View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20175_high_12 (Length: 441)

Name: NF20175_high_12
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20175_high_12
NF20175_high_12
[»] chr2 (20 HSPs)
chr2 (24-422)||(12904559-12904957)
chr2 (219-370)||(11992594-11992745)
chr2 (191-281)||(7292720-7292810)
chr2 (219-357)||(4807248-4807386)
chr2 (219-357)||(452110-452248)
chr2 (219-357)||(45368112-45368249)
chr2 (217-357)||(2610184-2610324)
chr2 (192-357)||(13148969-13149134)
chr2 (287-357)||(24584162-24584232)
chr2 (32-120)||(23714561-23714649)
chr2 (32-120)||(24102233-24102321)
chr2 (206-357)||(33594744-33594895)
chr2 (296-357)||(30743279-30743340)
chr2 (317-357)||(14769946-14769986)
chr2 (219-346)||(3244139-3244266)
chr2 (242-357)||(41763560-41763675)
chr2 (317-357)||(876788-876828)
chr2 (317-357)||(8180436-8180476)
chr2 (192-248)||(9460393-9460449)
chr2 (317-357)||(38453206-38453246)
[»] chr4 (17 HSPs)
chr4 (205-397)||(10775896-10776085)
chr4 (206-357)||(30807254-30807402)
chr4 (241-357)||(50286627-50286743)
chr4 (219-357)||(23906789-23906927)
chr4 (219-357)||(33226865-33227003)
chr4 (219-357)||(48174581-48174719)
chr4 (202-353)||(42037521-42037677)
chr4 (219-357)||(27450661-27450799)
chr4 (206-372)||(39754846-39755012)
chr4 (219-357)||(56374946-56375084)
chr4 (212-357)||(1211871-1212016)
chr4 (203-258)||(15183614-15183669)
chr4 (219-357)||(435885-436023)
chr4 (219-353)||(53707454-53707588)
chr4 (241-357)||(31960324-31960440)
chr4 (219-357)||(48623015-48623153)
chr4 (43-88)||(30853339-30853384)
[»] chr8 (17 HSPs)
chr8 (203-420)||(25985134-25985350)
chr8 (219-357)||(36565729-36565867)
chr8 (317-370)||(18849701-18849754)
chr8 (219-356)||(42854492-42854629)
chr8 (219-357)||(4032982-4033120)
chr8 (219-357)||(12492330-12492468)
chr8 (317-413)||(41444890-41444987)
chr8 (298-357)||(15215837-15215896)
chr8 (219-357)||(36544808-36544946)
chr8 (234-278)||(30748232-30748276)
chr8 (317-357)||(43732230-43732270)
chr8 (317-357)||(45332073-45332113)
chr8 (317-351)||(8880020-8880054)
chr8 (203-281)||(42493774-42493852)
chr8 (203-240)||(16351162-16351199)
chr8 (212-281)||(38328288-38328357)
chr8 (24-93)||(39051060-39051129)
[»] chr1 (21 HSPs)
chr1 (206-397)||(28528197-28528388)
chr1 (232-384)||(6640755-6640907)
chr1 (219-357)||(51601714-51601852)
chr1 (224-357)||(7921583-7921716)
chr1 (241-357)||(27445554-27445670)
chr1 (205-357)||(51234271-51234422)
chr1 (241-357)||(1210401-1210517)
chr1 (219-357)||(43240869-43241007)
chr1 (317-413)||(40419280-40419377)
chr1 (203-355)||(34827574-34827726)
chr1 (203-246)||(18793460-18793503)
chr1 (219-357)||(49347881-49348020)
chr1 (203-247)||(26016231-26016275)
chr1 (221-357)||(32083235-32083371)
chr1 (317-371)||(3877491-3877545)
chr1 (219-357)||(8671576-8671714)
chr1 (219-357)||(51441252-51441390)
chr1 (241-357)||(19936177-19936294)
chr1 (244-357)||(37463378-37463491)
chr1 (296-370)||(32066836-32066907)
chr1 (48-124)||(52442823-52442899)
[»] chr7 (21 HSPs)
chr7 (203-399)||(43793515-43793708)
chr7 (219-357)||(38606661-38606799)
chr7 (219-357)||(46356339-46356477)
chr7 (219-357)||(33350294-33350432)
chr7 (219-353)||(11593620-11593754)
chr7 (219-357)||(36651650-36651788)
chr7 (219-357)||(31004880-31005017)
chr7 (287-357)||(32630263-32630333)
chr7 (219-356)||(37616573-37616710)
chr7 (203-357)||(18637236-18637387)
chr7 (203-357)||(18650671-18650822)
chr7 (55-120)||(36514531-36514596)
chr7 (191-279)||(12965677-12965764)
chr7 (317-357)||(18608276-18608316)
chr7 (317-357)||(18626562-18626602)
chr7 (317-397)||(20499711-20499791)
chr7 (317-357)||(39906965-39907005)
chr7 (245-357)||(49028923-49029035)
chr7 (270-357)||(24177734-24177821)
chr7 (220-346)||(24550178-24550304)
chr7 (219-355)||(48919046-48919182)
[»] chr3 (22 HSPs)
chr3 (219-357)||(25191035-25191173)
chr3 (219-357)||(38849750-38849888)
chr3 (241-397)||(44395046-44395199)
chr3 (212-357)||(27917228-27917373)
chr3 (317-397)||(1448199-1448279)
chr3 (195-391)||(46145775-46145971)
chr3 (191-338)||(11581119-11581266)
chr3 (219-357)||(28245093-28245231)
chr3 (219-357)||(47542199-47542337)
chr3 (219-357)||(51448197-51448335)
chr3 (191-275)||(50632288-50632372)
chr3 (294-357)||(19757724-19757787)
chr3 (192-278)||(50632442-50632528)
chr3 (50-119)||(49841503-49841572)
chr3 (237-357)||(29817161-29817280)
chr3 (217-273)||(30345267-30345323)
chr3 (317-357)||(52138484-52138524)
chr3 (203-281)||(805634-805712)
chr3 (317-351)||(9258541-9258575)
chr3 (227-276)||(24302013-24302062)
chr3 (196-252)||(1448078-1448134)
chr3 (317-357)||(19736822-19736862)
[»] chr5 (20 HSPs)
chr5 (219-420)||(3394303-3394504)
chr5 (219-367)||(12492875-12493023)
chr5 (203-354)||(21915545-21915696)
chr5 (219-357)||(3301505-3301643)
chr5 (219-357)||(16347891-16348028)
chr5 (219-357)||(1288077-1288215)
chr5 (219-357)||(2075962-2076100)
chr5 (219-357)||(20318647-20318785)
chr5 (241-357)||(1274921-1275037)
chr5 (219-357)||(10638953-10639091)
chr5 (203-276)||(15370739-15370812)
chr5 (317-398)||(43558400-43558481)
chr5 (297-397)||(6368491-6368591)
chr5 (219-370)||(28977345-28977496)
chr5 (219-357)||(24178180-24178318)
chr5 (55-120)||(16134505-16134570)
chr5 (203-357)||(38578976-38579127)
chr5 (40-119)||(27998315-27998394)
chr5 (287-414)||(17341757-17341885)
chr5 (297-357)||(27302513-27302573)
[»] chr6 (11 HSPs)
chr6 (219-357)||(9706432-9706570)
chr6 (219-354)||(5631476-5631612)
chr6 (219-357)||(5258638-5258776)
chr6 (213-311)||(7079836-7079934)
chr6 (219-357)||(20428124-20428262)
chr6 (296-357)||(10100422-10100483)
chr6 (297-356)||(2689313-2689372)
chr6 (235-309)||(6641914-6641988)
chr6 (295-385)||(8811940-8812030)
chr6 (212-300)||(19338459-19338547)
chr6 (55-115)||(20834380-20834440)
[»] scaffold0606 (1 HSPs)
scaffold0606 (317-397)||(9273-9353)
[»] scaffold0024 (1 HSPs)
scaffold0024 (245-357)||(82377-82489)
[»] scaffold0570 (1 HSPs)
scaffold0570 (219-357)||(2758-2896)
[»] scaffold0113 (1 HSPs)
scaffold0113 (287-357)||(12154-12224)
[»] scaffold0171 (1 HSPs)
scaffold0171 (317-357)||(5848-5888)
[»] scaffold0896 (1 HSPs)
scaffold0896 (295-385)||(4386-4476)
[»] scaffold0018 (1 HSPs)
scaffold0018 (219-357)||(31124-31262)


Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 24 - 422
Target Start/End: Complemental strand, 12904957 - 12904559
Alignment:
Q  24 aatattgacatttttcattctatattgtctcgtcttaccatacatccaacacaatatcatcatctatgttatacttaatctattttcgtgttggttcatt 123  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | || |||| |||||||||||||||||||||||||||||||    
T  12904957 aatattgacatttttaattctatattgtctcgtcttaccatacatccaacacaatatccttatttatgctatacttaatctattttcgtgttggttcatt 12904858  T
Q  124 atctcccaatactctgtctctcgtacaacattgttggtcttacctctgtccgatnnnnnnnttcttccaacttgagtaatactttcgcatcatataaaac 223  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  12904857 atctcccaacactctgtccctcgtacaacattgttggtcttacctctgtccgataaaaaaattcttccaacttgagtaatactttcgcatcatataaaac 12904758  T
Q  224 acctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatattta 323  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12904757 acctgagacactcgtttatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatattta 12904658  T
Q  324 aaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaaattaaattctatatactccgtcttat 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12904657 aaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaaattacattctatatactccgtcttat 12904559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 219 - 370
Target Start/End: Original strand, 11992594 - 11992745
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | ||||||| | ||| ||||||||| || | | |||||||| |||||||||||||||| | | ||    
T  11992594 aaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatgatttacatctgcttctatttctccatcattttgtactatagacccaagat 11992693  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaa 370  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  ||||||||    
T  11992694 atttaaaccgtgtaacttggggtatgatatgatctccaactttcacctctaa 11992745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 191 - 281
Target Start/End: Complemental strand, 7292810 - 7292720
Alignment:
Q  191 caacttgagtaatactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcct 281  Q
    ||||||||| | |||||||||||||||||||||||||||| |||||||  |||||||||||| |||||| |||  ||||||||||||||||    
T  7292810 caacttgagcagtactttcgcatcatataaaacacctgagtcactccttcatttcaaccacccaacttggatttgatggtttacatctcct 7292720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 4807386 - 4807248
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||||| || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| | |||| | | ||    
T  4807386 aaaacacctgagactcttctccatttcaaccacccatcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaagacccaagat 4807287  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||| |||||||||| | |||||||||||||||||    
T  4807286 atttaaactgtgtaacttggggtatgatatgatctccaa 4807248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 452110 - 452248
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  452110 aaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 452209  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  452210 atttaaaccgtgtaacttggggtatgatatgatctccaa 452248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 45368112 - 45368249
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||||| || ||| |||||||||||| | ||||||| | ||  ||||||||| || | | |||||||| |||||||| ||| ||| | | ||    
T  45368112 aaaacacctgagactcttctccatttcaaccacccagcttgaatacgataatttacatctgcttctatttctccatcattttgtattatggacccaagat 45368211  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||| ||| | |||||||||||||||||    
