View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20175_high_6 (Length: 557)

Name: NF20175_high_6
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20175_high_6
NF20175_high_6
[»] chr4 (38 HSPs)
chr4 (308-541)||(55270909-55271142)
chr4 (19-95)||(17619122-17619198)
chr4 (21-139)||(36004088-36004204)
chr4 (19-95)||(55272346-55272422)
chr4 (19-140)||(711959-712090)
chr4 (19-95)||(38851567-38851643)
chr4 (21-145)||(32728351-32728485)
chr4 (19-95)||(19880008-19880084)
chr4 (19-95)||(35037059-35037135)
chr4 (19-95)||(48435549-48435625)
chr4 (19-85)||(46827676-46827742)
chr4 (19-95)||(960840-960916)
chr4 (104-144)||(3756311-3756351)
chr4 (55-95)||(48463456-48463496)
chr4 (105-140)||(960936-960971)
chr4 (105-140)||(46827772-46827807)
chr4 (104-147)||(49229729-49229772)
chr4 (140-174)||(55271280-55271314)
chr4 (50-95)||(27893843-27893888)
chr4 (50-95)||(31680956-31681001)
chr4 (50-95)||(33703195-33703240)
chr4 (50-95)||(39631155-39631200)
chr4 (50-95)||(43949802-43949847)
chr4 (55-95)||(27864618-27864658)
chr4 (104-140)||(28988472-28988508)
chr4 (104-139)||(17619217-17619252)
chr4 (50-93)||(35017788-35017831)
chr4 (105-148)||(55272442-55272485)
chr4 (61-95)||(55966358-55966392)
chr4 (50-95)||(23036034-23036079)
chr4 (50-95)||(25051747-25051792)
chr4 (50-95)||(27550363-27550408)
chr4 (62-95)||(28982835-28982868)
chr4 (50-95)||(41878460-41878505)
chr4 (50-95)||(45490314-45490359)
chr4 (104-140)||(1771331-1771367)
chr4 (50-86)||(41327544-41327580)
chr4 (51-95)||(56215899-56215943)
[»] chr8 (29 HSPs)
chr8 (19-140)||(10678122-10678241)
chr8 (19-144)||(18066688-18066823)
chr8 (19-140)||(35181515-35181646)
chr8 (19-88)||(16358803-16358872)
chr8 (19-95)||(34304842-34304918)
chr8 (19-86)||(16603596-16603663)
chr8 (19-85)||(19386535-19386601)
chr8 (19-95)||(33629963-33630039)
chr8 (104-140)||(19386635-19386671)
chr8 (50-95)||(5754957-5755002)
chr8 (50-95)||(11582820-11582865)
chr8 (104-141)||(16603691-16603728)
chr8 (50-95)||(26125689-26125734)
chr8 (50-95)||(29800951-29800996)
chr8 (50-95)||(36743484-36743529)
chr8 (50-95)||(42197436-42197481)
chr8 (50-95)||(42295249-42295294)
chr8 (55-95)||(20148814-20148854)
chr8 (104-140)||(34304787-34304823)
chr8 (50-139)||(9241564-9241651)
chr8 (50-95)||(1375596-1375641)
chr8 (50-95)||(2547050-2547095)
chr8 (50-95)||(29705416-29705461)
chr8 (50-95)||(30660743-30660788)
chr8 (50-95)||(31384718-31384763)
chr8 (50-95)||(32328818-32328863)
chr8 (104-137)||(33630058-33630091)
chr8 (50-95)||(40528635-40528680)
chr8 (104-144)||(42197500-42197540)
[»] chr1 (29 HSPs)
chr1 (19-95)||(46168437-46168513)
chr1 (19-139)||(38335918-38336048)
chr1 (19-139)||(48119628-48119758)
chr1 (19-95)||(35003348-35003424)
chr1 (18-95)||(45639701-45639778)
chr1 (19-145)||(44112671-44112807)
chr1 (19-95)||(35000083-35000159)
chr1 (19-95)||(45427715-45427791)
chr1 (19-95)||(45705879-45705955)
chr1 (19-95)||(26585516-26585592)
chr1 (19-144)||(41065148-41065281)
chr1 (19-86)||(38113165-38113232)
chr1 (104-140)||(14427346-14427382)
chr1 (104-144)||(35003289-35003329)
chr1 (55-139)||(4888055-4888137)
chr1 (104-142)||(38113260-38113298)
chr1 (50-95)||(5489830-5489875)
chr1 (50-95)||(23989524-23989569)
chr1 (50-95)||(43571087-43571132)
chr1 (106-143)||(45705821-45705858)
chr1 (50-95)||(48498963-48499008)
chr1 (108-139)||(46168383-46168414)
chr1 (105-139)||(35000179-35000213)
chr1 (106-140)||(45639799-45639833)
chr1 (50-95)||(4401382-4401427)
chr1 (50-95)||(37814832-37814877)
chr1 (104-145)||(43571151-43571192)
chr1 (104-141)||(45427810-45427847)
chr1 (55-95)||(2497568-2497608)
[»] scaffold0003 (1 HSPs)
scaffold0003 (19-137)||(45689-45817)
[»] chr7 (31 HSPs)
chr7 (19-95)||(31513341-31513417)
chr7 (19-138)||(31408603-31408732)
chr7 (21-95)||(33384925-33384999)
chr7 (19-95)||(40236973-40237049)
chr7 (19-86)||(27535201-27535268)
chr7 (105-140)||(27535297-27535332)
chr7 (106-140)||(40236918-40236952)
chr7 (50-95)||(4638200-4638245)
chr7 (50-95)||(5015449-5015494)
chr7 (50-95)||(10573803-10573848)
chr7 (50-95)||(24001013-24001058)
chr7 (50-95)||(32029818-32029863)
chr7 (50-95)||(35069775-35069820)
chr7 (50-95)||(42538432-42538477)
chr7 (104-144)||(5194296-5194336)
chr7 (104-140)||(41861673-41861709)
chr7 (55-95)||(44326232-44326272)
chr7 (104-139)||(31513287-31513322)
chr7 (50-88)||(16180358-16180396)
chr7 (50-88)||(24280597-24280635)
chr7 (61-95)||(42972906-42972940)
chr7 (50-95)||(5810925-5810970)
chr7 (104-141)||(24280661-24280698)
chr7 (50-95)||(27393261-27393306)
chr7 (104-141)||(43317441-43317478)
chr7 (50-95)||(43343625-43343670)
chr7 (50-95)||(44416935-44416980)
chr7 (50-95)||(45326074-45326119)
chr7 (55-95)||(26898408-26898448)
chr7 (104-140)||(33384869-33384905)
chr7 (50-94)||(43317498-43317542)
[»] chr6 (21 HSPs)
chr6 (19-95)||(27441596-27441672)
chr6 (19-95)||(33242457-33242533)
chr6 (19-95)||(33253967-33254044)
chr6 (19-93)||(31109192-31109266)
chr6 (50-95)||(21279983-21280028)
chr6 (106-141)||(31109289-31109324)
chr6 (50-95)||(3213454-3213499)
chr6 (50-95)||(7292801-7292846)
chr6 (50-95)||(9698334-9698379)
chr6 (50-95)||(13743222-13743267)
chr6 (50-95)||(13748722-13748767)
chr6 (50-95)||(26670010-26670055)
chr6 (104-137)||(27441544-27441577)
chr6 (50-95)||(30014397-30014442)
chr6 (55-95)||(7367603-7367643)
chr6 (55-95)||(24203993-24204033)
chr6 (104-140)||(33242402-33242438)
chr6 (50-95)||(21293678-21293723)
chr6 (50-95)||(26466853-26466898)
chr6 (104-140)||(7273400-7273436)
chr6 (104-140)||(26670074-26670110)
[»] chr2 (29 HSPs)
chr2 (19-95)||(4451920-4451996)
chr2 (23-140)||(43114556-43114683)
chr2 (19-85)||(12531633-12531699)
chr2 (19-137)||(11825624-11825752)
chr2 (18-141)||(18491703-18491836)
chr2 (19-95)||(34895711-34895787)
chr2 (19-137)||(41281944-41282072)
chr2 (19-85)||(966804-966870)
chr2 (19-139)||(12415430-12415560)
chr2 (19-139)||(12427490-12427620)
chr2 (19-86)||(4299390-4299457)
chr2 (19-140)||(16803967-16804098)
chr2 (19-140)||(16843249-16843380)
chr2 (19-89)||(14285736-14285806)
chr2 (55-139)||(42849864-42849946)
chr2 (50-95)||(13780736-13780781)
chr2 (104-140)||(966899-966935)
chr2 (50-95)||(19047211-19047256)
chr2 (50-95)||(30838686-30838731)
chr2 (50-86)||(34817777-34817813)
chr2 (50-88)||(4764727-4764765)
chr2 (53-95)||(42026823-42026865)
chr2 (50-95)||(1750468-1750513)
chr2 (104-137)||(4299485-4299518)
chr2 (50-95)||(12302254-12302299)
chr2 (50-95)||(43335764-43335809)
chr2 (50-95)||(43490402-43490447)
chr2 (53-93)||(8896587-8896627)
chr2 (104-144)||(14285671-14285711)
[»] chr3 (29 HSPs)
chr3 (19-140)||(4190235-4190366)
chr3 (19-95)||(10457862-10457938)
chr3 (19-139)||(34791829-34791959)
chr3 (19-95)||(9434178-9434254)
chr3 (19-95)||(25996322-25996398)
chr3 (19-88)||(52627947-52628016)
chr3 (19-95)||(51757647-51757723)
chr3 (49-95)||(53273684-53273730)
chr3 (106-143)||(25996264-25996301)
chr3 (50-95)||(51249362-51249407)
chr3 (105-140)||(9434123-9434158)
chr3 (50-95)||(24688403-24688448)
chr3 (50-95)||(27748617-27748662)
chr3 (50-95)||(40480803-40480848)
chr3 (50-95)||(40808919-40808964)
chr3 (50-95)||(42394420-42394465)
chr3 (50-95)||(46941107-46941152)
chr3 (50-95)||(54237150-54237195)
chr3 (104-140)||(10457957-10457993)
chr3 (55-95)||(45126934-45126974)
chr3 (50-92)||(36150187-36150229)
chr3 (61-95)||(42100742-42100776)
chr3 (106-140)||(52628044-52628078)
chr3 (50-139)||(52629840-52629927)
chr3 (104-141)||(25413679-25413716)
chr3 (50-95)||(25413735-25413780)
chr3 (50-95)||(53581859-53581904)
chr3 (104-140)||(47191090-47191126)
chr3 (104-140)||(54246213-54246249)
[»] chr5 (16 HSPs)
chr5 (19-139)||(32473364-32473494)
chr5 (19-95)||(17208128-17208204)
chr5 (19-140)||(30622689-30622819)
chr5 (50-95)||(2614650-2614695)
chr5 (50-95)||(5257049-5257094)
chr5 (50-95)||(7617187-7617232)
chr5 (50-95)||(22512359-22512404)
chr5 (50-95)||(41334664-41334709)
chr5 (105-141)||(17208072-17208108)
chr5 (334-365)||(7042886-7042917)
chr5 (105-140)||(7617132-7617167)
chr5 (105-148)||(18033973-18034016)
chr5 (104-139)||(41334728-41334763)
chr5 (50-95)||(18034036-18034081)
chr5 (50-95)||(33801523-33801568)
chr5 (50-95)||(39122434-39122479)
[»] scaffold0100 (2 HSPs)
scaffold0100 (19-95)||(35426-35502)
scaffold0100 (102-139)||(35519-35556)
[»] scaffold0385 (1 HSPs)
scaffold0385 (50-95)||(11305-11350)
[»] scaffold0119 (2 HSPs)
scaffold0119 (50-95)||(739-784)
scaffold0119 (104-140)||(684-720)
[»] scaffold0038 (1 HSPs)
scaffold0038 (50-95)||(112709-112754)
[»] scaffold0187 (2 HSPs)
scaffold0187 (50-95)||(14189-14234)
scaffold0187 (50-95)||(24517-24562)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 6e-97; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 308 - 541
Target Start/End: Complemental strand, 55271142 - 55270909
Alignment:
Q  308 caaagaatctagtgacgaaacagtttcacactaagtgcaaagaagtggagaattgcggattagaacttgcttcccaacatatcaaacatccctccagcct 407  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  55271142 caaagaatctagtgacgaaacagtttcacactaagtgcagagaagtggagaattgcggattagaatttgcttcccaacatatcaaacatccctccagcct 55271043  T
