View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20175_high_13 (Length: 437)
Name: NF20175_high_13
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20175_high_13 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 29198306 - 29197888
Alignment:
| Q |
1 |
atagtaccatagtattggtatgactccaaaaaaggaggttaagagatttatgactttaggtatacatcacaatagtatatatgtgcattaaaatttgctt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
29198306 |
atagtaccacagtattggtatgactccaaaaaaggaggttaagagatttatgactttaggtatacatcacaatagtatatatgtgcattaaagtttgctt |
29198207 |
T |
|
| Q |
101 |
catcaatctttgacaagcatacagaaaaatgaaataatgtnnnnnnntacaaatccttaaataacgctagggtaattccaccaaacaggaataccaataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29198206 |
catcaatctttgacaagcatacagaaaaattaaataatgtaaaaaaatacaaatccttaaataacgctagggtaattccaccaaacaggaataccaataa |
29198107 |
T |
|
| Q |
201 |
caacactattagagttcttggtaccaacatcaattccagttaaccgatcaccataactctttttatctgccgttgttttatttttcaccacggtaaccga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29198106 |
caacactattagagttcttggtaccaacatcaattccagttaaccgatcaccataactctttttatctgccgttgttttatttttcaccacggtaaccga |
29198007 |
T |
|
| Q |
301 |
tcttttctccggcataaccaccctcacaccaaaatgaataactccattttgcctcccttcccagttcctcaatttataactcaaaatccgggaacaattt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29198006 |
tcttttctccggcataaccaccctcacaccaaaatgaataactccattttgcctcccttcccagttcctcaatttataactcaaaatccgggaacaattt |
29197907 |
T |
|
| Q |
401 |
tccaattcagccccgttta |
419 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
29197906 |
tccaattcagccccgttta |
29197888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 4e-82; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 157 - 419
Target Start/End: Complemental strand, 12271428 - 12271166
Alignment:
| Q |
157 |
ttaaataacgctagggtaattccaccaaacaggaataccaataacaacactattagagttcttggtaccaacatcaattccagttaaccgatcaccataa |
256 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||| ||||||||| |
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|
| T |
12271428 |
ttaaataatgttagggtaattccaccaaacaggaataccaataacagcaccattagagttcttcgtaccaacatcaattccagttaaccggtcaccataa |
12271329 |
T |
|
| Q |
257 |
ctctttttatctgccgttgttttatttttcaccacggtaaccgatcttttctccggcataaccaccctcacaccaaaatgaataactccattttgcctcc |
356 |
Q |
| |
|
|||||| ||| ||| | || || | | |||||||||||| ||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12271328 |
ctctttccatccgccaccggttgcttctccgccacggtaaccgttctttgctctggcacaaccaccctcacaccaaaatgaataactccattttgcctcc |
12271229 |
T |
|
| Q |
357 |
cttcccagttcctcaatttataactcaaaatccgggaacaattttccaattcagccccgttta |
419 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || |||||||||||| ||||| ||||||||| |
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|
| T |
12271228 |
cttcccaattcctcaatttataactcaaaattcgtgaacaattttccgattcatccccgttta |
12271166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 148 - 419
Target Start/End: Complemental strand, 12288103 - 12287832
Alignment:
| Q |
148 |
tacaaatccttaaataacgctagggtaattccaccaaacaggaataccaataacaacactattagagttcttggtaccaacatcaattccagttaaccga |
247 |
Q |
| |
|