T  45368212 atttaaaccgtgtaatttg-ggtatgatatgatctccaa 45368249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 357
Target Start/End: Complemental strand, 2610324 - 2610184
Alignment:
Q  217 ataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccat 316  Q
    |||||||||||||| | || ||| |||||||||||| | |||||||   ||||||||||||| || | | |||||  | ||||||||| |  ||| | |     
T  2610324 ataaaacacctgaggctcttctccatttcaaccacccagcttgaatatgatggtttacatctgcttctatttctctgtcattttgtacgaaggacccaag 2610225  T
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  2610224 atatttaaaccgtgtaacttggggtatgatatgatctccaa 2610184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 357
Target Start/End: Complemental strand, 13149134 - 13148969
Alignment:
Q  192 aacttgagtaatactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctc 291  Q
    |||||||||  |||||||  ||||||| ||||||||||  | || ||  |||||||||| | ||||||||| | ||| |||  |||| || | | |||||    
T  13149134 aacttgagtggtactttcttatcatatgaaacacctgaagctcttcttcatttcaaccatccaacttgaatacgatgatttgtatctacttctatttctc 13149035  T
Q  292 cattattttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    | | |||||||||||| |||   | ||||||||||||||||||||| | |||||||||||||||||    
T  13149034 cgtcattttgtactatggacctgagatatttaaaccgtgtaacttggggtatgatatgatctccaa 13148969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 287 - 357
Target Start/End: Original strand, 24584162 - 24584232
Alignment:
Q  287 ttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||| |||||||||||| ||| | | ||||||||||||||||||||| | | |||||||||||||||    
T  24584162 ttctccatcattttgtactatggacccaagatatttaaaccgtgtaacttgcggtctgatatgatctccaa 24584232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 23714561 - 23714649
Alignment:
Q  32 catttttcattctatattgtctcgtcttaccatacatccaacacaatatcatcatctatgttatacttaatctattttcgtgttggttc 120  Q
    ||||||| || |||| |||||| ||||||||| ||||||||||||| ||  | |||| || ||| |||||| |||||||||||||||||    
T  23714561 catttttaatcctattttgtctagtcttaccacacatccaacacaacattctaatctctgctatgcttaatttattttcgtgttggttc 23714649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 24102233 - 24102321
Alignment:
Q  32 catttttcattctatattgtctcgtcttaccatacatccaacacaatatcatcatctatgttatacttaatctattttcgtgttggttc 120  Q
    ||||||| || |||| |||||| ||||||||| ||||||||||||| ||  | |||| || ||| |||||| |||||||||||||||||    
T  24102233 catttttaatcctattttgtctagtcttaccacacatccaacacaacattctaatctctgctatgcttaatttattttcgtgttggttc 24102321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 357
Target Start/End: Original strand, 33594744 - 33594895
Alignment:
Q  206 tttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtact 305  Q
    ||||||||||  |||||||||| ||||||||||| || ||||||||| |  |||||||  ||| |||||||||||| | | ||||||    |||||||||    
T  33594744 tttcgcatcacttaaaacacctaagacactcctccatctcaaccacccagtttgaatttgatgttttacatctccttctatttctccgacgttttgtact 33594843  T
Q  306 atagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||| ||   | |||||||||| |||||| |  || |||||||||| ||||||    
T  33594844 atatacctaagatatttaaactgtgtaaatgctggtatgatatgaactccaa 33594895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 357
Target Start/End: Complemental strand, 30743340 - 30743279
Alignment:
Q  296 attttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||||| |||   | ||||||||||||||||||||| |||||| ||||||||||||    
T  30743340 attttgtactattgacctaagatatttaaaccgtgtaacttgggatatggtatgatctccaa 30743279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 14769986 - 14769946
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||||||||||||| || |||||||||||||||||    
T  14769986 atatttaaaccgtgtaacttatgctatgatatgatctccaa 14769946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 346
Target Start/End: Original strand, 3244139 - 3244266
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | |  ||| ||||| |||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  3244139 aaaacacctgaggctcatctccatttctaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 3244238  T
Q  319 atttaaaccgtgtaacttgtgatatgat 346  Q
    ||||||||||||||||||| ||||||||    
T  3244239 atttaaaccgtgtaacttgggatatgat 3244266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 357
Target Start/End: Original strand, 41763560 - 41763675
Alignment:
Q  242 tttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtgat 341  Q
    ||||||||||| | ||||||| | ||| ||||||||| || | | ||||||   |||||||||||| ||| | | ||||||||| |||| |||||| | |    
T  41763560 tttcaaccacccagcttgaatacgatgatttacatctgcttctatttctccgacattttgtactatggacccaagatatttaaatcgtgcaacttggggt 41763659  T
Q  342 atgatatgatctccaa 357  Q
    ||||||| ||||||||    
T  41763660 atgatataatctccaa 41763675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 876828 - 876788
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||| |||||||||||| || ||||||||||||||    
T  876828 atatttaaactgtgtaacttgtggtaggatatgatctccaa 876788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 8180476 - 8180436
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||||||||||||||   |||||||||||||||||    
T  8180476 atatttaaaccgtgtaacttggagtatgatatgatctccaa 8180436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 9460449 - 9460393
Alignment:
Q  192 aacttgagtaatactttcgcatcatataaaacacctgagacactcctctatttcaac 248  Q
    ||||||||| ||||||| | ||||||||||| || |||||| |||||| ||||||||    
T  9460449 aacttgagtgatacttttgtatcatataaaaaacatgagaccctcctccatttcaac 9460393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 38453206 - 38453246
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||| ||||||||||| | |||||||||||||||||    
T  38453206 atatttaaatcgtgtaacttggggtatgatatgatctccaa 38453246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 205 - 397
Target Start/End: Original strand, 10775896 - 10776085
Alignment:
Q  205 ctttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtac 304  Q
    ||||||||||| ||||||||  | || |||||||| |||||||||||| |  ||||||||||||||||||||||     ||||||||||| ||||||||     
T  10775896 ctttcgcatcacataaaacaagtaaggcactcctccatttcaaccacccattttgaattctatggtttacatctta---aacttctccatcattttgtat 10775992  T
Q  305 tatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaaa 397  Q
    ||||||| | | ||||||||||| ||||||||||| ||||||||||||||||| ||   |||||||||||||||| |||||||||||||||||    
T  10775993 tatagacccaagatatttaaaccatgtaacttgtggtatgatatgatctccaactttcccctctaaactagaaacatttcgccttttgctaaa 10776085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 206 - 357
Target Start/End: Complemental strand, 30807402 - 30807254
Alignment:
Q  206 tttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtact 305  Q
    |||| ||||| ||||||||||| ||||||||||| ||||||| || | |||||  ||| |||||||||||||| ||   | |||||  | ||||||||||    
T  30807402 tttcacatcacataaaacacctaagacactcctccatttcaaacaaccaactttgattttatggtttacatcttct---atttctcagtcattttgtact 30807306  T
Q  306 atagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||| ||| | ||||||||||||||||||||| |||||||||||||||||    
T  30807305 atagactccaaacatttaaaccgtgtaacttgtggtatgatatgatctccaa 30807254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 241 - 357
Target Start/End: Complemental strand, 50286743 - 50286627
Alignment:
Q  241 atttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtga 340  Q
    |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||||| ||||||||||||||||||||||| |     
T  50286743 atttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacacaatatatttaaaccgtgtaacttgggg 50286644  T
Q  341 tatgatatgatctccaa 357  Q
    |||||||||||||||||    
T  50286643 tatgatatgatctccaa 50286627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 23906789 - 23906927
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  23906789 aaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 23906888  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  23906889 atttaaaccgtgtaacttggggtatgatatgatctccaa 23906927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 33227003 - 33226865
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||||| || ||| |||||||||||| | |||||||   |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  33227003 aaaacacctgagactcttctccatttcaaccacccagcttgaatatgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 33226904  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  33226903 atttaaaccgtgtaacttggggtatgatatgatctccaa 33226865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 48174581 - 48174719
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||||| ||||||| | |||| |||||||| || | | |||||| | | ||||||| |  ||| | | ||    
T  48174581 aaaacacctgaggctcttctccatttcaaccacctagcttgaatacgatggcttacatctgcttctatttctccgtcactttgtacgaaggacccaagat 48174680  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  48174681 atttaaaccgtgtaacttggggtatgatatgatctccaa 48174719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 202 - 353
Target Start/End: Complemental strand, 42037677 - 42037521
Alignment:
Q  202 atactttcgcatcatataaaacacctgagacactcctcta-tttcaaccacctaact----tgaattctatggtttacatctcctccaacttctccatta 296  Q
    |||||||| ||||| |||||||||||||| |||||||| | ||||||||| ||| ||    || ||||  |||||||||||||||   | |||||  | |    
T  42037677 atactttcacatcacataaaacacctgaggcactcctccaatttcaaccatctagctagcttggattcagtggtttacatctccttatatttctcagtca 42037578  T
Q  297 ttttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatct 353  Q
    ||||||||||||||  | | |||||||||||||||||||||||  ||||||||||||    
T  42037577 ttttgtactatagattcaagatatttaaaccgtgtaacttgtgggatgatatgatct 42037521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 27450661 - 27450799