Q  408 gaactgtacttatgggnnnnnnntgagtgtttttagtcnnnnnnntaggactaaaattgaacaaaatttatgtaagactaaacttgaaaatttgtcttat 507  Q
    |||| |||||||||||       |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55271042 gaaccgtacttatgggacaaaaatgagtgtttttagtcaagaaaataggactaaaattgaacaaaatttatgtaagactaaacttgaaaatttgtcttat 55270943  T
Q  508 tttattttgttaacttagttatgcggaattaggt 541  Q
    ||||||||||||||||||||||||||||||||||    
T  55270942 tttattttgttaacttagttatgcggaattaggt 55270909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 17619122 - 17619198
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17619122 acatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaat 17619198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 36004088 - 36004204
Alignment:
Q  21 atgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaatcctgacat--ggtgtatgattaaag 118  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||    | ||  |||||||||||||||    
T  36004088 atgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagataaatttatcaaaatgtccctaat----atatggggtgtatgattaaag 36004183  T
Q  119 ggtgttcatgtaacattttcc 139  Q
    ||| |||||||||||||||||    
T  36004184 ggtattcatgtaacattttcc 36004204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 55272346 - 55272422
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  55272346 acatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaat 55272422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 712090 - 711959
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaatcc------tg----acatggtgt 108  Q
    |||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |      ||    | | |||||    
T  712090 acatgtggcaaggaaaaggaagaggagatgaaagagaaagtatgtttgtgagatgaatttaccaaaatatccttaatgcatagggtgtacaatagggtgt 711991  T
Q  109 atgattaaagggtgttcatgtaacattttcct 140  Q
    ||||||||||||||||||||||||||||||||    
T  711990 atgattaaagggtgttcatgtaacattttcct 711959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 38851643 - 38851567
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||    
T  38851643 acatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttatcaaaatgtccataat 38851567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 32728485 - 32728351
Alignment:
Q  21 atgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat-cctg---------acatggtgtat 110  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| |||| | ||         | | |||||||    
T  32728485 atgtggcaaggaaaagggagaggagatgaaagagaaagtatgattgtgagatgaatttactaaaatgtccttaatgcatggggtgtacaatagggtgtat 32728386  T
Q  111 gattaaagggtgttcatgtaacattttcctaaaat 145  Q
    ||||||||| |||||||||||||||||||||||||    
T  32728385 gattaaaggatgttcatgtaacattttcctaaaat 32728351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 19880084 - 19880008
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||    
T  19880084 acatgtggcaaggaaaagggaaaggagatgaaagagaaagtatgattgtgagatgaatttaccaaaatgtccataat 19880008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 35037135 - 35037059
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||| ||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  35037135 acatgtggcaaggaaaagggagaggagaagaaagaaaaaatatggttgtgagatgaatttaccaaaatatccttaat 35037059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 48435549 - 48435625
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||    
T  48435549 acatgtggcaaggaaaagggagaggagatgaaagataaagtatgattgtgagatgaatttaccaatatgtccctaat 48435625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 46827676 - 46827742
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaa 85  Q
    |||||||||||||||||||||| |||||||||||||||| |||| ||||||||| ||||||||||||    
T  46827676 acatgtggcaagaaaaagggaggggagatgaaagagaaaatatgtttgtgagataaatttaccaaaa 46827742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 960840 - 960916
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||| |||||||| |||||||||||||||||||| | || | |||||||||||||||||| ||||||||    
T  960840 acatgtggcaaggaaaagggataggagatgaaagagaaagtacgattataagatgaatttaccaaaatgtccctaat 960916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 3756311 - 3756351
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcctaaaa 144  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  3756311 ggtgtatgattaaagggtgttcatgtaacatttttctaaaa 3756351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 48463456 - 48463496
Alignment:
Q  55 aaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  48463456 aaagtatggttgtgagatgaacttaccaaaatatccctaat 48463496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 960936 - 960971
Alignment:
Q  105 gtgtatgattaaagggtgttcatgtaacattttcct 140  Q
    ||||||||||||||||||||||||||||||||||||    
T  960936 gtgtatgattaaagggtgttcatgtaacattttcct 960971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 46827772 - 46827807
Alignment:
Q  105 gtgtatgattaaagggtgttcatgtaacattttcct 140  Q
    ||||||||||||||||||||||||||||||||||||    
T  46827772 gtgtatgattaaagggtgttcatgtaacattttcct 46827807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 147
Target Start/End: Original strand, 49229729 - 49229772
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcctaaaatta 147  Q
    |||||||||||||||| ||||||| |||||||||||||||||||    
T  49229729 ggtgtatgattaaaggatgttcatataacattttcctaaaatta 49229772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 174
Target Start/End: Complemental strand, 55271314 - 55271280
Alignment:
Q  140 taaaattatgatggtttaagcttagttcctatgca 174  Q
    |||||||||||||||||||||||||||||||||||    
T  55271314 taaaattatgatggtttaagcttagttcctatgca 55271280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 27893843 - 27893888
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  27893843 aagataaagtgtggttgtgagatgaaattaccaaaatatccctaat 27893888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 31681001 - 31680956
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  31681001 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 31680956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 33703240 - 33703195
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  33703240 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 33703195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 39631200 - 39631155
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  39631200 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 39631155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 43949802 - 43949847
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  43949802 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 43949847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 27864658 - 27864618
Alignment:
Q  55 aaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  27864658 aaagtgtggttgtgagatgaacttaccaaaatatccctaat 27864618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 28988508 - 28988472
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcct 140  Q
    ||||||||| |||||||||||||||||||||||||||    
T  28988508 ggtgtatgaataaagggtgttcatgtaacattttcct 28988472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 17619217 - 17619252
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcc 139  Q
    |||||||||||||| |||||||||||||||||||||    
T  17619217 ggtgtatgattaaaaggtgttcatgtaacattttcc 17619252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 35017831 - 35017788
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatcccta 93  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||    
T  35017831 aagataaagtgtggttgtgagatgaacttaccaaaatatcccta 35017788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 55272442 - 55272485
Alignment:
Q  105 gtgtatgattaaagggtgttcatgtaacattttcctaaaattat 148  Q
    ||||||||||||||| ||||||||||||||||||| | ||||||    
T  55272442 gtgtatgattaaaggatgttcatgtaacattttccaataattat 55272485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 61 - 95
Target Start/End: Original strand, 55966358 - 55966392
Alignment:
Q  61 tggttgtgagatgaatttaccaaaatatccctaat 95  Q
    ||||||||||||||| |||||||||||||||||||    
T  55966358 tggttgtgagatgaacttaccaaaatatccctaat 55966392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 23036079 - 23036034
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||| ||||||||||||||    
T  23036079 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaat 23036034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 25051792 - 25051747
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| || |||||||||||| |||||||||||||||||||    
T  25051792 aagataaagtgtgattgtgagatgaacttaccaaaatatccctaat 25051747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 27550408 - 27550363
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||| ||||||| |||||||||||||||||||    
T  27550408 aagataaagtgtggttgtaagatgaacttaccaaaatatccctaat 27550363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 95
Target Start/End: Original strand, 28982835 - 28982868
Alignment:
Q  62 ggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||||| |||||||||||||||||||    
T  28982835 ggttgtgagatgaacttaccaaaatatccctaat 28982868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 41878505 - 41878460
