View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20175_high_11 (Length: 442)
Name: NF20175_high_11
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20175_high_11 |
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| [»] scaffold0128 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 7306762 - 7307007
Alignment:
| Q |
18 |
acccattgcatgaaccaataacttcacgacaatccttgtcatgcaatagataataaggatccttaggaaaggtgatatatatgacggttat--aacaaac |
115 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
7306762 |
acccattgcatgaaccaataacttcactacaatccttgtcatgcaatagataataaggatccttaggaaaggtgatat----gacggttatctaacaaac |
7306857 |
T |
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| Q |
116 |
gaccagctggaaaaggtacgaaacggtgcgggtaatagaatagcaaaaagtgggggtttcgtgcagatctattgaggtgcattttgatgaatttaggatc |
215 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7306858 |
gaccagatggaaaaggtacgaaacggtgcgggtaatagaatagcgaaaagtgcgggtttcgtgcagatctattgaggtgcattttgatgaatttaggatc |
7306957 |
T |
|
| Q |
216 |
ggaaataatagtgttccaagacttacacacacacttgatctgcatcaaag |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7306958 |
ggaaataatagtgttccaagacttacacacacacttgatctgcatcaaag |
7307007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 169 - 427
Target Start/End: Complemental strand, 7327471 - 7327213
Alignment:
| Q |
169 |
gggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatcaaagatc |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7327471 |
gggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcagaaataatagtgttccaagacttacacacacacttgatctgcatcaaagatc |
7327372 |
T |
|
| Q |
269 |
ttactggaagccttgataagattttggccataacctcgtcggggagatctactgatggcggcagattggagtgagagcgaagacgctgcaagttcggtgg |
368 |
Q |
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| T |
7327371 |
ttactggaagccttgataagatttcggccataacctcgtcggggagtgtttctgacggcggcagattggattgagagcggagacgccgcaagttcggcag |
7327272 |
T |
|
| Q |
369 |
ctgtgtattcatcggagcaggctgtgtcggagcagttgaaagttgacgatgctcgctat |
427 |
Q |
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||| ||||||||| |||| || |||| || |||| ||||||||||||| |||| |||| |
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| T |
7327271 |
ctgcgtattcatcagagcgagcggtgtgggtgcagatgaaagttgacgacgctccctat |
7327213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 163 - 386
Target Start/End: Original strand, 7312036 - 7312259
Alignment:
| Q |
163 |
aagtgggggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatca |
262 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7312036 |
aagtgcgggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcagagataatagtgttccaagacttactcacacacttgatctgcatca |
7312135 |
T |
|
| Q |
263 |
aagatcttactggaagccttgataagattttggccataacctcgtcggggagatctactgatggcggcagattggagtgagagcgaagacgctgcaagtt |
362 |
Q |
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||| |||||||||||||| ||||||||||| ||| || ||||| ||| |||| ||||||||||||||||||||| |||||||| |||||| || |||| |
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| T |
7312136 |
aagttcttactggaagccatgataagatttcggcgatgacctcatcgaggagggttactgatggcggcagattggattgagagcggagacgccgcgagtt |
7312235 |
T |
|
| Q |
363 |
cggtggctgtgtattcatcggagc |
386 |
Q |
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||| |||||||||||||| |||| |
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| T |
7312236 |
cggcagctgtgtattcatcagagc |
7312259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 7327642 - 7327521
Alignment:
| Q |
20 |
ccattgcatgaaccaataacttcacgacaatccttgtcatgcaatagataataaggatccttaggaaaggtgatatatatgacggttat--aacaaacga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| || |||| | |
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| T |
7327642 |
ccattgcatgaaccaataacttcacgacaatccttgtcatgcaatagataataaggatccttaggaaaggtgatat----gagggttatctaataaacta |
7327547 |
T |
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| Q |
118 |
ccagctggaaaaggtacgaaacggtg |
143 |
Q |
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||||| |||||||||||||||||||| |
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| T |
7327546 |
ccagcaggaaaaggtacgaaacggtg |
7327521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 7311871 - 7311992
Alignment:
| Q |
20 |
ccattgcatgaaccaataacttcacgacaatccttgtcatgcaatagataataaggatccttaggaaaggtgatatatatgacggtta--taacaaacga |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||| ||| || |
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| T |
7311871 |
ccattgcaggaaccaataacttcacgacaatccttgtcatgcaacagataataaggatccttaggaaaggtg----atatgacggttatctaataaatga |
7311966 |
T |