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    ||||||| |||| | || ||| |||||||||||| | ||||||| | ||| ||||||||| || | | |||||||| |||||| ||||| ||| | | ||    
T  27450661 aaaacacttgaggctcttctccatttcaaccacccagcttgaatacgatgatttacatctgcttctatttctccatcattttgcactatggacccaagat 27450760  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    || ||||| |||||||||| | |||||||||||||||||    
T  27450761 atgtaaactgtgtaacttggggtatgatatgatctccaa 27450799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 372
Target Start/End: Original strand, 39754846 - 39755012
Alignment:
Q  206 tttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtact 305  Q
    |||||||||| ||||||||| |||| ||||  |  |||||||||||  |||||| |||| ||| |||||||||||| | | ||||   |  |||||||||    
T  39754846 tttcgcatcacataaaacacttgaggcactggttcatttcaaccactaaacttggattcaatgatttacatctccttctatttctttgtcgttttgtact 39754945  T
Q  306 atagacaccat-atatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaac 372  Q
    |||||| |||| |||||||||  |||| ||||||| ||||||||||||| ||| ||  ||||||||||    
T  39754946 atagac-ccatgatatttaaagtgtgtgacttgtggtatgatatgatcttcaactttcacctctaaac 39755012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 56375084 - 56374946
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | ||||||| | |||| ||| |||| || | | |||||| | ||||||||| |  ||| | | ||    
T  56375084 aaaacacctgaggctcttctcaatttcaaccacccagcttgaatacgatggcttatatctgcttctatttctccgtcattttgtacgaaggacccaagat 56374985  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | ||||||||| |||||||    
T  56374984 atttaaaccgtgtaacttggggtatgatatgctctccaa 56374946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 357
Target Start/End: Original strand, 1211871 - 1212016
Alignment:
Q  212 atcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagac 311  Q
    |||||| ||||||  |||| | || ||| |||||||| ||||||||||||| | ||| |||||| || || | | |||||  |||||||||||||| |||    
T  1211871 atcatacaaaacatttgaggctcttctccatttcaactacctaacttgaatacgatgatttacacctgcttctatttctctgttattttgtactatggac 1211970  T
Q  312 accatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    || | ||||||||||  |||||| |  | |||||||||||||||||    
T  1211971 acaagatatttaaactatgtaacgtaaggtatgatatgatctccaa 1212016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 15183669 - 15183614
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaactt 258  Q
    ||||||||||||| ||||||||| ||||||||||||| || ||||||||| |||||    
T  15183669 tactttcgcatcacataaaacacttgagacactcctccatctcaaccacccaactt 15183614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 436023 - 435885
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||  | ||||||| | |||  |||||||| || | | |||||| | ||||| ||| |  ||| | | ||    
T  436023 aaaacacctgaggctcttctccatttcaaccactcagcttgaatacgatgacttacatctgcttctatttctccgtcattttatacgaaggacccaagat 435924  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  435923 atttaaaccgtgtaacttggggtatgatatgatctccaa 435885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 353
Target Start/End: Complemental strand, 53707588 - 53707454
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||| ||||| | || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  53707588 aaaacatctgagtctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 53707489  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatct 353  Q
    ||||| ||||||||||||| | |||||||||||||    
T  53707488 atttagaccgtgtaacttggggtatgatatgatct 53707454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 357
Target Start/End: Original strand, 31960324 - 31960440
Alignment:
Q  241 atttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtga 340  Q
    |||||||||||| | |||||||   |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||||||||||||||||| ||| |     
T  31960324 atttcaaccacccagcttgaatatgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgtaaattgggg 31960423  T
Q  341 tatgatatgatctccaa 357  Q
    |||||||||||||||||    
T  31960424 tatgatatgatctccaa 31960440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 48623015 - 48623153
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| |  | ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  48623015 aaaacacctgaggcttttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 48623114  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||| ||||||| ||| | ||||||||| |||||||    
T  48623115 atttaaatcgtgtaatttggggtatgatatgctctccaa 48623153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 30853384 - 30853339
Alignment:
Q  43 ctatattgtctcgtcttaccatacatccaacacaatatcatcatct 88  Q
    |||| |||||| ||||||||||||||||||||||| ||| ||||||    
T  30853384 ctatcttgtctagtcttaccatacatccaacacaacatcttcatct 30853339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 9e-40; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 203 - 420
Target Start/End: Complemental strand, 25985350 - 25985134
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgt 302  Q
    ||||| ||||||||||||||||| |||| |||||||| |||||||| ||| |  ||| |||| |||||||||||||||| | | ||||||||  ||||||    
T  25985350 tacttccgcatcatataaaacacttgaggcactcctccatttcaactacccattttggattcaatggtttacatctccttctatttctccatatttttgt 25985251  T
Q  303 actatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaaa-ttaa 401  Q
    ||||||||  | ||||||||||||||||||||||||| ||||||||||  ||||| ||  |||||||| ||||||| | ||||||| |||||||| |||     
T  25985250 actatagatccaatatatttaaaccgtgtaacttgtggtatgatatga--tccaactttcacctctaagctagaaatgcttcgcctcttgctaaacttac 25985153  T
Q  402 attctatatactccgtctt 420  Q
    |||| |||||||| |||||    
T  25985152 attccatatactctgtctt 25985134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 36565729 - 36565867
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  36565729 aaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacaaaggacccaagat 36565828  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  36565829 atttaaaccgtgtaacttggggtatgatatgatctccaa 36565867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 370
Target Start/End: Original strand, 18849701 - 18849754
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaa 370  Q
    ||||||||||||||||||||| | |||||||||||||||||||| |||||||||    
T  18849701 atatttaaaccgtgtaacttggggtatgatatgatctccaatttttacctctaa 18849754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 356
Target Start/End: Original strand, 42854492 - 42854629
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    ||||||| |||| | || ||| |||||||||||| | ||||||| | ||| ||||||||| || | | ||||| |  ||||||||| || ||| | | ||    
T  42854492 aaaacacatgaggctcttctccatttcaaccacccagcttgaatacgatgatttacatctgcttctatttctcaaacattttgtacgatggacccaagat 42854591  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctcca 356  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  42854592 atttaaaccgtgtaacttggggtatgatatgatctcca 42854629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 4032982 - 4033120
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| |||||||||   ||| ||||||| | ||   | |||||||| ||| ||||||||  || | | ||    
T  4032982 aaaacacctgaggctcttctccatttcaaccacccaacttgaatatgatgatttacatatgcttttatttctccatcattgtgtactatgaacccaagat 4033081  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    | ||||||||||||||||| | |||||||||||||||||    
T  4033082 acttaaaccgtgtaacttggggtatgatatgatctccaa 4033120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 12492330 - 12492468
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    ||||||| |||| | || ||| |||||||||||| ||| ||||| | || | |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  12492330 aaaacacatgaggctcttctccatttcaaccacccaacctgaatacgatagcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 12492429  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  12492430 atttaaaccgtgtaacttggggtatgatatgatctccaa 12492468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 413
Target Start/End: Original strand, 41444890 - 41444987
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgct-aaattaaattctatatact 413  Q
    |||||||||||  |||||||||| ||||||||||||||||  ||  ||||||||  |||||| | ||||||||||||| |||||| |||| |||||||    
T  41444890 atatttaaaccaagtaacttgtggtatgatatgatctccacctttcacctctaagttagaaatgcttcgccttttgctaaaattacattccatatact 41444987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 15215837 - 15215896
Alignment:
Q  298 tttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||| ||| | ||||||||||||||||||||||  | |||||||||||||||||    
T  15215837 tttgtactatggacccaatatatttaaaccgtgtaactttgggtatgatatgatctccaa 15215896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 36544946 - 36544808
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccat-a 317  Q
    |||||||||||| | ||  || |||||||||||| ||||||||| | |||  |||||||| || | | |||||| | ||||||||| | || | |||| |    
T  36544946 aaaacacctgaggctcttatccatttcaaccacccaacttgaatacgatgacttacatctgcttctatttctccgtcattttgtacgaaagcc-ccatga 36544848  T
Q  318 tatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||| ||||||||| | |||||||||||||||||    
T  36544847 tatttaaaccttgtaacttggggtatgatatgatctccaa 36544808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 30748276 - 30748232
Alignment:
Q  234 ctcctctatttcaaccacctaacttgaattctatggtttacatct 278  Q
    |||||| |||||||||||||| ||||||||| |||||||||||||    
T  30748276 ctcctccatttcaaccacctagcttgaattcgatggtttacatct 30748232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 43732230 - 43732270
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||| ||||||| |||||||||||||||||    
T  43732230 atatttaaaccgtgttacttgtgctatgatatgatctccaa 43732270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 45332073 - 45332113