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    ||||||| || ||||||||||||||| ||| |||||||||||||||    
T  41878505 aagagaaggtttggttgtgagatgaacttatcaaaatatccctaat 41878460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 45490314 - 45490359
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| |||||||||||||||||||| ||| ||||||||||    
T  45490314 aagataaagtgtggttgtgagatgaatttactaaagtatccctaat 45490359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 1771331 - 1771367
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcct 140  Q
    |||||| || |||||||||||||||||||||||||||    
T  1771331 ggtgtaggaataaagggtgttcatgtaacattttcct 1771367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 41327544 - 41327580
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaat 86  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  41327544 aagagaaagtgtggatgtgagatgaatttaccaaaat 41327580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 56215899 - 56215943
Alignment:
Q  51 agagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    ||||||||| |||||||||||| ||||| |||||||||| |||||    
T  56215899 agagaaagtgtggttgtgagataaattttccaaaatatcgctaat 56215943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 7e-35; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 10678122 - 10678241
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaatcctgacat--ggtgtatgattaa 116  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    | ||  |||||||||||||    
T  10678122 acatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaat----atatggggtgtatgattaa 10678217  T
Q  117 agggtgttcatgtaacattttcct 140  Q
    ||||| ||||||||||||||||||    
T  10678218 agggtattcatgtaacattttcct 10678241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 18066688 - 18066823
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat-cctgacatg---------gtgt 108  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | ||  |||          |||    
T  18066688 acatgtggcaaggaaaatggagaggagatgaaagagaaagtatggttgtgagatgaaattactaaaatatccctaatacatgggatgtacaatagaatgt 18066787  T
Q  109 atgattaaagggtgttcatgtaacattttcctaaaa 144  Q
    ||||||||||||||||||||||||||||||||||||    
T  18066788 atgattaaagggtgttcatgtaacattttcctaaaa 18066823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 35181646 - 35181515
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat-cctg---------acatggtgt 108  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| | ||         | | |||||    
T  35181646 acatgtggcaaggaaaagtgagaggagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgt 35181547  T
Q  109 atgattaaagggtgttcatgtaacattttcct 140  Q
    ||||||||||||||||||||||||||||||||    
T  35181546 atgattaaagggtgttcatgtaacattttcct 35181515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 16358803 - 16358872
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatat 88  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  16358803 acatgtggcaagaaaaagggagaggagatgaaaaagaaagtatggttgtgagatgaatttatcaaaatat 16358872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 34304918 - 34304842
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  34304918 acatgtggcaaggaaaagtgagaggagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaat 34304842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 16603596 - 16603663
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaat 86  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16603596 acatgtggcaaggaaaagggagaggagatgaaagagtaagtatggttgtgagatgaatttaccaaaat 16603663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 19386535 - 19386601
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaa 85  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  19386535 acatgtggcaaggaaaagggagaggagatgaaagagaaagtatagttgtgagatgaatttatcaaaa 19386601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 33629963 - 33630039
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||  |||||||||||||||||||||||||||||| ||||||||||||| |||| ||||| ||||||||    
T  33629963 acatgtggcaaagaaaagggagaggagatgaaagagaaagtatagttgtgagatgaaattactaaaatgtccctaat 33630039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 19386635 - 19386671
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcct 140  Q
    |||||||||||||||||||||||||||||||||||||    
T  19386635 ggtgtatgattaaagggtgttcatgtaacattttcct 19386671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 5755002 - 5754957
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  5755002 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 5754957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 11582865 - 11582820
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  11582865 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 11582820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 16603691 - 16603728
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttccta 141  Q
    |||||||||||||||||||| |||||||||||||||||    
T  16603691 ggtgtatgattaaagggtgtgcatgtaacattttccta 16603728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 26125734 - 26125689
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  26125734 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 26125689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 29800951 - 29800996
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  29800951 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 29800996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 36743484 - 36743529
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  36743484 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 36743529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 42197436 - 42197481
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  42197436 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 42197481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 42295294 - 42295249
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  42295294 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 42295249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 20148854 - 20148814
Alignment:
Q  55 aaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  20148854 aaagtgtggttgtgagatgaacttaccaaaatatccctaat 20148814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 34304823 - 34304787
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcct 140  Q
    |||||||||||||||| ||||||||||||||||||||    
T  34304823 ggtgtatgattaaaggatgttcatgtaacattttcct 34304787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 139
Target Start/End: Complemental strand, 9241651 - 9241564
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaatcctgacatggtgtatgattaaagggtgttcatgtaacattttcc 139  Q
    |||| ||||| ||||||||||||||| |||| ||||||||||||||    | | |||||| || ||||||  ||||||||||||||||||    
T  9241651 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaat--atatagggtgtaggaataaaggaggttcatgtaacattttcc 9241564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 1375641 - 1375596
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| | |||||||||| ||||||||||||||||||||||    
T  1375641 aagataaagtgtagttgtgagataaatttaccaaaatatccctaat 1375596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 2547095 - 2547050
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||| ||||||||||||||    
T  2547095 aagataaagtgtggttgtgagatgaacttactaaaatatccctaat 2547050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 29705461 - 29705416
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| ||| |||||||||||||||    
T  29705461 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaat 29705416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 30660743 - 30660788
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||| ||||||| |||||||||||||||||||    
T  30660743 aagataaagtgtggttgtaagatgaacttaccaaaatatccctaat 30660788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 31384763 - 31384718
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||| ||||||    
T  31384763 aagataaagtgtggttgtgagatgaacttaccaaaatattcctaat 31384718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 32328818 - 32328863
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||| |||||||||| || |||||||||||| ||||||    
T  32328818 aagagaaagtatagttgtgagataaacttaccaaaatattcctaat 32328863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 137
Target Start/End: Original strand, 33630058 - 33630091
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacatttt 137  Q
    |||||||||||||||||||||| |||||||||||    
T  33630058 ggtgtatgattaaagggtgttcgtgtaacatttt 33630091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 40528635 - 40528680
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||| |||||||||||| |||||| |||||| ||||||||    
T  40528635 aagagaaagtgtggttgtgagataaatttatcaaaatgtccctaat 40528680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 42197500 - 42197540
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcctaaaa 144  Q
    |||||| || |||| ||||||||||||||||||||||||||    