|||||||| ||||| || || ||||||||||||| || |||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12288103 |
tacaaatctttaaacaatgccggggtaattccacctaaaaggaataccaataacacctccattagagttcttggtaccaacatcaattccagttaaccga |
12288004 |
T |
|
| Q |
248 |
tcaccataactctttttatctgccgttgttttatttttcaccacggtaaccgatcttttctccggcataaccaccctcacaccaaaatgaataactccat |
347 |
Q |
| |
|
|||||||||||||| ||| ||| ||||| |||| | |||| ||||||||||||| ||| ||| ||||||| |||||||||||||||||||||||| |
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|
| T |
12288003 |
tcaccataactcttcccatccgccagtgtttccttttccgccaccgtaaccgatctttcctctggcgcaaccaccttcacaccaaaatgaataactccat |
12287904 |
T |
|
| Q |
348 |
tttgcctcccttcccagttcctcaatttataactcaaaatccgggaacaattttccaattcagccccgttta |
419 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||| || |||||||||||| ||||||||||||||| |
|
|
| T |
12287903 |
tttgcctcccttcccaatctctcaatttataactcaaaattcgtgaacaattttccgattcagccccgttta |
12287832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 66 - 403
Target Start/End: Complemental strand, 12257512 - 12257178
Alignment:
| Q |
66 |
atcacaatagtatatatgtgcattaaaatttgcttcatcaatctttgacaagcatacagaaaaatgaaataatgtnnnnnnntacaaatccttaaataac |
165 |
Q |
| |
|
||||||||| ||||| ||||||| |||||| |||||| ||||||||||||| || || |||||| ||||||| | || |||| |||||||| |
|
|
| T |
12257512 |
atcacaataatatat-tgtgcatcaaaattgacttcattaatctttgacaagaatgca-aaaaatcaaataatataaa----tataaatatttaaataat |
12257419 |
T |
|
| Q |
166 |
gctagggtaattccaccaaacaggaataccaataacaacactattagagttcttggtaccaacatcaattccagttaaccgatcaccataactcttttta |
265 |
Q |
| |
|
| | |||||||||||||||| |||||||||||| |||||| |||||||| ||||||||||||||| ||||||||||||||| |||||||| ||||| | |
|
|
| T |
12257418 |
gtttgggtaattccaccaaaacggaataccaatagcaacaccattagagtccttggtaccaacatccattccagttaaccgaccaccataattctttcca |
12257319 |
T |
|
| Q |
266 |
tctgccgttgttttatttttcacc---acggtaaccgatcttttctccggcataaccaccctcacaccaaaatgaataactccattttgcctcccttccc |
362 |
Q |
| |
|
|| || || | |||| ||| |||||| ||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
12257318 |
tccgcgacagtctgcttttcaaccgccacggtagccgatgttttctccggcacaaccaccctcacactgaaatgaataactccattttgcctcccttccc |
12257219 |
T |
|
| Q |
363 |
agttcctcaatttataactcaaaatccgggaacaattttcc |
403 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
12257218 |
agttcctcaatttataactcaaaatttgcaaacaattttcc |
12257178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 66 - 403
Target Start/End: Complemental strand, 12264904 - 12264570
Alignment:
| Q |
66 |
atcacaatagtatatatgtgcattaaaatttgcttcatcaatctttgacaagcatacagaaaaatgaaataatgtnnnnnnntacaaatccttaaataac |
165 |
Q |
| |
|
||||||||| ||||| ||||||| |||||| |||||| ||||||||||||| || || |||||| ||||||| | || |||| |||||||| |
|
|
| T |
12264904 |
atcacaataatatat-tgtgcatcaaaattgacttcattaatctttgacaagaatgca-aaaaatcaaataatataaa----tataaatatttaaataat |
12264811 |
T |
|
| Q |
166 |
gctagggtaattccaccaaacaggaataccaataacaacactattagagttcttggtaccaacatcaattccagttaaccgatcaccataactcttttta |
265 |
Q |
| |
|
| | |||||||||||||||| |||||||||||| |||||| |||||||| ||||||||||||||| ||||||||||||||| |||||||| ||||| | |
|
|
| T |
12264810 |
gtttgggtaattccaccaaaacggaataccaatagcaacaccattagagtccttggtaccaacatccattccagttaaccgaccaccataattctttcca |