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  45332073 atatttaaaccgtgtaacttgtggtatgacatgatctccaa 45332113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 351
Target Start/End: Original strand, 8880020 - 8880054
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgat 351  Q
    ||||||||||||||||||||| |||||||||||||    
T  8880020 atatttaaaccgtgtaacttgggatatgatatgat 8880054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 281
Target Start/End: Original strand, 42493774 - 42493852
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcct 281  Q
    ||||||||  ||| ||||||||| |||| |  |||||||||| ||||||| | ||| ||||| ||||||||||||||||    
T  42493774 tactttcgtgtcacataaaacacatgaggccttcctctattttaaccacccagcttaaattccatggtttacatctcct 42493852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 16351199 - 16351162
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctct 240  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  16351199 tactttcacatcacataaaacacctgagacactcctct 16351162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 38328288 - 38328357
Alignment:
Q  212 atcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcct 281  Q
    |||| ||||||||||| ||||||||||  |||||||| ||| |||||  |||| ||| ||||||||||||    
T  38328288 atcacataaaacacctaagacactccttcatttcaactacccaacttagattcaatgatttacatctcct 38328357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 39051129 - 39051060
Alignment:
Q  24 aatattgacatttttcattctatattgtctcgtcttaccatacatccaacacaatatcatcatctatgtt 93  Q
    ||||||| ||||| | |||||||  ||||| ||||||||| ||||| ||||||| ||| |||||||||||    
T  39051129 aatattgtcatttctaattctatcatgtcttgtcttaccacacatctaacacaacatcctcatctatgtt 39051060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 206 - 397
Target Start/End: Complemental strand, 28528388 - 28528197
Alignment:
Q  206 tttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtact 305  Q
    |||||||||| |||||||||||||| |||||||| |||||||||||| | || | |||| |||||||||| ||||| | | ||||||||| |||||||      
T  28528388 tttcgcatcacataaaacacctgaggcactcctcaatttcaaccacccagctcggattcgatggtttacacctccttctatttctccattgttttgtaac 28528289  T
Q  306 atagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaaa 397  Q
    |||||| | | |||||||||| |||||||||||| |||| |||||||||||| ||  |||||||  ||||||||| ||||||| ||||||||    
T  28528288 atagacccaagatatttaaactgtgtaacttgtggtatgctatgatctccaactttcacctctaggctagaaacgcttcgcctcttgctaaa 28528197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 232 - 384
Target Start/End: Complemental strand, 6640907 - 6640755
Alignment:
Q  232 cactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgt 331  Q
    ||||||||||||||||||||| |||||| || | |||||||||| ||||| | | |||||||| |||||||||||||||| | | |||||||||||||||    
T  6640907 cactcctctatttcaaccacccaacttggatccaatggtttacacctccttctatttctccataattttgtactatagactcaagatatttaaaccgtgt 6640808  T
Q  332 aacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttc 384  Q
    |||||||| | | |||||||||| || ||  ||||||| ||||||||||||||    
T  6640807 aacttgtggtgtaatatgatctctaactttcacctctacactagaaacgtttc 6640755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 51601852 - 51601714
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||||| || ||||||||| |||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  51601852 aaaacacctgagactcttctctatttccaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 51601753  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  51601752 atttaaaccgtgtaacttggggtatgatatgatctccaa 51601714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 224 - 357
Target Start/End: Complemental strand, 7921716 - 7921583
Alignment:
Q  224 acctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatattta 323  Q
    ||||||||| ||| || |||||||| ||| ||||||||||| |||||||||||||||| | | ||||| ||  ||||||||||| ||  | | |||| ||    
T  7921716 acctgagaccctcatccatttcaacaacccaacttgaattcgatggtttacatctccttctatttctcaatcgttttgtactatggatccaagatatata 7921617  T
Q  324 aaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    || ||||||||||||| || ||||||||||||||    
T  7921616 aatcgtgtaacttgtggtaagatatgatctccaa 7921583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 357
Target Start/End: Complemental strand, 27445670 - 27445554
Alignment:
Q  241 atttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtga 340  Q
    |||||||||| | ||||||||| | ||| ||||||||| || | | |||||||| |||||||||||| ||| | | ||| ||||||||||||||||| |     
T  27445670 atttcaaccaaccaacttgaatacgatgatttacatctgcttctatttctccatcattttgtactatggacccaacataattaaaccgtgtaacttgggg 27445571  T
Q  341 tatgatatgatctccaa 357  Q
    ||||||| |||||||||    
T  27445570 tatgataagatctccaa 27445554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 357
Target Start/End: Complemental strand, 51234422 - 51234271
Alignment:
Q  205 ctttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtac 304  Q
    |||||| |||| |||||| ||||||| |  | ||| |||||||||||| ||||||||||  ||| ||||||||| || ||| |||||||| |||||| ||    
T  51234422 ctttcgtatcacataaaagacctgaggctattctccatttcaaccacccaacttgaatttgatgatttacatctgcttcaatttctccatcattttgcac 51234323  T
Q  305 tatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||| ||| | | ||||||||||  || |||||||  |||||||||||||||||    
T  51234322 tatggactcaagatatttaaactatgaaacttgt-ttatgatatgatctccaa 51234271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 357
Target Start/End: Complemental strand, 1210517 - 1210401
Alignment:
Q  241 atttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtga 340  Q
    |||||||||||| | ||||||| | |||| |||||||| ||   | |||||||| ||||||||| | |||| | | |||||||||| |||||||||| |     
T  1210517 atttcaaccacccagcttgaatacgatggcttacatctgcttttatttctccatcattttgtacgaaagacccaagatatttaaactgtgtaacttgggg 1210418  T
Q  341 tatgatatgatctccaa 357  Q
    |||||||||||||||||    
T  1210417 tatgatatgatctccaa 1210401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 43240869 - 43241007
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | |||||||   |||| |||||||| || | | |||||| | ||||||||| |  ||  | | ||    
T  43240869 aaaacacctgaggctcttctccatttcaaccacccagcttgaatatgatggcttacatctgcttccatttctccgtcattttgtacgaaggatccaagat 43240968  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  43240969 atttaaaccgtgtaacttggggtatgatatgatctccaa 43241007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 413
Target Start/End: Complemental strand, 40419377 - 40419280
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgct-aaattaaattctatatact 413  Q
    |||||||||| |||||||||||| ||||||||||||||||| ||  |||| ||  ||||||| | || |||||||||| |||||| |||| |||||||    
T  40419377 atatttaaactgtgtaacttgtggtatgatatgatctccaactttcacctttacgctagaaatgctttgccttttgctaaaattacattccatatact 40419280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 355
Target Start/End: Original strand, 34827574 - 34827726
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgt 302  Q
    |||||||  |||| ||||||||| |||| | || ||| ||||||||||   ||||||||| | ||| ||||||| | || | | |||||| | |||||||    
T  34827574 tactttcttatcacataaaacacatgaggctcttctccatttcaaccattcaacttgaatacaatgatttacatatgcttctatttctccgtcattttgt 34827673  T
Q  303 actatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctcc 355  Q
    ||||| ||| | | ||||||||||| ||||||||  | |||||||||||||||    
T  34827674 actatggacccaagatatttaaaccttgtaacttagggtatgatatgatctcc 34827726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 18793460 - 18793503
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttca 246  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||    
T  18793460 tactttcgcatcacataaaacacctgagacactcctccatttca 18793503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 49347881 - 49348020
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | ||||||| | |||| ||||| || || | | |||||| | ||||||||| |  ||| | | ||    
T  49347881 aaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatggcttacacctgcttctatttctccgtcattttgtacgaaggacccaagat 49347980  T
Q  319 atttaaacc-gtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||| |||||||||| | |||||||||||||||||    
T  49347981 atttaaaccagtgtaacttggggtatgatatgatctccaa 49348020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 26016275 - 26016231
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttcaa 247  Q
    |||||| |||||| ||||||||||||||||||||||| |||||||    
T  26016275 tactttagcatcacataaaacacctgagacactcctccatttcaa 26016231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 357
Target Start/End: Original strand, 32083235 - 32083371
Alignment:
Q  221 aacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatat 320  Q
    |||||||||| | || ||| |||||||||||| | ||||||| | ||| ||||||| | |  | | |||||| | |||||||||||| ||| | | ||||    
T  32083235 aacacctgaggctcttctccatttcaaccacccagcttgaatacgatgatttacatttgcctctatttctccgtcattttgtactatggacccaagatat 32083334  T
Q  321 ttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||  ||| |||||| | |||||||||||||||||    
T  32083335 ttaaattgtgcaacttggggtatgatatgatctccaa 32083371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 371
Target Start/End: Complemental strand, 3877545 - 3877491
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaa 371  Q
    |||||||||  |||||| |||||| ||||||| ||||||||||| ||||||||||    
T  3877545 atatttaaattgtgtaatttgtgaaatgatataatctccaatttttacctctaaa 3877491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 8671714 - 8671576
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||| ||||||| | ||||||| | |||  |||||||| || | | |||| | | ||||||||| |  ||| | | ||    
T  8671714 aaaacacctgagtctcttctccattttaaccacccagcttgaatacgatgacttacatctgcttctatttcttcgtcattttgtacgaaggacccaagat 8671615  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||  | |||||||||||||||||    