T  42197500 ggtgtaggaataaatggtgttcatgtaacattttcctaaaa 42197540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 46168513 - 46168437
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46168513 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaat 46168437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 38336048 - 38335918
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat-cctg---------acatggtgt 108  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||         | | |||||    
T  38336048 acatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatgggatgtacaataaggtgt 38335949  T
Q  109 atgattaaagggtgttcatgtaacattttcc 139  Q
    |||||||||||||||||||||||||||||||    
T  38335948 atgattaaagggtgttcatgtaacattttcc 38335918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 48119758 - 48119628
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat-cctg---------acatggtgt 108  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||         | | |||||    
T  48119758 acatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagggtgt 48119659  T
Q  109 atgattaaagggtgttcatgtaacattttcc 139  Q
    |||||||||||||||||||||||||||||||    
T  48119658 atgattaaagggtgttcatgtaacattttcc 48119628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 35003424 - 35003348
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35003424 acatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaat 35003348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 45639701 - 45639778
Alignment:
Q  18 aacatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  45639701 aacatgtggcaaggaaaagggagaggagatgaaagagaaagtatgattgtgagatgaatttaccaaaatatccttaat 45639778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 44112807 - 44112671
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat-cctg---------acatggtgt 108  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| | ||         | | |||||    
T  44112807 acatgtggcaaggaaaagtgagaggagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgt 44112708  T
Q  109 atgattaaagggtgttcatgtaacattttcctaaaat 145  Q
    |||||||||||||||||||||||||||||||| ||||    
T  44112707 atgattaaagggtgttcatgtaacattttccttaaat 44112671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 35000083 - 35000159
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||    
T  35000083 acatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagataaatttatcaaaatgtccctaat 35000159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 45427715 - 45427791
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  45427715 acatgtggtaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaat 45427791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 45705955 - 45705879
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||    
T  45705955 acatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttatcaaaatgtccataat 45705879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 26585592 - 26585516
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| ||||    
T  26585592 acatgtggcaaggaaaagggagaggagatgaaagagaaagtatgattgcgagatgaatttactaaaatatccttaat 26585516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 41065281 - 41065148
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat-cctg---------acatggtgt 108  Q
    |||||||||||| |||||||||  |||| |||||||||||||||||||||||||||| ||||||||||  ||||||| | ||         ||| |||||    
T  41065281 acatgtggcaaggaaaagggag--gagaggaaagagaaagtatggttgtgagatgaaattaccaaaatgcccctaatgcatggggtgtacaacagggtgt 41065184  T
Q  109 atgattaaagggtgttcatgtaacattttcctaaaa 144  Q
    ||||||||||||||||||||||||||||||||||||    
T  41065183 atgattaaagggtgttcatgtaacattttcctaaaa 41065148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 38113165 - 38113232
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaat 86  Q
    |||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  38113165 acatgtggcaaagaaaagggagaggagatgaaagagtaagtatggttgtgagatgaatttaccaaaat 38113232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 14427382 - 14427346
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcct 140  Q
    |||||||||||||||||||||||||||||||||||||    
T  14427382 ggtgtatgattaaagggtgttcatgtaacattttcct 14427346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 35003329 - 35003289
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcctaaaa 144  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  35003329 ggtgtatgattaaagggtgttcatgtaacattttccaaaaa 35003289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 4888137 - 4888055
Alignment:
Q  55 aaagtatggttgtgagatgaatttaccaaaatatccctaatcctgacatgg--tgtatgattaaagggtgttcatgtaacattttcc 139  Q
    ||||| |||||||||||| || |||||||||||||||||||    ||||||  |||| || ||||||| ||||||||||||||||||    
T  4888137 aaagtgtggttgtgagataaacttaccaaaatatccctaat----acatgggatgtaggaataaagggcgttcatgtaacattttcc 4888055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 38113260 - 38113298
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcctaa 142  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  38113260 ggtgtatgattaaagggtgttcatataacattttcctaa 38113298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 5489875 - 5489830
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  5489875 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 5489830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 23989524 - 23989569
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| |||||||||||| ||||||||||||||||||||||    
T  23989524 aagataaagtgtggttgtgagataaatttaccaaaatatccctaat 23989569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 43571087 - 43571132
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  43571087 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 43571132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 45705858 - 45705821
Alignment:
Q  106 tgtatgattaaagggtgttcatgtaacattttcctaaa 143  Q
    |||||||||||||||||||||| |||||||||||||||    
T  45705858 tgtatgattaaagggtgttcatataacattttcctaaa 45705821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 48498963 - 48499008
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  48498963 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 48499008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 139
Target Start/End: Complemental strand, 46168414 - 46168383
Alignment:
Q  108 tatgattaaagggtgttcatgtaacattttcc 139  Q
    ||||||||||||||||||||||||||||||||    
T  46168414 tatgattaaagggtgttcatgtaacattttcc 46168383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 139
Target Start/End: Original strand, 35000179 - 35000213
Alignment:
Q  105 gtgtatgattaaagggtgttcatgtaacattttcc 139  Q
    ||||||||||||| |||||||||||||||||||||    
T  35000179 gtgtatgattaaaaggtgttcatgtaacattttcc 35000213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 45639799 - 45639833
Alignment:
Q  106 tgtatgattaaagggtgttcatgtaacattttcct 140  Q
    ||||||||||||| |||||||||||||||||||||    
T  45639799 tgtatgattaaagagtgttcatgtaacattttcct 45639833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 4401427 - 4401382
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| ||||||||||||| |||||    
T  4401427 aagataaagtgtggttgtgagatgaacttaccaaaatatctctaat 4401382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 37814877 - 37814832
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||| |||||||||||||||||||| ||||    
T  37814877 aagataaagtgtggttgtgaaatgaatttaccaaaatatccttaat 37814832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 43571151 - 43571192
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcctaaaat 145  Q
    |||||| || |||||||||||||||||||||||||| |||||    
T  43571151 ggtgtaggaataaagggtgttcatgtaacattttccaaaaat 43571192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 45427810 - 45427847
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttccta 141  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  45427810 ggtgtatgattaaaaggtattcatgtaacattttccta 45427847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 2497568 - 2497608
Alignment:
Q  55 aaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    ||||| ||||||||||||||| |||||||||||||| ||||    
T  2497568 aaagtgtggttgtgagatgaacttaccaaaatatccttaat 2497608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 45689 - 45817
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaatcc------tg----acatggtgt 108  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |      ||    | | |||||    
T  45689 acatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgt 45788  T
Q  109 atgattaaagggtgttcatgtaacatttt 137  Q
    |||||||||||||||||||||||||||||    
T  45789 atgattaaagggtgttcatgtaacatttt 45817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 31513417 - 31513341
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31513417 acatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaat 31513341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 31408603 - 31408732
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat-cctgacatg---------gtgt 108  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | ||  |||         ||||    
