View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20175_high_28 (Length: 264)

Name: NF20175_high_28
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20175_high_28
NF20175_high_28
[»] chr4 (9 HSPs)
chr4 (13-259)||(36296508-36296754)
chr4 (13-259)||(35097701-35097947)
chr4 (13-259)||(35072735-35072981)
chr4 (13-259)||(35106879-35107125)
chr4 (59-259)||(35098036-35098236)
chr4 (17-260)||(36940529-36940772)
chr4 (65-223)||(36961300-36961458)
chr4 (201-253)||(36935918-36935971)
chr4 (36-112)||(36935979-36936055)
[»] chr6 (2 HSPs)
chr6 (13-259)||(24014234-24014480)
chr6 (13-259)||(24040791-24041037)
[»] chr1 (1 HSPs)
chr1 (14-146)||(3123093-3123225)
[»] chr5 (3 HSPs)
chr5 (171-259)||(34919135-34919223)
chr5 (15-241)||(26578978-26579204)
chr5 (36-84)||(34919000-34919048)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 259
Target Start/End: Complemental strand, 36296754 - 36296508
Alignment:
Q  13 cagaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagag 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36296754 cagaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcagattagtggagagag 36296655  T
Q  113 gaacgttgagaaagaagacaagaacaatcaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatg 212  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36296654 gaacgttgagaaagaagacaagaacaaccaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatg 36296555  T
Q  213 gatcaggtgaaagctgcaatggagaatggggttctcactgtcactgt 259  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||    
T  36296554 gatcaggtgaaagctgcaatggagaatggtgttctcactgtaactgt 36296508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 259
Target Start/End: Original strand, 35097701 - 35097947
Alignment:
Q  13 cagaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagag 112  Q
    |||||||||| |||||  | ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||| ||| || ||||||||    
T  35097701 cagaagcacatgtgttcgaggctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaaggtgatagggttcttcagataagcggagagag 35097800  T
Q  113 gaacgttgagaaagaagacaagaacaatcaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatg 212  Q
    ||| |||||||||||||| |||||| ||||||||||||| ||||||||||||||||| || || |||||||||||||||||||| || ||||| || |||    
T  35097801 gaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcgaaaatg 35097900  T
Q  213 gatcaggtgaaagctgcaatggagaatggggttctcactgtcactgt 259  Q
    || || ||||||||||||||||||||||| ||||||||||| |||||    
T  35097901 gaccaagtgaaagctgcaatggagaatggtgttctcactgttactgt 35097947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 13 - 259
Target Start/End: Complemental strand, 35072981 - 35072735
Alignment:
Q  13 cagaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagag 112  Q
    ||||||| || ||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||| ||| || || |||||    
T  35072981 cagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagag 35072882  T
Q  113 gaacgttgagaaagaagacaagaacaatcaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatg 212  Q
    |||| |||| |||||||| |||||  ||||||||||||| |||||||||||||||||||| || ||||||||||| ||||  || || ||||| || |||    
T  35072881 gaacattgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagataaccagagaatgcgaaaatg 35072782  T
Q  213 gatcaggtgaaagctgcaatggagaatggggttctcactgtcactgt 259  Q
    ||||| ||||||||||||||||||||||| ||||||||||| |||||    
T  35072781 gatcaagtgaaagctgcaatggagaatggtgttctcactgttactgt 35072735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 13 - 259
Target Start/End: Original strand, 35106879 - 35107125
Alignment:
Q  13 cagaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagag 112  Q
    ||||||| || ||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||| ||| || || |||||    
T  35106879 cagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagag 35106978  T