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| Q |
118 |
ccagctggaaaaggtacgaaacggtg |
143 |
Q |
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||||| |||||||||| ||||||||| |
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| T |
7311967 |
ccagcaggaaaaggtatgaaacggtg |
7311992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 20455776 - 20455701
Alignment:
| Q |
181 |
gatctattgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatct |
256 |
Q |
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|||||||| ||||| ||||||| |||||||| |||||| |||| || |||||||||||||| |||||||| |||| |
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| T |
20455776 |
gatctattaaggtgtattttgacgaatttagaatcggagataagggttttccaagacttacatacacacttcatct |
20455701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 20414147 - 20414072
Alignment:
| Q |
181 |
gatctattgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatct |
256 |
Q |
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|||||||| ||||| ||||||| ||||||| |||||| |||| || |||||||||||||| |||||||| |||| |
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| T |
20414147 |
gatctattaaggtgtattttgacaaatttagaatcggagataagggttttccaagacttacatacacacttcatct |
20414072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 22533935 - 22533863
Alignment:
| Q |
169 |
gggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttac |
241 |
Q |
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||||||| |||||| | ||| |||||||||||| |||||||||||| || ||||| || ||||| ||||||| |
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| T |
22533935 |
gggtttcttgcagaccgattaaggtgcattttggcgaatttaggatcagagataatggttttccaggacttac |
22533863 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 190 - 292
Target Start/End: Complemental strand, 3417 - 3315
Alignment:
| Q |
190 |
aggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatcaaagatcttactggaagccttgataaga |
289 |
Q |
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||||||||||||| ||||||||||||||| || | ||||||||||| | || ||| |||| ||||||||||| ||| | |||||||||| ||||| || |
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| T |
3417 |
aggtgcattttgacgaatttaggatcggagatgagagtgttccaagtatgacttacagacttcatctgcatcaatgatttgactggaagccatgatagga |
3318 |
T |
|
| Q |
290 |
ttt |
292 |
Q |
| |
|
||| |
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|
| T |
3317 |
ttt |
3315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 280
Target Start/End: Complemental strand, 24925 - 24814
Alignment:
| Q |
169 |
gggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatcaaagatc |
268 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| |||||| ||||| || || | ||| ||||| ||||||| || ||||| |||||||| | |||| |
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| T |
24925 |
gggtttcgtgcagatctactaaggtgcattttaatgaatgaaggattagagatgagagttttccatgacttactgacgcacttcatctgcataagagatt |
24826 |
T |
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| Q |
269 |
ttactggaagcc |
280 |
Q |
| |
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|||| ||||||| |
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| T |
24825 |
ttaccggaagcc |
24814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 42297388 - 42297270
Alignment:
| Q |
196 |
attttgatgaatttaggatcggaaataatagtgttccaagacttacacacacacttgatctgcatcaaagatcttactggaagccttgataagattttgg |
295 |
Q |
| |
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||||||| ||||||||||| ||| || | |||||||||||| ||| ||||| || |||||||||| |||| | |||||||||| |||||| |||| || |
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| T |
42297388 |
attttgacgaatttaggattggagattagagtgttccaagaaatacttacacatttcatctgcatcagagatttcactggaagccatgataatatttcgg |
42297289 |
T |
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| Q |
296 |
ccataacctcgtcggggag |
314 |
Q |
| |
|
|||| |||||||||||| |
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| T |
42297288 |
tgataagctcgtcggggag |
42297270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 249
Target Start/End: Complemental strand, 2576156 - 2576076
Alignment:
| Q |
169 |
gggtttcgtgcagatctattgaggtgcattttgatgaatttaggatcggaaataatagtgttccaagacttacacacacac |
249 |
Q |
| |
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||||||||||| |||| || ||||| | ||| |||||||||||||| |||||||||| |||||||| || || |||||| |
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| T |
2576156 |
gggtttcgtgccgatcgcttaaggtgaagtttaatgaatttaggatcagaaataatagatttccaagatttgcatacacac |
2576076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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