T  31408603 acatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgaaatgaatttaccaaaatatccttaatgcatgggatgtacaatagagtgt 31408702  T
Q  109 atgattaaagggtgttcatgtaacattttc 138  Q
    ||||||||||||||||||||||||||||||    
T  31408703 atgattaaagggtgttcatgtaacattttc 31408732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 33384999 - 33384925
Alignment:
Q  21 atgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  33384999 atgtggcaaggaaaagggagaggagatgaaagagaaagtatgtttgtgagatgaatttaccaaaatgtccctaat 33384925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 40237049 - 40236973
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||    
T  40237049 acatgtggcaaggaaaagtgagaggagatgaaagagaaaatatggttgtgagatgaaattaccaaaatgtccctaat 40236973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 27535201 - 27535268
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaat 86  Q
    |||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  27535201 acatgtggcaaggaaaaaggagaggagatgaaagagaaagtatagttgtgagatgaaattaccaaaat 27535268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 27535297 - 27535332
Alignment:
Q  105 gtgtatgattaaagggtgttcatgtaacattttcct 140  Q
    ||||||||||||||||||||||||||||||||||||    
T  27535297 gtgtatgattaaagggtgttcatgtaacattttcct 27535332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 140
Target Start/End: Complemental strand, 40236952 - 40236918
Alignment:
Q  106 tgtatgattaaagggtgttcatgtaacattttcct 140  Q
    |||||||||||||||||||||||||||||||||||    
T  40236952 tgtatgattaaagggtgttcatgtaacattttcct 40236918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 4638200 - 4638245
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||||||||||||||||||| |||||||||||||| ||||    
T  4638200 aagataaagtatggttgtgagatgaacttaccaaaatatccataat 4638245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 5015494 - 5015449
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  5015494 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 5015449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 10573848 - 10573803
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| |||||||||||||||||||||||||||| ||||||    
T  10573848 aagataaagtgtggttgtgagatgaatttaccaaaatattcctaat 10573803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 24001013 - 24001058
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  24001013 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 24001058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 32029818 - 32029863
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||| |||||||||||||||||||||||||||    
T  32029818 aagataaagtgtggttgttagatgaatttaccaaaatatccctaat 32029863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 35069820 - 35069775
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  35069820 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 35069775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 42538432 - 42538477
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  42538432 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 42538477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 5194296 - 5194336
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcctaaaa 144  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  5194296 ggtgtatgaataaatggtgttcatgtaacattttcctaaaa 5194336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 41861709 - 41861673
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcct 140  Q
    ||||||||| |||||||||||||||||||||||||||    
T  41861709 ggtgtatgaataaagggtgttcatgtaacattttcct 41861673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 44326272 - 44326232
Alignment:
Q  55 aaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  44326272 aaagtgtggttgtgagatgaacttaccaaaatatccctaat 44326232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 139
Target Start/End: Complemental strand, 31513322 - 31513287
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcc 139  Q
    ||||||||||||||| ||||||||||||||||||||    
T  31513322 ggtgtatgattaaagagtgttcatgtaacattttcc 31513287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 88
Target Start/End: Original strand, 16180358 - 16180396
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatat 88  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  16180358 aagataaagtgtggttgtgagatgaatttaccaaaatat 16180396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 88
Target Start/End: Original strand, 24280597 - 24280635
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatat 88  Q
    |||||||||| || |||||||||||||||||||||||||    
T  24280597 aagagaaagtgtgattgtgagatgaatttaccaaaatat 24280635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 61 - 95
Target Start/End: Complemental strand, 42972940 - 42972906
Alignment:
Q  61 tggttgtgagatgaatttaccaaaatatccctaat 95  Q
    ||||||||||||||| |||||||||||||||||||    
T  42972940 tggttgtgagatgaacttaccaaaatatccctaat 42972906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 5810925 - 5810970
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| ||| |||||||||||||||    
T  5810925 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaat 5810970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 24280661 - 24280698
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttccta 141  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  24280661 ggtgtatgaataaagggtgttcacgtaacattttccta 24280698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 27393261 - 27393306
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||| ||||||||||||||    
T  27393261 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaat 27393306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 43317478 - 43317441
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttccta 141  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  43317478 ggtgtatgaataaatggtgttcatgtaacattttccta 43317441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 43343625 - 43343670
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| ||| |||||||||||||||    
T  43343625 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaat 43343670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 44416935 - 44416980
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| ||| |||||||||||||||    
T  44416935 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaat 44416980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 45326119 - 45326074
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| || |||||||||||| |||||||||||||||||||    
T  45326119 aagataaagtgtgattgtgagatgaacttaccaaaatatccctaat 45326074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 26898408 - 26898448
Alignment:
Q  55 aaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    ||||| ||||||| ||||||| |||||||||||||||||||    
T  26898408 aaagtgtggttgtaagatgaacttaccaaaatatccctaat 26898448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 33384905 - 33384869
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcct 140  Q
    |||||||||||||| | ||||||||||||||||||||    
T  33384905 ggtgtatgattaaatgatgttcatgtaacattttcct 33384869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 43317542 - 43317498
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaa 94  Q
    ||||| |||| || |||||||||||||||| ||||||||||||||    
T  43317542 aagagtaagtgtgattgtgagatgaatttatcaaaatatccctaa 43317498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 27441672 - 27441596
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27441672 acatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaat 27441596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 33242533 - 33242457
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||    
T  33242533 acatgtggcaaggaaaagggagaggagatgaaagagaaagtatgtttgtgagatgaatttaccaaaatgtccttaat 33242457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 33254044 - 33253967
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaa-gagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||  |||||||||||||||||||| || |||||||| |||||||||||||||||||| || ||||||||    
T  33254044 acatgtggcaaagaaaagggagaggagatgaaaagataaagtatgattgtgagatgaatttaccaatatgtccctaat 33253967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 31109192 - 31109266
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatcccta 93  Q
    |||||||||||| || ||||||||||||||||||||||| | |||| || || |||||||| |||||||||||||    
T  31109192 acatgtggcaaggaagagggagaggagatgaaagagaaaatgtggtcgtaagttgaatttatcaaaatatcccta 31109266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 21280028 - 21279983
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||    
T  21280028 aagataaagtgtggttgtgagatgaatttaccaaaatatccctaat 21279983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 106 - 141
Target Start/End: Original strand, 31109289 - 31109324
Alignment:
Q  106 tgtatgattaaagggtgttcatgtaacattttccta 141  Q
    ||||||||||||||||||||||||||||||||||||    
T  31109289 tgtatgattaaagggtgttcatgtaacattttccta 31109324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 3213499 - 3213454