T  8671614 atttaaaccgtgtaacttagggtatgatatgatctccaa 8671576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 51441252 - 51441390
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    ||||||| |||| | || ||| |||||||||||| | |||||||   |||| ||| |||| || | | |||||| | ||||||||  | |||| | | ||    
T  51441252 aaaacacttgaggctcttctccatttcaaccacccagcttgaatatgatggcttagatctgcttctatttctccgtcattttgtatgaaagacccaagat 51441351  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||| |||||||||| | |||||||||||||||||    
T  51441352 atttaaactgtgtaacttggggtatgatatgatctccaa 51441390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 357
Target Start/End: Complemental strand, 19936294 - 19936177
Alignment:
Q  241 atttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattatttt-gtactatagacaccatatatttaaaccgtgtaacttgtg 339  Q
    |||||||||||| | ||||||| | ||| ||||||| | || | | |||||| | ||||| ||| ||| ||| | | ||||||||||| ||||||||| |    
T  19936294 atttcaaccacccagcttgaatacgatgatttacatatgcttctatttctccttcatttttgtattatggacccaagatatttaaaccatgtaacttggg 19936195  T
Q  340 atatgatatgatctccaa 357  Q
     |||||||||||||||||    
T  19936194 gtatgatatgatctccaa 19936177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 357
Target Start/End: Original strand, 37463378 - 37463491
Alignment:
Q  244 tcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtgatat 343  Q
    ||||||||||| ||| ||| | ||| | ||||||| || | | |||||| | |||||||||||| ||| | | |||||||||| |||||||| |   |||    
T  37463378 tcaaccacctagcttaaatacaatgatatacatctgcttctatttctccgtcattttgtactatggactcaagatatttaaactgtgtaactcggagtat 37463477  T
Q  344 gatatgatctccaa 357  Q
    ||||||||||||||    
T  37463478 gatatgatctccaa 37463491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 370
Target Start/End: Original strand, 32066836 - 32066907
Alignment:
Q  296 attttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaa 370  Q
    ||||||||||||  || | | |||||||||| |||||||||||   |||||||||||||||||||  ||||||||    
T  32066836 attttgtactatgaacccaaaatatttaaactgtgtaacttgt---atgatatgatctccaattttcacctctaa 32066907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 52442823 - 52442899
Alignment:
Q  48 ttgtctcgtcttaccatacatccaacacaatatcatcatctatgttatacttaatctattttcgtgttggttcatta 124  Q
    |||||| ||||||||| ||||||||||||| ||| |||| | || ||  |||||| |||||| |||||| |||||||    
T  52442823 ttgtctagtcttaccacacatccaacacaacatcctcatgtctgctacgcttaatttatttttgtgttgtttcatta 52442899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 203 - 399
Target Start/End: Original strand, 43793515 - 43793708
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgt 302  Q
    ||||||| ||||| |||| |||||||||  ||||||| |||||||||||||| |||  |||  ||||||||||||||||   | |||| | | |||||||    
T  43793515 tactttcacatcacataatacacctgaggaactcctccatttcaaccacctagcttagatttgatggtttacatctcct---atttcttcgtcattttgt 43793611  T
Q  303 actatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaaatt 399  Q
    ||||||||| | | |||||||||  |||||||| ||| |||||||||||||| || ||  ||||||| ||| |||||| ||||||| ||||||||||    
T  43793612 actatagacccaagatatttaaaatgtgtaactagtggtatgatatgatctctaactttcacctctacactcgaaacgcttcgcctcttgctaaatt 43793708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 38606799 - 38606661
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    ||||||||| || | || ||| |||||||||||| | ||||||| | ||||||||||||| || | | |||| | | |||||||||||| ||| | | ||    
T  38606799 aaaacacctaaggctcttctccatttcaaccacccagcttgaatacgatggtttacatctgcttctatttcttcgtcattttgtactatggacccaagat 38606700  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  38606699 atttaaaccgtgtaacttgggatatgatatgatctccaa 38606661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 46356339 - 46356477
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| ||||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  46356339 aaaacacctgaggctcttctccatttcaaccacccaacttgaatacgatggcttacatctgcttctatttctccgtcattttgtacaaaggacccaagat 46356438  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  46356439 atttaaaccgtgtaacttggggtatgatatgatctccaa 46356477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 33350294 - 33350432
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    ||||||| |||| | || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| | |||| | | ||    
T  33350294 aaaacacttgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaagaccctagat 33350393  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  33350394 atttaaaccgtgtaacttggggtatgatatgatctccaa 33350432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 353
Target Start/End: Complemental strand, 11593754 - 11593620
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||||| ||||||||| |  ||| | | ||    
T  11593754 aaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccatcattttgtacgaaggacccaagat 11593655  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatct 353  Q
    ||||||||||| ||||||| | |||||||||||||    
T  11593654 atttaaaccgtctaacttggggtatgatatgatct 11593620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 36651788 - 36651650
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  36651788 aaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 36651689  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||| |||||||| | |||||||||||||||||    
T  36651688 atttaaaccgcgtaacttggggtatgatatgatctccaa 36651650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 31005017 - 31004880
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| ||||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||  | | ||    
T  31005017 aaaacacctgaggctcttctccatttcaaccacccaacttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggagccaagat 31004918  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||| ||||||||||| | |||||||||||||||||    
T  31004917 atttaaa-cgtgtaacttggggtatgatatgatctccaa 31004880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 287 - 357
Target Start/End: Complemental strand, 32630333 - 32630263
Alignment:
Q  287 ttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||| |||||||| ||| ||| | | ||||||||||||||||||||| | |||||||||||||||||    
T  32630333 ttctccatcattttgtaatatggacccaagatatttaaaccgtgtaacttggggtatgatatgatctccaa 32630263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 356
Target Start/End: Complemental strand, 37616710 - 37616573
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    ||||||| |||| | || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  37616710 aaaacacttgaggctcttctccatttcaaccacccagcttgaatacaatggcttacatctgcttctatttctccgtcattttgtacaaaggacccaagat 37616611  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctcca 356  Q
    ||||||| ||||||||||| | ||||||||||||||||    
T  37616610 atttaaatcgtgtaacttggggtatgatatgatctcca 37616573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 357
Target Start/End: Complemental strand, 18637387 - 18637236
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgt 302  Q
    |||||| | |||| ||||||||| |||| |||||||| ||||||||  |  | |||| |||| ||||||||||||| ||   | ||| || | |||||||    
T  18637387 tacttttgtatcacataaaacacatgaggcactcctccatttcaactgctcagcttggattcgatggtttacatcttct---atttccccgtcattttgt 18637291  T
Q  303 actatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||  ||   | |||||||||  ||||||||||||||||||||||||||||||    
T  18637290 actatcaacttaagatatttaaaatgtgtaacttgtgatatgatatgatctccaa 18637236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 357
Target Start/End: Complemental strand, 18650822 - 18650671
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgt 302  Q
    |||||| | |||| ||||||||| |||| |||||||| ||||||||  |  | |||| |||| ||||||||||||| ||   | ||| || | |||||||    
T  18650822 tacttttgtatcacataaaacacatgaggcactcctccatttcaactgctcagcttggattcgatggtttacatcttct---atttccccgtcattttgt 18650726  T
Q  303 actatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||  ||   | |||||||||  ||||||||||||||||||||||||||||||    
T  18650725 actatcaacttaagatatttaaaatgtgtaacttgtgatatgatatgatctccaa 18650671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 36514531 - 36514596
Alignment:
Q  55 gtcttaccatacatccaacacaatatcatcatctatgttatacttaatctattttcgtgttggttc 120  Q
    ||||||||| ||||||||| ||| ||| |||||| || || ||||||| |||||||||||||||||    
T  36514531 gtcttaccacacatccaacgcaacatcctcatctctgctacacttaatttattttcgtgttggttc 36514596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 279
Target Start/End: Complemental strand, 12965764 - 12965677
Alignment:
Q  191 caacttgagtaatactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctc 279  Q
    ||||||||||  || ||||| |||| ||||||||| |||  ||||| || |||||||||||| ||||||||||| |||| |||||||||    
T  12965764 caacttgagtggtattttcgtatcacataaaacacttgatgcactc-tccatttcaaccacccaacttgaattcaatggattacatctc 12965677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 18608276 - 18608316
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  18608276 atatttaaaatgtgtaacttgtgatatgatatgatctccaa 18608316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 18626602 - 18626562
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  18626602 atatttaaaatgtgtaacttgtgatatgatatgatctccaa 18626562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 397
Target Start/End: Complemental strand, 20499791 - 20499711
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaaa 397  Q
    |||||||||  |||||||| ||| ||||||||||||||   ||| | | ||||| ||||||||| ||||||||||||||||    
T  20499791 atatttaaaatgtgtaactggtggtatgatatgatctcatgttttttcgtctaagctagaaacgcttcgccttttgctaaa 20499711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 39906965 - 39907005
