View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20175_high_33 (Length: 244)
Name: NF20175_high_33
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20175_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 3335815 - 3335586
Alignment:
| Q |
1 |
cattacaagtctaccgtatatatctgataaaaccctagcaactgaactaaaactgtaacattggttgtctggatagcagttcaattactttgaactatag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3335815 |
cattacaagtctaccgtatatatctgataaaaccctaggaactgaactaaaactgtaacattggttgtctggatagcagttcaattactttgaactatag |
3335716 |
T |
|
| Q |
101 |
ctgaaaagagtagtttgttgagatctccagaatcagaatcttgtggttcatttcctgcatcaaaacaaatttacagggacagttattttctgcatttcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3335715 |
ctgaaaagagtagtttgttgagatctccagaatcagaatcttgtggttcatttcctgcatcaaaacaaatttacagggacagttattttctgcatttcta |
3335616 |
T |
|
| Q |
201 |
aattctagaaatgatatacaagggaaaagg |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
3335615 |
aattctagaaatgatatacaagggaaaagg |
3335586 |
T |
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