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||||||||||||| |||||||||||||||||||| ||||    
T  3213499 aagataaagtatggttgtgaaatgaatttaccaaaatatccttaat 3213454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 7292846 - 7292801
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  7292846 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 7292801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 9698334 - 9698379
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  9698334 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 9698379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 13743222 - 13743267
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  13743222 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 13743267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 13748722 - 13748767
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  13748722 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 13748767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 26670010 - 26670055
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  26670010 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 26670055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 27441577 - 27441544
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacatttt 137  Q
    ||||||||||||||||||||||||||||||||||    
T  27441577 ggtgtatgattaaagggtgttcatgtaacatttt 27441544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 30014442 - 30014397
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||||||||||||||||||| |||||||||||| ||||||    
T  30014442 aagataaagtatggttgtgagatgaacttaccaaaatatgcctaat 30014397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 7367643 - 7367603
Alignment:
Q  55 aaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  7367643 aaagtgtggttgtgagatgaacttaccaaaatatccctaat 7367603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 24203993 - 24204033
Alignment:
Q  55 aaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  24203993 aaagtgtggttgtgagatgaacttaccaaaatatccctaat 24204033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 33242438 - 33242402
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcct 140  Q
    |||||||||||||| ||||||||||||||||||||||    
T  33242438 ggtgtatgattaaatggtgttcatgtaacattttcct 33242402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 21293678 - 21293723
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||| |||||||||||||||||||| ||||    
T  21293678 aagataaagtgtggttgtgaaatgaatttaccaaaatatccttaat 21293723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 26466898 - 26466853
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| ||||||||||| |||||||    
T  26466898 aagataaagtgtggttgtgagatgaacttaccaaaataaccctaat 26466853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 7273400 - 7273436
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcct 140  Q
    |||||| || |||||||||||||||||||||||||||    
T  7273400 ggtgtaggaataaagggtgttcatgtaacattttcct 7273436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 26670074 - 26670110
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcct 140  Q
    |||||| || |||||||||||||||||||||||||||    
T  26670074 ggtgtaggaataaagggtgttcatgtaacattttcct 26670110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 4451920 - 4451996
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4451920 acatgtgggaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 4451996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 23 - 140
Target Start/End: Complemental strand, 43114683 - 43114556
Alignment:
Q  23 gtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat-cctg---------acatggtgtatga 112  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| | ||         | | |||||||||    
T  43114683 gtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatga 43114584  T
Q  113 ttaaagggtgttcatgtaacattttcct 140  Q
    ||||||||||||||||||||||||||||    
T  43114583 ttaaagggtgttcatgtaacattttcct 43114556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 12531633 - 12531699
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaa 85  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12531633 acatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaa 12531699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 11825624 - 11825752
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaatcc------tg----acatggtgt 108  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||| |      ||    | | |||||    
T  11825624 acatgtggcaaggaaaagggagaggagatgaaagagaaagtatgattgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgt 11825723  T
Q  109 atgattaaagggtgttcatgtaacatttt 137  Q
    |||||||||||||||||||||||||||||    
T  11825724 atgattaaagggtgttcatgtaacatttt 11825752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 18491836 - 18491703
Alignment:
Q  18 aacatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat-cctg---------acatggtg 107  Q
    ||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| | | |||| | ||         | | ||||    
T  18491836 aacatgtggcaaggaaaagggataggagatgaaagagtaagtatggttgtgagatgaatttaccaaaatgttcttaatgcatgaggtgtacaatagggtg 18491737  T
Q  108 tatgattaaagggtgttcatgtaacattttccta 141  Q
    ||||||||||||||||||||||||||||||||||    
T  18491736 tatgattaaagggtgttcatgtaacattttccta 18491703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 34895711 - 34895787
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||    
T  34895711 acatgtggcaaggaaaagggagaggagatgaaagataaagtatgattgtgagatgaatttaccaatatgtccctaat 34895787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 41281944 - 41282072
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaatcc------tg----acatggtgt 108  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| |      ||    | | |||||    
T  41281944 acatgtggcaaggaaaagtgagaggagatgaaagagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatggggtgtacaatagggtgt 41282043  T
Q  109 atgattaaagggtgttcatgtaacatttt 137  Q
    |||||||||||||||||||||||||||||    
T  41282044 atgattaaagggtgttcatgtaacatttt 41282072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 966804 - 966870
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaa 85  Q
    |||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  966804 acatgtggcaaggaaaagggaggggagatgaaagagaaagtatgtttgtgagatgaatttaccaaaa 966870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 12415430 - 12415560
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat-cctg---------acatggtgt 108  Q
    |||||| ||||  ||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||| | ||         | | |||||    
T  12415430 acatgtagcaaagaaaagggagaggagatgaaagagaaagtatggttgtgagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgt 12415529  T
Q  109 atgattaaagggtgttcatgtaacattttcc 139  Q
    |||||||||||||||||||||||||||||||    
T  12415530 atgattaaagggtgttcatgtaacattttcc 12415560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 12427490 - 12427620
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat-cctg---------acatggtgt 108  Q
    |||||| ||||  ||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||| | ||         | | |||||    
T  12427490 acatgtagcaaagaaaagggagaggagatgaaagagaaagtatggttgtgagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgt 12427589  T
Q  109 atgattaaagggtgttcatgtaacattttcc 139  Q
    |||||||||||||||||||||||||||||||    
T  12427590 atgattaaagggtgttcatgtaacattttcc 12427620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 4299390 - 4299457
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaat 86  Q
    |||||||||||| |||||||||||||||| |||||| ||||||| |||||||||||||||||||||||    
T  4299390 acatgtggcaaggaaaagggagaggagattaaagagtaagtatgattgtgagatgaatttaccaaaat 4299457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 16804098 - 16803967
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat-cctg---------acatggtgt 108  Q
    |||||||||||| ||||| | || ||||||||||||||||||||||||||||||||| ||| |||||| |||||||| | ||         | | |||||    
T  16804098 acatgtggcaaggaaaagtgtgaagagatgaaagagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgt 16803999  T
Q  109 atgattaaagggtgttcatgtaacattttcct 140  Q
    ||||||||||||||||||||||||||||||||    
T  16803998 atgattaaagggtgttcatgtaacattttcct 16803967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 16843380 - 16843249
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat-cctg---------acatggtgt 108  Q
    |||||||||||| ||||| | || ||||||||||||||||||||||||||||||||| ||| |||||| |||||||| | ||         | | |||||    
T  16843380 acatgtggcaaggaaaagtgtgaagagatgaaagagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgt 16843281  T
Q  109 atgattaaagggtgttcatgtaacattttcct 140  Q
    ||||||||||||||||||||||||||||||||    
T  16843280 atgattaaagggtgttcatgtaacattttcct 16843249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 14285806 - 14285736
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatc 89  Q
    |||||||| ||| |||||||||||||||||||||||||||||||  | |||||||||||||||||||||||    