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  39906965 atatttaaaccgtgtaacatgggatatgatatgatctccaa 39907005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 357
Target Start/End: Complemental strand, 49029035 - 49028923
Alignment:
Q  245 caaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtgatatg 344  Q
    |||||||| | ||||||| | ||||  ||||||| || | | |||||||| ||||||||| |  ||| | | ||||||||||||||||||||| | ||||    
T  49029035 caaccacccagcttgaatacgatggcatacatctgcttctatttctccatcattttgtacaaaggacccaagatatttaaaccgtgtaacttggggtatg 49028936  T
Q  345 atatgatctccaa 357  Q
    || ||||||||||    
T  49028935 atctgatctccaa 49028923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 357
Target Start/End: Original strand, 24177734 - 24177821
Alignment:
Q  270 tttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||| || | | |||||| | |||||||||||| ||| |   ||||||||||||||||| ||| | |||||||||||||||||    
T  24177734 tttacatctgcttctatttctccgtcattttgtactattgacccgtgatatttaaaccgtgtaaattggggtatgatatgatctccaa 24177821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 346
Target Start/End: Original strand, 24550178 - 24550304
Alignment:
Q  220 aaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatata 319  Q
    |||||| |||||| |||||| |||||||||||| ||||||||||| |   |||||||||||| | | |  ||| |  ||||||| ||| |||   | |||    
T  24550178 aaacacgtgagaccctcctccatttcaaccacccaacttgaattcaacaatttacatctccttctattaatccgtcgttttgtaatatggactaaagata 24550277  T
Q  320 tttaaaccgtgtaacttgtgatatgat 346  Q
    |||||| |||||||||| |||||||||    
T  24550278 tttaaatcgtgtaacttatgatatgat 24550304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 355
Target Start/End: Complemental strand, 48919182 - 48919046
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||| ||| | ||||||| | ||| || |||| | || | | |||||| | |||||||||||| ||  | | ||    
T  48919182 aaaacacctgaggctcttctccatttcaactacccagcttgaatacgatgattcacatatgcttctatttctccgtcattttgtactatggatccaaaat 48919083  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctcc 355  Q
    ||||||||||||||||||| | | | |||||||||||    
T  48919082 atttaaaccgtgtaacttggggtgtaatatgatctcc 48919046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 25191173 - 25191035
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||||| || ||| |||||||||||| | ||||||| | ||| ||||||| | || | | |||||||| |||||||||||||||| | | ||    
T  25191173 aaaacacctgagactcttctccatttcaaccacccagcttgaatacgatgatttacatttgcttctatttctccatcattttgtactatagacccaagat 25191074  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  25191073 atttaaaccgtgtaacttgggctatgatatgatctccaa 25191035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 38849888 - 38849750
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | |||||||||| | ||| | | ||    
T  38849888 aaaacacctgaggctcttctccatttcaaccacccagcttgaatacaatggcttacatctgcttctatttctccgtcattttgtactgtggacccaagat 38849789  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||| ||| | |||||||||||||||||    
T  38849788 atttaaaccgtgtaaattgaggtatgatatgatctccaa 38849750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 241 - 397
Target Start/End: Complemental strand, 44395199 - 44395046
Alignment:
Q  241 atttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtga 340  Q
    ||||||||||| |||||||||||| ||||||||||||| ||   | |||||  || ||| ||||||| ||| | | ||||||||| ||||||||||| |     
T  44395199 atttcaaccacttaacttgaattcgatggtttacatcttct---atttctctgttgtttagtactatggacccgagatatttaaatcgtgtaacttgcgt 44395103  T
Q  341 tatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaaa 397  Q
    | || |||||||||||| ||  | |||||||||||||| | || |||||||||||||    
T  44395102 tgtggtatgatctccaactttcatctctaaactagaaatgctttgccttttgctaaa 44395046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 212 - 357
Target Start/End: Complemental strand, 27917373 - 27917228
Alignment:
Q  212 atcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagac 311  Q
    |||| ||||||||| |||| | || |||||||||| | ||| ||||||||| | ||| |||| || | ||   | |||||| | |||||||||||| |||    
T  27917373 atcacataaaacacatgaggctcttctctatttcagctacccaacttgaatacgatgatttatatatgcttatatttctccgtcattttgtactatggac 27917274  T
Q  312 accatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
     | | ||||||||||||||||||||| |||||||||||||||||||    
T  27917273 tcaagatatttaaaccgtgtaacttgggatatgatatgatctccaa 27917228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 317 - 397
Target Start/End: Original strand, 1448199 - 1448279
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaaa 397  Q
    ||||||||||| || ||||| |||||||||||||||||||| || ||||||||| ||||||| ||||| ||| ||| ||||    
T  1448199 atatttaaaccatgcaacttttgatatgatatgatctccaacttttacctctaagctagaaatgtttcacctcttgttaaa 1448279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 195 - 391
Target Start/End: Complemental strand, 46145971 - 46145775
Alignment:
Q  195 ttgagtaatactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccat 294  Q
    ||||| |||||||| | ||||||||||||||| | | |  | ||| ||| |||||| ||||||||||||| |||||||||| ||| | | | | || | |    
T  46145971 ttgagcaatacttttgaatcatataaaacaccggtggccttgctccattccaaccatctaacttgaattcaatggtttacacctctttctattgctacgt 46145872  T
Q  295 tattttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgcctttt 391  Q
      ||||||||||| ||| | | ||||||||||||| ||||||||| ||||| || |||||||| ||  ||||||||  || ||| | ||||||||||    
T  46145871 cgttttgtactatggactcaaaatatttaaaccgtataacttgtggtatgacataatctccaactttaacctctaagttaaaaatgcttcgcctttt 46145775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 338
Target Start/End: Complemental strand, 11581266 - 11581119
Alignment:
Q  191 caacttgagtaatactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttct 290  Q
    |||||||||  ||||||||| |||| ||||||||||||||||| || |  ||||||||||   |  ||||||  |||| |||| ||||||  ||| ||||    
T  11581266 caacttgagcgatactttcgaatcacataaaacacctgagacattcattcatttcaaccattcagtttgaatcttatgatttatatctccatcaatttct 11581167  T
Q  291 ccattattttgtactatagacaccatatatttaaaccgtgtaacttgt 338  Q
    | || ||||||||| |||||| | ||||||||||||  ||||||||||    
T  11581166 caatcattttgtaccatagacccgatatatttaaactttgtaacttgt 11581119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 28245231 - 28245093
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||| ||||||| || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||||| ||||||||| |  ||  | | ||    
T  28245231 aaaacaactgagactcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccatcattttgtacgaaggatccaagat 28245132  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||| |||||||||||| | ||| |||||||||||||    
T  28245131 atttaagccgtgtaacttggggtattatatgatctccaa 28245093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 47542199 - 47542337
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | |||||||   |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  47542199 aaaacacctgaggctcttctccatttcaaccacccagcttgaatatgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 47542298  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | ||||| |||||||||||    
T  47542299 atttaaaccgtgtaacttggggtatgaaatgatctccaa 47542337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 51448197 - 51448335
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||| ||| | || ||| |||||||||||| | ||||||| | || | |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  51448197 aaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatagcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 51448296  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  51448297 atttaaaccgtgtaacttggggtatgatatgatctccaa 51448335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 50632288 - 50632372
Alignment:
Q  191 caacttgagtaatactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttaca 275  Q
    ||||||||||  ||||||| ||||| ||||||||  | || |||||||| |||||||||||| |  |||||||||||||||||||    
T  50632288 caacttgagtggtactttctcatcacataaaacatttaaggcactcctccatttcaaccacccaggttgaattctatggtttaca 50632372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 19757787 - 19757724
Alignment:
Q  294 ttattttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||||||| ||| | | ||||||||||| ||||||||| | |||||||||||||||||    
T  19757787 ttattttgtactatggacccaagatatttaaaccatgtaacttggggtatgatatgatctccaa 19757724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 50632442 - 50632528
Alignment:
Q  192 aacttgagtaatactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatct 278  Q
    |||||||||  ||||||| ||||| ||||||||| | || |||||||| || ||||||||| |  |||||||||||||||| |||||    
T  50632442 aacttgagtggtactttctcatcacataaaacacttaaggcactcctccatctcaaccacccaggttgaattctatggtttccatct 50632528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 49841572 - 49841503
Alignment:
Q  50 gtctcgtcttaccatacatccaacacaatatcatcatctatgttatacttaatctattttcgtgttggtt 119  Q
    |||| ||||||| | ||||||||||||| ||| ||||||||| || ||||||| ||||||| ||||||||    
T  49841572 gtctagtcttactacacatccaacacaacatcctcatctatgctacacttaatttattttcttgttggtt 49841503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 357
Target Start/End: Complemental strand, 29817280 - 29817161
Alignment:
Q  237 ctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgtaactt 336  Q
    |||||||||||||||| ||||||||| | ||| ||||||||| |    | || ||| | |||||||||||| | ||  | |||||| |||||||||||||    
T  29817280 ctctatttcaaccacccaacttgaatacgatgatttacatctgccgttatttatccgtcattttgtactatggtcaa-agatatttgaaccgtgtaactt 29817182  T
Q  337 gtgatatgatatgatctccaa 357  Q
     || |||||||||||||||||    
T  29817181 atggtatgatatgatctccaa 29817161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 30345323 - 30345267
Alignment:
Q  217 ataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggttta 273  Q