12264711 |
T |
|
| Q |
266 |
tctgccgttgttttatttttcacc---acggtaaccgatcttttctccggcataaccaccctcacaccaaaatgaataactccattttgcctcccttccc |
362 |
Q |
| |
|
|| || || | |||| ||| |||||| ||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12264710 |
tccgcgacagtctgcttttcaaccgccacggtagccgatgttttctccggcacaaccaccctcacactgaaatgaataactccattttgcctcccttccc |
12264611 |
T |
|
| Q |
363 |
agttcctcaatttataactcaaaatccgggaacaattttcc |
403 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
12264610 |
agttcctcaatttataactcaaaatttgcaaacaattttcc |
12264570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 102 - 403
Target Start/End: Complemental strand, 12283297 - 12282998
Alignment:
| Q |
102 |
atcaatctttgacaagcatacagaaaaatgaaataatgtnnnnnnntacaaatccttaaataacgctagggtaattccaccaaacaggaataccaataac |
201 |
Q |
| |
|
||||||||||||||||||| || |||||| ||||||||| |||||||| |||||||| | |||||||||||||||||| |||| ||||||| | |
|
|
| T |
12283297 |
atcaatctttgacaagcatgcaaaaaaattaaataatgtaaaaaa-tacaaatc-ttaaataatgttagggtaattccaccaaaagggaaaaccaatagc |
12283200 |
T |
|
| Q |
202 |
aacactattagagttcttggtaccaacatcaattccagttaaccgatcaccataactctttttatctgccgttgttttatttttcaccacggtaaccgat |
301 |
Q |
| |
|
||||| |||| |||||||| ||||||||| |||||||||||||| ||||| || ||||| || | |||| || | | |||||||||| ||| |
|
|
| T |
12283199 |
aacaccattacagttcttgacaccaacatccattccagttaaccggccaccacaattctttccatgcatcaccgtttgcttctccgccacggtaactgat |
12283100 |
T |
|
| Q |
302 |
cttttctccggcataaccaccctcacaccaaaatgaataactccattttgcctcccttcccagttcctcaatttataactcaaaatccgggaacaatttt |
401 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | |||||||||| |
|
|
| T |
12283099 |
ctttcctccggcacaaccaccctcacactgaaatgaataactccattttgcctcccttcccaatccctcaatttataactcaaaatttgcgaacaatttt |
12283000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 99 - 403
Target Start/End: Complemental strand, 12267577 - 12267272
Alignment:
| Q |
99 |
ttcatcaatctttgacaagcatacagaaaaatgaaataatgtnnnnnnntacaaatccttaaataacgctagggtaattccaccaaacaggaataccaat |
198 |
Q |
| |
|
||||||||||||| |||||||| || |||||||||||||||| |||||||| |||||||| | ||||||||||||| |||| |||| |||||| |
|
|
| T |
12267577 |
ttcatcaatctttaacaagcatgcaaaaaaatgaaataatgtaaaaaa-tacaaatc-ttaaataatgttagggtaattccatcaaaagggaaaaccaat |
12267480 |
T |
|
| Q |
199 |
aacaacactattagagttcttggtaccaaca---tcaattccagttaaccgatcaccataactctttttatctgccgttgttttatttttcaccacggta |
295 |
Q |
| |
|
| |||||| ||||||||||||| ||||||| || |||||||||||||| ||||| || ||||| || | |||| || | | |||||||| |
|
|
| T |
12267479 |
agcaacaccattagagttcttgacaccaacaatatccattccagttaaccggccaccacaattctttccatgcatcaccgtttgcttctccgccacggta |
12267380 |
T |
|
| Q |
296 |
accgatcttttctccggcataaccaccctcacaccaaaatgaataactccattttgcctcccttcccagttcctcaatttataactcaaaatccgggaac |
395 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||||||| | |||| |
|
|
| T |
12267379 |
accgatctttcctccggcacaaccaccctcacactaaaatgaataaccccattttgcctcccttcccaatccctcaatttataactcaaaatttgcgaac |
12267280 |
T |
|
| Q |
396 |
aattttcc |
403 |
Q |
| |
|
|||||||| |
|
|
| T |
12267279 |
aattttcc |
12267272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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