggaaaagtgggcgatttgacccgctaccgctccatgtaaagcggccgcgaaatccgctttt 8153395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 5e-66; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 134 - 376
Target Start/End: Original strand, 48663868 - 48664109
Alignment:
Q  134 aaatagggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaatttcgtttcgacccggaaaagcgg-gcgatttg 232  Q
    |||||||| ||||||||| ||||||||||||||||||| || ||||||||||||| |||||  ||||||||| ||||||||||||| |||  ||| || |    
T  48663868 aaatagggttttgaaaattacaaaattaacccttctaatgtcacttaagtgaggggtaattctgtaatttcgcttcgacccggaaacgcgccgcg-ttag 48663966  T
Q  233 acccgctaccgctctacgtaaagcggccgcgaaacccgattttggaccgcttttcccgaacgcgcgatgcggtcgcgttctaacgcgctaggctgttttc 332  Q
    ||||||| |||||| ||| ||||||||||||||||||| ||||   |||||||| || ||||||||||||||||||||||| ||||||||||||||||||    
T  48663967 acccgctcccgctccacgaaaagcggccgcgaaacccggttttcagccgcttttgcctaacgcgcgatgcggtcgcgttctgacgcgctaggctgttttc 48664066  T
Q  333 agccgcgatcgcgccgcgttaggccgctattgacaacaaaggtt 376  Q
    ||||||  |||||||||||||||||||||||||||||| |||||    
T  48664067 agccgc-ttcgcgccgcgttaggccgctattgacaacagaggtt 48664109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 134 - 370
Target Start/End: Complemental strand, 4100831 - 4100585
Alignment:
Q  134 aaatagggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaatttcgtttcgacccggaaaagcgg-gcgatttg 232  Q
    |||||||| ||||||||| |||||||||| |||||||| || ||||||||||||| |||||  ||||||||| ||||||||||||| |||  ||| || |    
T  4100831 aaatagggttttgaaaattacaaaattaaaccttctaatgtcacttaagtgaggggtaattctgtaatttcgcttcgacccggaaacgcgccgcg-ttag 4100733  T
Q  233 acccgctaccgctctacgtaaagcggccgcgaaacccgattttggaccgcttttcccgaacgcgcgatgcggtcgcgttctaacgcgctaggctgttttc 332  Q
    ||||||| |||||| ||| ||||||||||||||||||| ||||   | |||||| || ||||||||||||||||||||||| ||||||||||||||||||    
T  4100732 acccgctcccgctccacgaaaagcggccgcgaaacccggttttcagctgcttttgcctaacgcgcgatgcggtcgcgttctgacgcgctaggctgttttc 4100633  T
Q  333 ag----------ccgcgatcgcgccgcgttaggccgctattgacaaca 370  Q
    ||          ||||||||||||||||||||||||||||||||||||    
T  4100632 agccgctccgcgccgcgatcgcgccgcgttaggccgctattgacaaca 4100585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 213 - 375
Target Start/End: Original strand, 2994023 - 2994174
Alignment:
Q  213 ccggaaaagcgggcgatttgacccgctaccgctctacgtaaagcggccgcgaaacccgattttggaccgcttttcccgaacgcgcgatgcggtcgcgttc 312  Q
    |||||||||| |||||||||||||||||||  || | ||||||||||||||||||||            |||||||| ||| || ||  |||||||| ||    
T  2994023 ccggaaaagctggcgatttgacccgctaccaatccatgtaaagcggccgcgaaaccca-----------cttttccctaacacgtgactcggtcgcgctc 2994111  T
Q  313 taacgcgctaggctgttttcagccgcgatcgcgccgcgttaggccgctattgacaacaaaggt 375  Q
    | |||||||||||||||||| |||||||| |||||||||| ||||||||||||||||| ||||    
T  2994112 tgacgcgctaggctgttttcggccgcgattgcgccgcgtttggccgctattgacaacagaggt 2994174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 134 - 297
Target Start/End: Complemental strand, 28160639 - 28160476
Alignment:
Q  134 aaatagggctttgaaaatgacaaaattaacccttctaacgttacttaagtgagggataatttcgtaatttcgtttcgacccggaaaagcg-ggcgatttg 232  Q
    |||||||||||||||||| |||||||||||| |||||| || ||||||||||||| |||||  ||||||||| ||||||||||||| | |  |||  | |    
