View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20175_high_18 (Length: 350)
Name: NF20175_high_18
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20175_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 335
Target Start/End: Original strand, 13309448 - 13309774
Alignment:
| Q |
9 |
caagaatatgattaaacacagcgtctgttggacaataaaaatcgggggttgactctgtttgggcattggataccctgcctcggggaagctcgcagcgttg |
108 |
Q |
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| T |
13309448 |
caagaaaatgattaaacacagcgtctgttggacaataaaaatcgggggttgactctgtttgggcattggataccctgcctcggggaagctcgcagcgttg |
13309547 |
T |
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| Q |
109 |
agcacccgtacaagcactcgtatgagaaccgggtacatttccgggcggtctgaaactatgttttgagctgttttctcatgtgttatttcatatttattac |
208 |
Q |
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| T |
13309548 |
agcacccgtacaagcactcgtatgagaaccgggtacatttccgggcggtctgaaactatgtttggagctgttttctcatgtgttatttcatatttattac |
13309647 |
T |
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| Q |
209 |
ttaactgaaagtgaacaaacaaatctctagtatnnnnnnntttgatttcaaatgacagtaactctaggtcaaaggttacttttcatgggtgaagtggtgt |
308 |
Q |
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| T |
13309648 |
ttaactgaaagtgaacaaacaaatctctagtataaaaaaatttgatttcaaatgacagtaactctaggtgaaaggttacttttcatgggtgaagtggtgt |
13309747 |
T |
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| Q |
309 |
ttatatcatgtgttataaatacatggt |
335 |
Q |
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| T |
13309748 |
ttatatcatgtgttataaatacatggt |
13309774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 13311414 - 13311462
Alignment:
| Q |
188 |
gtgttatttcatatttattacttaactgaaagtgaacaaacaaatctct |
236 |
Q |
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| T |
13311414 |
gtgttatttcattgttattacttaaccggaagtgaagaaacaaatctct |
13311462 |
T |
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