T  14285806 acatgtggtaaggaaaagggagaggagatgaaagagaaagtatgactctgagatgaatttaccaaaatatc 14285736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 42849864 - 42849946
Alignment:
Q  55 aaagtatggttgtgagatgaatttaccaaaatatccctaatcctgacat--ggtgtatgattaaagggtgttcatgtaacattttcc 139  Q
    ||||| ||||||||||||||| ||| |||||||||||||||    ||||  |||||| || ||||||||||||||||||||||||||    
T  42849864 aaagtgtggttgtgagatgaacttatcaaaatatccctaat----acatggggtgtaggaataaagggtgttcatgtaacattttcc 42849946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 13780736 - 13780781
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||    
T  13780736 aagagaaagtgtggttgtgagatgaatttatcaaaatatccctaat 13780781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 966899 - 966935
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcct 140  Q
    |||||||||||||||||||||||||||||||||||||    
T  966899 ggtgtatgattaaagggtgttcatgtaacattttcct 966935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 19047256 - 19047211
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  19047256 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 19047211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 30838731 - 30838686
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  30838731 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 30838686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 34817777 - 34817813
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaat 86  Q
    |||||||||| ||||||||||||||||||||||||||    
T  34817777 aagagaaagtgtggttgtgagatgaatttaccaaaat 34817813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 88
Target Start/End: Original strand, 4764727 - 4764765
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatat 88  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  4764727 aagataaagtgtggttgtgagatgaatttaccaaaatat 4764765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 42026865 - 42026823
Alignment:
Q  53 agaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    ||||||| | |||||||||||||||| ||||||||||||||||    
T  42026865 agaaagtgtagttgtgagatgaatttgccaaaatatccctaat 42026823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 1750513 - 1750468
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||| ||||||||||||||    
T  1750513 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaat 1750468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 137
Target Start/End: Original strand, 4299485 - 4299518
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacatttt 137  Q
    |||||||||||||||||||||||| |||||||||    
T  4299485 ggtgtatgattaaagggtgttcatataacatttt 4299518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 12302254 - 12302299
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||| ||||||||||||||    
T  12302254 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaat 12302299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 43335764 - 43335809
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| | ||||||||||||| |||||||||||||||||||    
T  43335764 aagataaagtgtagttgtgagatgaacttaccaaaatatccctaat 43335809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 43490402 - 43490447
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||| ||||||||| |||||||||||||||||||    
T  43490402 aagataaagtgtggttatgagatgaacttaccaaaatatccctaat 43490447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 8896587 - 8896627
Alignment:
Q  53 agaaagtatggttgtgagatgaatttaccaaaatatcccta 93  Q
    ||||||| || ||||||||||||||||||||||||| ||||    
T  8896587 agaaagtgtgattgtgagatgaatttaccaaaatattccta 8896627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 14285711 - 14285671
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcctaaaa 144  Q
    |||||||||||||||||||||  ||||| ||||||||||||    
T  14285711 ggtgtatgattaaagggtgtttgtgtaatattttcctaaaa 14285671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 4190235 - 4190366
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaatcc------tg----acatggtgt 108  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |      ||    | | |||||    
T  4190235 acatgtggcaaggaaaagggaaaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatctctaatacataaggtgtacaatagggtgt 4190334  T
Q  109 atgattaaagggtgttcatgtaacattttcct 140  Q
    ||||||||||||||||||||||||||||||||    
T  4190335 atgattaaagggtgttcatgtaacattttcct 4190366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 10457862 - 10457938
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  10457862 acatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagataaatttaccaaaatatccttaat 10457938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 34791959 - 34791829
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat-cctg---------acatggtgt 108  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||  ||||| |||||||| | ||         | |||||||    
T  34791959 acatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaaattattaaaatgtccctaatgcatgaggtttacaatatggtgt 34791860  T
Q  109 atgattaaagggtgttcatgtaacattttcc 139  Q
    |||||||||||||||||||||||||||||||    
T  34791859 atgattaaagggtgttcatgtaacattttcc 34791829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 9434254 - 9434178
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  9434254 acatgtggcaaggaaaagtgagaggagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaat 9434178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 25996398 - 25996322
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||    
T  25996398 acatgtggcaaggaaaagggagaggagatgaaagagaaaatatggttgtgagatgaatttaccaaaatgtccttaat 25996322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 52627947 - 52628016
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatat 88  Q
    ||||||||| || ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  52627947 acatgtggccaggaaaagggagagaagatgaaagagaaagtatgattgtgagatgaatttaccaaaatat 52628016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 51757723 - 51757647
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||| ||||| ||| ||||    
T  51757723 acatgtggcaaggaaaaggaagaggagatgaaagagaaagtatggttgtgagatgaaattactaaaatgtccataat 51757647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 53273684 - 53273730
Alignment:
Q  49 aaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||    
T  53273684 aaagataaagtatggttgtgagatgaacttaccaaaatatccctaat 53273730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 25996301 - 25996264
Alignment:
Q  106 tgtatgattaaagggtgttcatgtaacattttcctaaa 143  Q
    ||||||||||||||||||||||||||||||||||||||    
T  25996301 tgtatgattaaagggtgttcatgtaacattttcctaaa 25996264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 51249407 - 51249362
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||    
T  51249407 aagagaaagtgtggttgtgagatgaatttaccaaaatatccttaat 51249362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 9434158 - 9434123
Alignment:
Q  105 gtgtatgattaaagggtgttcatgtaacattttcct 140  Q
    ||||||||||||||||||||||||||||||||||||    
T  9434158 gtgtatgattaaagggtgttcatgtaacattttcct 9434123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 24688403 - 24688448
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  24688403 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 24688448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 27748662 - 27748617
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||||| ||||||||||||| |||||||||||||||||||    
T  27748662 aagataaagtattgttgtgagatgaacttaccaaaatatccctaat 27748617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 40480848 - 40480803
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  40480848 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 40480803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 40808964 - 40808919
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  40808964 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 40808919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 42394420 - 42394465
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  42394420 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 42394465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 46941152 - 46941107
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  46941152 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 46941107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 54237195 - 54237150
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  54237195 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 54237150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 10457957 - 10457993
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcct 140  Q
    |||||||||||||| ||||||||||||||||||||||    
T  10457957 ggtgtatgattaaaaggtgttcatgtaacattttcct 10457993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 45126934 - 45126974
Alignment:
Q  55 aaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  45126934 aaagtgtggttgtgagatgaacttaccaaaatatccctaat 45126974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 36150229 - 36150187
