View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20175_high_19 (Length: 336)
Name: NF20175_high_19
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20175_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 165 - 320
Target Start/End: Complemental strand, 3924102 - 3923948
Alignment:
| Q |
165 |
ataagtttcagattctcaggagtcacgaaaccacacaccaaacacaagtacgtgatatggaccattgaaccaagatcagatagcaatgcattgaccgtta |
264 |
Q |
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| T |
3924102 |
ataagtttcagattctcaggagtcacgaaaccacacgccaaacacaagtacgtgatatggaccattgaaccaagatcagatagcaatgcatggaccgtta |
3924003 |
T |
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| Q |
265 |
gtcaggaaaatcacacattaaaccaattacatgataatacatggaccgttaaatct |
320 |
Q |
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| T |
3924002 |
gtcagg-aaatcacacattaaaccaattacatgataatacatggaccgttaaatct |
3923948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 3907808 - 3907678
Alignment:
| Q |
1 |
tgattccaattgctattttcatccttgttggccattcgatgatgatttctggtccacgagctgcaa--atatgtgtagaaatatcaatattagatgtatt |
98 |
Q |
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| T |
3907808 |
tgattccaatagctattttcatccttgttggccattcgacgacaatttcaggtccacgagctgcaaatatatgtgcagaaatatcaatatcagatgtatt |
3907709 |
T |
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| Q |
99 |
gacttataaattgggagatgaaatatttgtt |
129 |
Q |
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| T |
3907708 |
aacttataaattaggagatgaaatatttgtt |
3907678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 272 - 319
Target Start/End: Complemental strand, 3907577 - 3907530
Alignment:
| Q |
272 |
aaatcacacattaaaccaattacatgataatacatggaccgttaaatc |
319 |
Q |
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| T |
3907577 |
aaatcacacattaaaccaattacatgataatacatggaccgttaaatc |
3907530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 3907652 - 3907602
Alignment:
| Q |
113 |
gagatgaaatatttgttaactaataagattagctatgcattctaatttcaa |
163 |
Q |
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| T |
3907652 |
gagatgaaatatttgttaactaataagactagctatgcattctaatttcaa |
3907602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 157
Target Start/End: Complemental strand, 3923365 - 3923288
Alignment:
| Q |
79 |
atatcaatattagatgtattgacttataaattgggagatgaaatatttgttaactaataagattagctatgcattctaa |
157 |
Q |
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| T |
3923365 |
atatcaatatcagaagtattggcttataaattaagagataaaagacttattaactaata-gattagcaatgcattctaa |
3923288 |
T |
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