Q  113 gaacgttgagaaagaagacaagaacaatcaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatg 212  Q
    |||| |||| |||||||| |||||  ||||||||||||| |||||||||||||||||||| || ||||||||||| ||||| || || ||||| || |||    
T  35106979 gaactttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatg 35107078  T
Q  213 gatcaggtgaaagctgcaatggagaatggggttctcactgtcactgt 259  Q
    ||||| ||||||||||| ||||||||||| |||||| ||||||||||    
T  35107079 gatcaagtgaaagctgctatggagaatggtgttctcgctgtcactgt 35107125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 59 - 259
Target Start/End: Original strand, 35098036 - 35098236
Alignment:
Q  59 agaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagaggaacgttgagaaagaagacaagaacaatcaatggcatcgcgtggag 158  Q
    ||||||||||||||||||||||| ||| || ||||||| ||| || ||||||||||| |||||||||||||| |||||| ||||||||||||| ||||||    
T  35098036 agaagtgaaggttgaaattgaaggtgatagggttcttcagataagcggagagaggaatgttgagaaagaagataagaacgatcaatggcatcgtgtggag 35098135  T
Q  159 cgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatggatcaggtgaaagctgcaatggagaatggggttctcactgtcactg 258  Q
    ||||||||||| || || |||||||||||||||||||| || ||||| || ||||| || ||||||||||||||||||||||| ||||||||||| ||||    
T  35098136 cgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactg 35098235  T
Q  259 t 259  Q
    |    
T  35098236 t 35098236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 36940772 - 36940529
Alignment:
Q  17 agcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagaggaac 116  Q
    |||||||||||| || |||||| |||| ||| |||||||||| |||| ||| || || ||||||||||| || ||||||| ||| |||||| | || | |    
T  36940772 agcacacgtgttcaatgctgattttccaggaatgaagaaggaggaagcgaaagtagagattgaagatgatagggttcttcagataagtggaaaaagaagc 36940673  T
Q  117 gttgagaaagaagacaagaacaatcaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatggatc 216  Q
    |||||||||||||| |||||| |||||||||||| |||||||||||||||||| ||||| |||||||| || |||||||| || ||||| || |||||||    
T  36940672 gttgagaaagaagataagaacgatcaatggcatcccgtggagcgtagcagtgggaagttcatgaggagattaagattgcctgagaatgctaaaatggatc 36940573  T
Q  217 aggtgaaagctgcaatggagaatggggttctcactgtcactgtg 260  Q
    |  ||||||||||||||||||||||  |||||||||||||||||    
T  36940572 aaatgaaagctgcaatggagaatggcattctcactgtcactgtg 36940529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 65 - 223
Target Start/End: Original strand, 36961300 - 36961458
Alignment:
Q  65 gaaggttgaaattgaagatgacagagttcttcggattagtggagagaggaacgttgagaaagaagacaagaacaatcaatggcatcgcgtggagcgtagc 164  Q
    |||||| || ||||||| ||| || ||||||| ||| || |||||||| | ||||||||||||||| ||||||||| |||||||| ||||||||| ||||    
T  36961300 gaaggtagagattgaagttgatagggttcttcagatcagcggagagagaagcgttgagaaagaagataagaacaatgaatggcattgcgtggagcttagc 36961399  T
Q  165 agtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatggatcaggtgaa 223  Q
    ||||| || || ||||||| ||| |||||| | || ||||| |||||||||||||||||    
T  36961400 agtgggaaattcatgaggaagtttagattggcagagaatgctaagatggatcaggtgaa 36961458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 36935971 - 36935918
Alignment:
Q  201 aatgccaagatggatcaggtgaaagctgcaa-tggagaatggggttctcactgt 253  Q
    ||||| || |||||||| ||||||||||||| |||||||||| |||||||||||    
T  36935971 aatgctaaaatggatcaagtgaaagctgcaattggagaatggtgttctcactgt 36935918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 36936055 - 36935979
Alignment:
Q  36 gatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagag 112  Q
    |||||||| ||| |||||||||| |||||||| || || ||||||||||| |  ||||||| ||| || ||||||||    
T  36936055 gatcttccaggaatgaagaaggaggaagtgaaagtagagattgaagatgatatggttcttcagataagcggagagag 36935979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 13 - 259
Target Start/End: Complemental strand, 24014480 - 24014234
Alignment:
Q  13 cagaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagag 112  Q
