View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20175_high_26 (Length: 270)
Name: NF20175_high_26
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20175_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 48 - 261
Target Start/End: Complemental strand, 49918206 - 49917993
Alignment:
| Q |
48 |
aacatgtgttacgctcactctatnnnnnnngaaacataccccatctgttgctaagatgataaattgatccccagtggtaagttttctatgtgtcacatct |
147 |
Q |
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| T |
49918206 |
aacatgtgttacgctcactctataaaaaaagaaacataccccatctgttgctaagatgataaattgatccccagtggtaagttttctatgtgtcacatct |
49918107 |
T |
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| Q |
148 |
ggcactgagattagaccatagtccttcatacaatagtcaccaaaggctctagatattgctaatcctggtgttttaccatttggcatccacaccctataca |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49918106 |
ggcactgagattagaccatagtccttcatacaatagtcaccaaaggctctagatattgctaatcctggtgttttaccatttggcatccacaccctataca |
49918007 |
T |
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| Q |
248 |
ctcctggttcatct |
261 |
Q |
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|||||||||||||| |
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| T |
49918006 |
ctcctggttcatct |
49917993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 82 - 261
Target Start/End: Original strand, 13734418 - 13734597
Alignment:
| Q |
82 |
cataccccatctgttgctaagatgataaattgatccccagtggtaagttttctatgtgtcacatctggcactgagattagaccatagtccttcatacaat |
181 |
Q |
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||||||||||||||||||||||||| |||||||||| ||| || |||||||| |||||||||||||| ||||||||||| ||| |||| || | ||||| |
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| T |
13734418 |
cataccccatctgttgctaagatgacaaattgatccatagtagtgagttttctttgtgtcacatctggtactgagattagtccaaagtcttttacacaat |
13734517 |
T |
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| Q |
182 |
agtcaccaaaggctctagatattgctaatcctggtgttttaccatttggcatccacaccctatacactcctggttcatct |
261 |
Q |
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| T |
13734518 |
aatcaccaaatgctcttgatattgctagtcctggactcttaccatttggcatccaaactctatatactcctggttcatct |
13734597 |
T |
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