View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20175_high_30 (Length: 258)
Name: NF20175_high_30
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20175_high_30 |
 | |
|
| [»] scaffold0268 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 25025283 - 25025052
Alignment:
| Q |
11 |
cagagagcttctgttatgaatggtggtgctgattattgctttactttggatgaggatttttagattaagaagaaattagggtgtatttatctactaaact |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25025283 |
cagaaagcttctgttatgaatggtggtgctgattattgctttactttggatgaggatttttagattaagaagaaattagggtgtatctatctactaaact |
25025184 |
T |
|
| Q |
111 |
tgtttaattaattctttagggttatgtttatgtgtttctgtcataatttaaatggttaagttgttctgtctcttagttttatcttcttaatgtttcatgt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25025183 |
tgtttaattaattctttagggttatgtttatgtgtttctgtcataatttaaatggttaagttgttctgtctcttagttttatcttcttaatgtttcatgt |
25025084 |
T |
|
| Q |
211 |
ataaattctgtttcaaagtttaatgaaatttt |
242 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |
|
|
| T |
25025083 |
ataaattttgtttcaaagtttaatgaaatttt |
25025052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 148
Target Start/End: Original strand, 42307978 - 42308115
Alignment:
| Q |
11 |
cagagagcttctgttatgaatggtggtgctgattattgctttactttggatgaggatttttagattaagaagaaattagggtgtatttatctactaaact |
110 |
Q |
| |
|
|||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||| ||||| || |
|
|
| T |
42307978 |
cagaaagcttatgttataaatggtggtgctgattattgctttactttggatgaggatttttagattatgaagaaattagggtttatctatccactaatct |
42308077 |
T |
|
| Q |
111 |
tgtttaattaattctttagggttatgtttatgtgtttc |
148 |
Q |
| |
|
|||||||||||| |||||| ||||||||| ||||||| |
|
|
| T |
42308078 |
cgtttaattaattttttaggattatgtttaagtgtttc |
42308115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 42314005 - 42314075
Alignment:
| Q |
156 |
atttaaatggttaagttgttctgtctcttagttttatcttcttaatgtttcatgtataaattctgtttcaa |
226 |
Q |
| |
|
|||| |||||| ||||| || || ||||||||||||| ||||||||||||||||||||||| | ||||||| |
|
|
| T |
42314005 |
attttaatggtaaagttcttgtgcctcttagttttattttcttaatgtttcatgtataaatgcagtttcaa |
42314075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 682858 - 683085
Alignment:
| Q |
11 |
cagagagcttctgttatgaatggtggtgctgattattgctttactttggatgaggatttttagattaagaagaaattagggtgtatttatctactaaact |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||| |||| ||||| | |
|
|
| T |
682858 |
cagaaagcttctgttatgaatggtggtgctgattattgttttactttggatgaggatttttagattatgaagaaattagggtttatctatccactaatgt |
682957 |
T |
|
| Q |
111 |
tgtttaattaattctttagggttatgtttatgtgtttctgtcataatttaaatggttaagttgttctgtctcttagttttatcttcttaatgtttcatgt |
210 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||| |||| |||||||||||| || || ||||| ||||||| ||||||||| ||||||| |
|
|
| T |
682958 |
cgtttaattaattttttagggttatgtttatgtgtttttgttgccattttaatggttaagttcttgtgcctcttggttttattttcttaatg-ttcatgt |
683056 |
T |
|
| Q |
211 |
ataaattctgtttcaaagtttaatgaaattt |
241 |
Q |
| |
|
|||||| | ||||| ||||||||||||||| |
|
|
| T |
683057 |
ataaatgcagtttc--agtttaatgaaattt |
683085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0268 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 23329 - 23394
Alignment:
| Q |
28 |
gaatggtggtgctgattattgctttactttggatgaggatttttagattaag-aagaaattagggt |
92 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||| ||||||||||| | | ||||||||||||| |
|
|
| T |
23329 |
gaatggtgctgctgatttttgctttagtttggatgaagatttttagatcatgaaagaaattagggt |
23394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 10196759 - 10196694
Alignment:
| Q |
28 |
gaatggtggtgctgattattgctttactttggatgaggatttttagattaag-aagaaattagggt |
92 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||| ||||||||||| | | ||||||||||||| |
|
|
| T |
10196759 |
gaatggtgctgctgatttttgctttagtttggatgaagatttttagatcatgaaagaaattagggt |
10196694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 19457841 - 19457905
Alignment:
| Q |
29 |
aatggtggtgctgattattgctttactttggatgaggatttttagattaag-aagaaattagggt |
92 |
Q |
| |
|
||||||| |||||||| |||||| | |||||||| ||||||||||| ||| ||||||||||||| |
|
|
| T |
19457841 |
aatggtgctgctgatttttgcttcaagttggatgaagatttttagatcaagaaagaaattagggt |
19457905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University