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccct 92  Q
    |||| ||||| ||||||||||||||| ||||||||||||||||    
T  36150229 aagataaagtgtggttgtgagatgaacttaccaaaatatccct 36150187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 61 - 95
Target Start/End: Complemental strand, 42100776 - 42100742
Alignment:
Q  61 tggttgtgagatgaatttaccaaaatatccctaat 95  Q
    ||||||||||||||| |||||||||||||||||||    
T  42100776 tggttgtgagatgaacttaccaaaatatccctaat 42100742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 52628044 - 52628078
Alignment:
Q  106 tgtatgattaaagggtgttcatgtaacattttcct 140  Q
    ||||||||||||||||||||| |||||||||||||    
T  52628044 tgtatgattaaagggtgttcacgtaacattttcct 52628078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 139
Target Start/End: Complemental strand, 52629927 - 52629840
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaatcctgacatggtgtatgattaaagggtgttcatgtaacattttcc 139  Q
    |||| ||||| ||||||||||||||| |||| ||||||||| |||| |  | | |||||| || |||| ||||||||||||| |||||||    
T  52629927 aagataaagtgtggttgtgagatgaacttacaaaaatatccttaatac--atagggtgtaggaataaaaggtgttcatgtaatattttcc 52629840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 25413716 - 25413679
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttccta 141  Q
    |||||| || ||||||||||||||||||||||||||||    
T  25413716 ggtgtaggaataaagggtgttcatgtaacattttccta 25413679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 25413780 - 25413735
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||| ||||||||||||||    
T  25413780 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaat 25413735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 53581859 - 53581904
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| ||| |||||||||||||||    
T  53581859 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaat 53581904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 47191090 - 47191126
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcct 140  Q
    |||||| || |||||||||||||||||||||||||||    
T  47191090 ggtgtaggaataaagggtgttcatgtaacattttcct 47191126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 54246213 - 54246249
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcct 140  Q
    |||||| || |||||||||||||||||||||||||||    
T  54246213 ggtgtaggaataaagggtgttcatgtaacattttcct 54246249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 32473364 - 32473494
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat-cctg---------acatggtgt 108  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||         | | |||||    
T  32473364 acatgtggcaaagaaaagggagaggagatgaaagagaaagtatggttgtgagatgaaattaccaaaatatccctaatgcatgtggtgtacaataaggtgt 32473463  T
Q  109 atgattaaagggtgttcatgtaacattttcc 139  Q
    |||||||||||||||||||||||||||||||    
T  32473464 atgattaaagggtgttcatgtaacattttcc 32473494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 17208204 - 17208128
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  17208204 acatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaat 17208128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 30622689 - 30622819
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat-cctg--------acatggtgta 109  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| | ||        | | ||||||    
T  30622689 acatgtggcaaggaaaagagagaggagatgaaagagaaagtatggttgtgagataaatttaccaaaatatccttaatgcatgggcttacaatagggtgta 30622788  T
Q  110 tgattaaagggtgttcatgtaacattttcct 140  Q
    |||||||||| ||||||||||||||||||||    
T  30622789 tgattaaaggatgttcatgtaacattttcct 30622819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 2614650 - 2614695
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  2614650 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 2614695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 5257094 - 5257049
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  5257094 aagataaagtgtggttgtgagatgaaattaccaaaatatccctaat 5257049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 7617232 - 7617187
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  7617232 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 7617187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 22512404 - 22512359
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  22512404 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 22512359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 41334664 - 41334709
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  41334664 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 41334709  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 17208108 - 17208072
Alignment:
Q  105 gtgtatgattaaagggtgttcatgtaacattttccta 141  Q
    |||||||||||||||||||||| ||||||||||||||    
T  17208108 gtgtatgattaaagggtgttcacgtaacattttccta 17208072  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 365
Target Start/End: Complemental strand, 7042917 - 7042886
Alignment:
Q  334 cacactaagtgcaaagaagtggagaattgcgg 365  Q
    ||||||||||||||||||||||||||||||||    
T  7042917 cacactaagtgcaaagaagtggagaattgcgg 7042886  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 7617167 - 7617132
Alignment:
Q  105 gtgtatgattaaagggtgttcatgtaacattttcct 140  Q
    |||||||| |||||||||||||||||||||||||||    
T  7617167 gtgtatgaataaagggtgttcatgtaacattttcct 7617132  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 18034016 - 18033973
Alignment:
Q  105 gtgtatgattaaagggtgttcatgtaacattttcctaaaattat 148  Q
    ||||| || ||||||||||||||||||||||||||| |||||||    
T  18034016 gtgtaggaataaagggtgttcatgtaacattttccttaaattat 18033973  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 41334728 - 41334763
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcc 139  Q
    ||||||||| ||||||||||||||||||||||||||    
T  41334728 ggtgtatgaataaagggtgttcatgtaacattttcc 41334763  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 18034081 - 18034036
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||| ||||||||||||||    
T  18034081 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaat 18034036  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 33801568 - 33801523
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||| ||||||||||||||    
T  33801568 aagataaagtgtggttgtgagatgaacttactaaaatatccctaat 33801523  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 39122434 - 39122479
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| | |||||||||||||||||||||||||| ||||||    
T  39122434 aagataaagtgtagttgtgagatgaatttaccaaaatattcctaat 39122479  T

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Target: scaffold0100 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 35426 - 35502
Alignment:
Q  19 acatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  35426 acatgcggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaatttaccaatatgtccctaat 35502  T

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Target: scaffold0100; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 35519 - 35556
Alignment:
Q  102 atggtgtatgattaaagggtgttcatgtaacattttcc 139  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  35519 atggtgtatgattaaatggtgtttatgtaacattttcc 35556  T

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Target: scaffold0385 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 11350 - 11305
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  11350 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 11305  T

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Target: scaffold0119 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 784 - 739
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  784 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 739  T

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Target: scaffold0119; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 720 - 684
Alignment:
Q  104 ggtgtatgattaaagggtgttcatgtaacattttcct 140  Q
    |||||| || |||||||||||||||||||||||||||    
T  720 ggtgtaggaataaagggtgttcatgtaacattttcct 684  T

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Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 112754 - 112709
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||    
T  112754 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaat 112709  T

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Target: scaffold0187 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 14189 - 14234
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||| ||||||||||||||    
T  14189 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaat 14234  T

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Target: scaffold0187; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 24517 - 24562
Alignment:
Q  50 aagagaaagtatggttgtgagatgaatttaccaaaatatccctaat 95  Q
    |||| ||||| ||||||||||||||| |||| ||||||||||||||    
T  24517 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaat 24562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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