    |||||||||||||||| || ||| |||||||||||| ||||||||| ||||| ||||    
T  30345323 ataaaacacctgagactcttctccatttcaaccacccaacttgaatactatgattta 30345267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 52138524 - 52138484
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  52138524 atatttaaaccgtgtaacttggggtatgatatgatctccaa 52138484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 281
Target Start/End: Complemental strand, 805712 - 805634
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcct 281  Q
    ||||||| ||||| |||||| |||| |  ||||||||||||||||||||| | |||  |||||||| |||||| |||||    
T  805712 tactttcacatcacataaaatacctaatgcactcctctatttcaaccacccatcttagattctatgatttacaactcct 805634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 351
Target Start/End: Complemental strand, 9258575 - 9258541
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgat 351  Q
    ||||||||||||||||||||| |||||||||||||    
T  9258575 atatttaaaccgtgtaacttgggatatgatatgat 9258541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 24302013 - 24302062
Alignment:
Q  227 tgagacactcctctatttcaaccacctaacttgaattctatggtttacat 276  Q
    |||| |||| |||||||| ||||||||||||| ||||||||| |||||||    
T  24302013 tgaggcacttctctattttaaccacctaacttaaattctatgatttacat 24302062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 1448078 - 1448134
Alignment:
Q  196 tgagtaatactttcgcatcatataaaacacctgagacactcctctatttcaaccacc 252  Q
    |||||| ||||||||||||| |||||||||  ||| || ||||| ||||||||||||    
T  1448078 tgagtagtactttcgcatcacataaaacacacgaggcattcctccatttcaaccacc 1448134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 19736862 - 19736822
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||| ||||||||| | |||||||||||||||||    
T  19736862 atatttaaaccatgtaacttggggtatgatatgatctccaa 19736822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 219 - 420
Target Start/End: Complemental strand, 3394504 - 3394303
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | |  ||| |||||||||||| | ||||||| | ||| ||||||||| || | | |||||| | |||||||||||| ||| | | ||    
T  3394504 aaaacacctgaggctcatctccatttcaaccacccagcttgaatacgatgatttacatctgcttctatttctccgtcattttgtactatggacccaagat 3394405  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaaattaaattctatatactccgtc 418  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  ||||| ||  ||||  |  ||| ||||||||| ||||| |||| |||||||| |||    
T  3394404 atttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacccacttctccttttgctgaattacattccatatactctgtc 3394305  T
Q  419 tt 420  Q
    ||    
T  3394304 tt 3394303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 219 - 367
Target Start/End: Original strand, 12492875 - 12493023
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  12492875 aaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 12492974  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctc 367  Q
    ||||||||||||||||||| | ||||||||||||||||| || ||||||    
T  12492975 atttaaaccgtgtaacttggggtatgatatgatctccaacttttacctc 12493023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 354
Target Start/End: Complemental strand, 21915696 - 21915545
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgt 302  Q
    |||||| |||||  |||||||| ||||| |||||||| |||||||| ||| |||||| | || ||||||||  | |||| | | |||| | |||||||||    
T  21915696 tacttttgcatcgcataaaacatctgaggcactcctccatttcaactacccaacttggactcaatggtttaattttccttctatttcttcgttattttgt 21915597  T
Q  303 actatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctc 354  Q
    ||||| ||  | ||||||||||||||||||||||||  |||||||| |||||    
T  21915596 actattgaaccaatatatttaaaccgtgtaacttgtattatgatataatctc 21915545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 3301643 - 3301505
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | |  |||||||||||||||| | ||||||| | ||| ||| ||||| || | | |||||| | |||| ||||||| ||| | | ||    
T  3301643 aaaacacctgaggctcatctctatttcaaccacccagcttgaatacgatgatttgcatctgcttctatttctccttcatttggtactatggacccaagat 3301544  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  3301543 atttaaaccgtgtaacttggggtatgatatgatctccaa 3301505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 16347891 - 16348028
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||||| ||||||| | ||| |||||||   ||   | |||||| | |||||||||||| ||||| | ||    
T  16347891 aaaacacctgaggctcttctccatttcaaccaccta-cttgaatacgatgatttacatacgcttttatttctccgtcattttgtactatggacacaagat 16347989  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  16347990 atttaaaccgtgtaacttggggtatgatatgatctccaa 16348028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 1288077 - 1288215
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    ||||||| |||| | || ||| |||||||||| | ||||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  1288077 aaaacacatgaggctcttctccatttcaaccatccaacttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggactcaagat 1288176  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  1288177 atttaaaccgtgtaacttggggtatgatatgatctccaa 1288215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 2075962 - 2076100
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||  |||||||||||| ||||||||| | |||| |||||||| || | | |||||  | ||||||||| |  ||| | | ||    
T  2075962 aaaacacctgaggctcttcttcatttcaaccacccaacttgaatacgatggcttacatctgcttctatttctctgtcattttgtacgaaggacccaagat 2076061  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  2076062 atttaaaccgtgtaacttggggtatgatatgatctccaa 2076100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 20318785 - 20318647
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | |||||||   |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  20318785 aaaacacctgaggctcttctccatttcaaccacccagcttgaatatgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 20318686  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  20318685 atttaaaccgtgtaacttggggtatgatatgatctccaa 20318647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 357
Target Start/End: Complemental strand, 1275037 - 1274921
Alignment:
Q  241 atttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtga 340  Q
    |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||||||||||||||||||||| |     
T  1275037 atttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgtaacttgggg 1274938  T
Q  341 tatgatatgatctccaa 357  Q
    |||||||||||||||||    
T  1274937 tatgatatgatctccaa 1274921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 10639091 - 10638953
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    ||||||||| || | || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  10639091 aaaacacctaaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 10638992  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | ||||||||||| |||||    
T  10638991 atttaaaccgtgtaacttggggtatgatatgatttccaa 10638953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 15370739 - 15370812
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacat 276  Q
    |||||| |||||| |||||| |  ||||||||||||| ||||||||||| || ||||||||| |||||||||||    
T  15370739 tacttttgcatcacataaaatatttgagacactcctccatttcaaccacttagcttgaattcaatggtttacat 15370812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 398
Target Start/End: Original strand, 43558400 - 43558481
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaaat 398  Q
    ||||||||| ||||||||||||| |||| |||||||||||| ||  |||||| | ||||||||  || ||||||||||||||    
T  43558400 atatttaaatcgtgtaacttgtggtatgctatgatctccaactttcacctctgagctagaaacactttgccttttgctaaat 43558481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 397
Target Start/End: Original strand, 6368491 - 6368591
Alignment:
Q  297 ttttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaa 396  Q
    |||||||||||||| || | |||||||||  |||||||||||| |||| |||||||||||  ||  ||||||| | |||||| ||||| ||| |||||||    
T  6368491 ttttgtactatagatacaagatatttaaattgtgtaacttgtggtatgttatgatctccatctttcacctctacattagaaatgtttcacctcttgctaa 6368590  T
Q  397 a 397  Q
    |    
T  6368591 a 6368591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 370
Target Start/End: Original strand, 28977345 - 28977496
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||| ||| | || ||| |||||||||||| | ||||||| | |||| |||||||| || | | | |||| | ||||||||| |  ||| | | ||    
T  28977345 aaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctacttctattactccgtcattttgtacgaaggacccaagat 28977444  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaa 370  Q
    ||||||||||||| ||||| | ||||||||||||||||| ||  ||||||||    
T  28977445 atttaaaccgtgtgacttggggtatgatatgatctccaactttcacctctaa 28977496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 24178318 - 24178180
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    ||||||| |||| | || ||| |||||||||||| |||||||||   |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  24178318 aaaacacttgaggctcttctccatttcaaccacccaacttgaatatgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 24178219  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
     |||||||||||||||||  | |||||||||||||||||    
T  24178218 ctttaaaccgtgtaacttagggtatgatatgatctccaa 24178180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 16134505 - 16134570
Alignment:
Q  55 gtcttaccatacatccaacacaatatcatcatctatgttatacttaatctattttcgtgttggttc 120  Q
    ||||||||||||||||||||||| ||| |||| |||| |||||||| | ||| || ||||||||||    
T  16134505 gtcttaccatacatccaacacaacatcctcatttatgctatacttactatatgtttgtgttggttc 16134570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 357
Target Start/End: Original strand, 38578976 - 38579127
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgt 302  Q