T  28160639 aaatagggctttgaaaattacaaaattaacctttctaatgtcacttaagtgaggggtaattctgtaatttcgcttcgacccggaaacgtgccgcg-ctag 28160541  T
Q  233 acccgctaccgctctacgtaaagcggccgcgaaacccgattttggaccgcttttcccgaacgcgc 297  Q
    ||||||| |||||| ||| ||||||||||| ||||||| ||||   |||||||| || |||||||    
T  28160540 acccgctcccgctccacgaaaagcggccgcaaaacccggttttcagccgcttttgcctaacgcgc 28160476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 209 - 331
Target Start/End: Original strand, 16900498 - 16900621
Alignment:
Q  209 cgacccggaaaagcgggcgatttgacccgctaccgctctacgtaaa-gcggccgcgaaacccgattttggaccgcttttcccgaacgcgcgatgcggtcg 307  Q
    ||||||||||||||||||||||||||||||| |||||| | ||||| | |||||| ||||||| | |||  || |||||||| ||| |||||  |||| |    
T  16900498 cgacccggaaaagcgggcgatttgacccgctcccgctccaagtaaaggtggccgcaaaacccgctattgacccacttttccctaacacgcgaatcggtag 16900597  T
Q  308 cgttctaacgcgctaggctgtttt 331  Q
    || ||| ||||| |||||||||||    
T  16900598 cgctctgacgcggtaggctgtttt 16900621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 370
Target Start/End: Complemental strand, 28160473 - 28160439
Alignment:
Q  336 cgcgatcgcgccgcgttaggccgctattgacaaca 370  Q
    ||||| |||||||||||||||||||||||||||||    
T  28160473 cgcgaccgcgccgcgttaggccgctattgacaaca 28160439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 331
Target Start/End: Original strand, 11057097 - 11057220
Alignment:
Q  209 cgacccggaaaagcgggcgatttgacccgctaccgctctacgtaaagc-ggccgcgaaacccgattttggaccgcttttcccgaacgcgcgatgcggtcg 307  Q
    ||||||||||||||||||||||||||||||| |||||| | ||||| | |||||||||||||| | |||  ||||||||||| |||||||||  |||| |    
T  11057097 cgacccggaaaagcgggcgatttgacccgctcccgctccaggtaaacccggccgcgaaacccgctattgacccgcttttccctaacgcgcgaatcggtag 11057196  T
Q  308 cgttctaacgcgctaggctgtttt 331  Q
    ||  || | ||| |||||||||||    
T  11057197 cgccctgatgcggtaggctgtttt 11057220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 376
Target Start/End: Complemental strand, 7199099 - 7199057
Alignment:
Q  334 gccgcgatcgcgccgcgttaggccgctattgacaacaaaggtt 376  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||    
T  7199099 gccgcgatcgcgccgagttcggccgctattgacaacagaggtt 7199057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 370
Target Start/End: Original strand, 51470337 - 51470373
Alignment:
Q  334 gccgcgatcgcgccgcgttaggccgctattgacaaca 370  Q
    |||||||||||||| |||| |||||||||||||||||    
T  51470337 gccgcgatcgcgcctcgttcggccgctattgacaaca 51470373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 209 - 299
Target Start/End: Complemental strand, 5319625 - 5319534
Alignment:
Q  209 cgacccggaaaagcgggcgatttgacccgctaccgctctacgtaaa-gcggccgcgaaacccgattttggaccgcttttcccgaacgcgcga 299  Q
    |||||||||||||| |||||||||||||||| |||||| | ||||| |||||||||||||||| | | |  ||||||||||| |||||||||    
T  5319625 cgacccggaaaagctggcgatttgacccgctcccgctccaggtaaaggcggccgcgaaacccgctatggacccgcttttccctaacgcgcga 5319534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 370
Target Start/End: Complemental strand, 18584 - 18548
Alignment:
Q  334 gccgcgatcgcgccgcgttaggccgctattgacaaca 370  Q
    ||||||||||||||||||| |||||||||||||||||    
T  18584 gccgcgatcgcgccgcgttcggccgctattgacaaca 18548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University