    |||||||||| ||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| ||| || ||||||| ||| || ||||||||    
T  24014480 cagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaaggtgatagggttcttcagataagcggagagag 24014381  T
Q  113 gaacgttgagaaagaagacaagaacaatcaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatg 212  Q
    ||| |||||||||||||| |||||| ||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| |||||||||||||| || |||    
T  24014380 gaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgcagcagcggaaagttcatgaggagattcaggttgcccgaaaatgcgaaaatg 24014281  T
Q  213 gatcaggtgaaagctgcaatggagaatggggttctcactgtcactgt 259  Q
    ||||| ||||||||||||||||||||||| ||||||||||| |||||    
T  24014280 gatcaagtgaaagctgcaatggagaatggtgttctcactgttactgt 24014234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 259
Target Start/End: Complemental strand, 24041037 - 24040791
Alignment:
Q  13 cagaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagag 112  Q
    |||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| || || |||||    
T  24041037 cagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagag 24040938  T
Q  113 gaacgttgagaaagaagacaagaacaatcaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatg 212  Q
    ||||||||| |||||||| |||||  ||||||||||||| |||||||||||||||||||| || ||||||||||| ||||| || || ||||| || |||    
T  24040937 gaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatg 24040838  T
Q  213 gatcaggtgaaagctgcaatggagaatggggttctcactgtcactgt 259  Q
    ||||| |||||||||||||||||||||||  ||||||||||||||||    
T  24040837 gatcaagtgaaagctgcaatggagaatggtattctcactgtcactgt 24040791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 14 - 146
Target Start/End: Original strand, 3123093 - 3123225
Alignment:
Q  14 agaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagagg 113  Q
    ||||||||| ||||| |||||||||||||| ||  ||||||||||||| ||||||||||||||||||||||| |  ||||||| ||| || ||||| |||    
T  3123093 agaagcacatgtgttcaaagctgatcttccagggttgaagaaggaagaggtgaaggttgaaattgaagatgataaggttcttcagataagcggagaaagg 3123192  T
Q  114 aacgttgagaaagaagacaagaacaatcaatgg 146  Q
    | |||||||||||||||||||||| ||| ||||    
T  3123193 accgttgagaaagaagacaagaacgatcgatgg 3123225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 34919135 - 34919223
Alignment:
Q  171 aagtttatgaggaggttcagattgcccgaaaatgccaagatggatcaggtgaaagctgcaatggagaatggggttctcactgtcactgt 259  Q
    ||||||||||||||||| || ||||| || ||||  || ||||||||||| |||||||  ||||||||||||||||| ||||| |||||    
T  34919135 aagtttatgaggaggtttaggttgcctgagaatgttaaaatggatcaggttaaagctggtatggagaatggggttcttactgttactgt 34919223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 241
Target Start/End: Original strand, 26578978 - 26579204
Alignment:
Q  15 gaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcggattagtggagagagga 114  Q
    ||||||||| | || ||||| |||||||| ||  |||||||||| |||||||||||||| |||||||| ||  | ||| |   ||| |||||||||||||    
T  26578978 gaagcacacatcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagaggatcgtgttttgaagataagtggagagagga 26579077  T
Q  115 acgttgagaaagaagacaagaacaatcaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatgga 214  Q
    |  ||||||| |||||||||||  ||   ||||||||||| || || |||   ||||  ||| |  || |||| || ||||| || ||||| ||| ||||    
T  26579078 aaattgagaaggaagacaagaatgatacctggcatcgcgttgaacgaagccagggaagttttctccggcggtttaggttgccggagaatgctaaggtgga 26579177  T
Q  215 tcaggtgaaagctgcaatggagaatgg 241  Q
    | ||||||||||||  |||||||||||    
T  26579178 tgaggtgaaagctgggatggagaatgg 26579204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 34919000 - 34919048
Alignment:
Q  36 gatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatg 84  Q
    |||||||||||  ||||||| ||||||||||| |||||||| |||||||    
T  34919000 gatcttcctggtttgaagaaagaagaagtgaaagttgaaatagaagatg 34919048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University