    |||||| | |||| ||||||||| |||| |||||||| |||||||||||  | |||| |||| || |||||||||| ||     ||  || | |||||||    
T  38578976 tacttttgtatcacataaaacacatgaggcactcctccatttcaaccactcagcttggattcgatcgtttacatcttctgt---tttcccgtcattttgt 38579072  T
Q  303 actatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||  || | | |||||||||| |||||||||||| ||| |||||||||||||    
T  38579073 actatcaactcaagatatttaaactgtgtaacttgtgctataatatgatctccaa 38579127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 27998394 - 27998315
Alignment:
Q  40 attctatattgtctcgtcttaccatacatccaacacaatatcatcatctatgttatacttaatctattttcgtgttggtt 119  Q
    ||||||| |||||| ||||||||| ||||||||| ||| ||| |||||| || ||| ||||||  | |||||||||||||    
T  27998394 attctattttgtctagtcttaccacacatccaacgcaacatcctcatctctgatatgcttaattcactttcgtgttggtt 27998315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 414
Target Start/End: Original strand, 17341757 - 17341885
Alignment:
Q  287 ttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgc 386  Q
    ||||| || ||||| |||||| ||| | ||||||||||||| ||||| ||  | ||||||||||||||||| ||  ||||| ||  ||||| | ||| ||    
T  17341757 ttctctatcattttctactatggacccaatatatttaaaccatgtaatttcaggtatgatatgatctccaacttccacctccaaggtagaaccatttggc 17341856  T
Q  387 cttttgctaaa-ttaaattctatatactc 414  Q
    ||||| ||||| ||| |||| ||||||||    
T  17341857 ctttttctaaagttacattccatatactc 17341885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 27302513 - 27302573
Alignment:
Q  297 ttttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||| ||| ||||| | ||||||||||||||||  ||| | |||||||||||||||||    
T  27302513 ttttgtattatggacacaagatatttaaaccgtgtagtttgaggtatgatatgatctccaa 27302573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 9706570 - 9706432
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||  | || ||| |||||||||||| | ||||||| | ||| |||||| || || | | |||||||| ||||||||| || ||| | | ||    
T  9706570 aaaacacctgatgctcttctccatttcaaccacccagcttgaatacgatgatttacacctgcttctatttctccatcattttgtaccatggacccaagat 9706471  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  9706470 atttaaaccgtgtaacttggggtatgatatgatctccaa 9706432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 354
Target Start/End: Complemental strand, 5631612 - 5631476
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccata- 317  Q
    |||||||| ||||| || ||| |||||||||||| | ||||||| | ||| ||||||||| || | | |||||| | |||||||||||| ||| | | |     
T  5631612 aaaacacccgagactcttctccatttcaaccacccagcttgaatacgatgatttacatctgcttctatttctccgtcattttgtactatggacccaaaaa 5631513  T
Q  318 tatttaaaccgtgtaacttgtgatatgatatgatctc 354  Q
    |||||||||||||||||||| | ||||||||||||||    
T  5631512 tatttaaaccgtgtaacttggggtatgatatgatctc 5631476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 5258638 - 5258776
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    ||||||| |||| | || ||| |||||||||||| | ||||||| | ||| | ||||||  || | | |||||| | |||||||||||| ||| | | ||    
T  5258638 aaaacacatgaggctcttctccatttcaaccacccagcttgaatacgatgatgtacatcagcttctatttctccgtcattttgtactatggacccaagat 5258737  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||| |||||||||| | |||||||||||||||||    
T  5258738 atttaaactgtgtaacttggggtatgatatgatctccaa 5258776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 213 - 311
Target Start/End: Complemental strand, 7079934 - 7079836
Alignment:
Q  213 tcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagac 311  Q
    ||||||||| |||||||| |||| ||  |||||||||| | | |||||||| ||||||||| || |||| ||| ||||||||  |||||||||||||||    
T  7079934 tcatataaagcacctgaggcactacttaatttcaaccatccagcttgaattttatggtttagatttccttcaatttctccatcgttttgtactatagac 7079836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 20428124 - 20428262
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||| ||| | || ||| |||||||||||| | |||| || | ||| ||||||||| || | | || ||| |  ||||||||| | ||| | ||||    
T  20428124 aaaacacccgaggctcttctccatttcaaccacccagcttggatacgatgatttacatctgcttctatttttccgtcgttttgtactgtggacccaatat 20428223  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  20428224 atttaaaccgcgtaacttgtggtatgatatgatctccaa 20428262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 357
Target Start/End: Original strand, 10100422 - 10100483
Alignment:
Q  296 attttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||||| ||| | | ||||||||||||||||||||| | |||||||||||||||||    
T  10100422 attttgtactatggacccaagatatttaaaccgtgtaacttggggtatgatatgatctccaa 10100483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 2689372 - 2689313
Alignment:
Q  297 ttttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctcca 356  Q
    ||||||||||||||| | | ||||||||||||||||||||  | ||||||||||||||||    
T  2689372 ttttgtactatagacccaaaatatttaaaccgtgtaacttagggtatgatatgatctcca 2689313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 6641914 - 6641988
Alignment:
Q  235 tcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatag 309  Q
    ||||| |||||||||||| ||||| ||||| |||||||||||||||| | | |||||  | ||||||||||||||    
T  6641914 tcctccatttcaaccacccaactttaattcaatggtttacatctccttctatttctctctcattttgtactatag 6641988  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 385
Target Start/End: Original strand, 8811940 - 8812030
Alignment:
Q  295 tattttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcg 385  Q
    |||||||||||||||||   | |||||||||   ||||||||||| ||||||||||||| |||| |  |||| |||| |||||||| ||||    
T  8811940 tattttgtactatagacttgagatatttaaattttgtaacttgtggtatgatatgatcttcaatgttcacctgtaaattagaaacgcttcg 8812030  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 300
Target Start/End: Original strand, 19338459 - 19338547
Alignment:
Q  212 atcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattatttt 300  Q
    |||| |||||||||| ||  | |||||  |||||| | ||||||||||||| ||||| ||||||||||| || | |||||||| |||||    
T  19338459 atcacataaaacacccgaagctctcctgcatttcatctacctaacttgaatcctatgatttacatctccccctatttctccatcatttt 19338547  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 20834380 - 20834440
Alignment:
Q  55 gtcttaccatacatccaacacaatatcatcatctatgttatacttaatctattttcgtgtt 115  Q
    |||||| || ||||||||||||||||| ||||||| |||||| ||| | |||| |||||||    
T  20834380 gtcttatcacacatccaacacaatatcctcatctacgttatatttattttattctcgtgtt 20834440  T

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Target: scaffold0606 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 397
Target Start/End: Complemental strand, 9353 - 9273
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaaa 397  Q
    ||||||||| |||||||||  | |||||||||||||||||| || ||||||||||||||||||  ||| ||||||||||||    
T  9353 atatttaaatcgtgtaactaataatatgatatgatctccaacttttacctctaaactagaaacaattcaccttttgctaaa 9273  T

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Target: scaffold0024 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 357
Target Start/End: Complemental strand, 82489 - 82377
Alignment:
Q  245 caaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtgatatg 344  Q
    |||||||| | ||||||| | ||| ||||||||| || | | |||||| | ||||| |||||| ||| | | ||||||||||||||||||||||| ||||    
T  82489 caaccacccagcttgaatacgatgatttacatctgcttctatttctccgtcattttttactatggacccaagatatttaaaccgtgtaacttgtggtatg 82390  T
Q  345 atatgatctccaa 357  Q
    |||| ||||||||    
T  82389 atataatctccaa 82377  T

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Target: scaffold0570 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 2758 - 2896
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | ||||||| | |||  |||||||| || | | |||| | | ||||||||| |  ||| | | ||    
T  2758 aaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatgacttacatctgcttctatttcttcgtcattttgtacgaaggacccaagat 2857  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  2858 atttaaaccgtgtaacttggggtatgatatgatctccaa 2896  T

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Target: scaffold0113 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 357
Target Start/End: Original strand, 12154 - 12224
Alignment:
Q  287 ttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||| | |||||||||||| ||| | | ||||||||||| ||||||||| | |||||||||||||||||    
T  12154 ttctccgtcattttgtactatggacccaagatatttaaaccatgtaacttggggtatgatatgatctccaa 12224  T

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Target: scaffold0171 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 5888 - 5848
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  5888 atatttaaaccgtgtaacttggggtatgatatgatctccaa 5848  T

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Target: scaffold0896 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 385
Target Start/End: Original strand, 4386 - 4476
Alignment:
Q  295 tattttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcg 385  Q
    |||||||||||||||||   | |||||||||   ||||||||||| ||||||||||||| |||| |  |||| |||| |||||||| ||||    
T  4386 tattttgtactatagacttgagatatttaaattttgtaacttgtggtatgatatgatcttcaatgttcacctgtaaattagaaacgcttcg 4476  T

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Target: scaffold0018 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 31262 - 31124
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    ||||||| |||| | || ||| |||||||||||| | ||||||| | ||||  ||||||| ||   | |||||| | ||||||||| |  ||| | | ||    
T  31262 aaaacacttgaggctcttctccatttcaaccacccagcttgaatacgatggcctacatctacttttatttctccgtcattttgtacgaaggacccaagat 31163  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
     |||||||||||||||||| | |||||||||||||||||    
T  31162 gtttaaaccgtgtaacttggggtatgatatgatctccaa 31124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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