View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20175_high_9 (Length: 483)
Name: NF20175_high_9
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20175_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 117 - 477
Target Start/End: Original strand, 43814997 - 43815351
Alignment:
| Q |
117 |
agtttgttgtactgtatctcacagcaaaacacaaacattttcaaatggaaagcattggtgttctaatgacatatccaatgaacacaaacctcgaagaaca |
216 |
Q |
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| T |
43814997 |
agtttgttgtactgtatctcacagcaaaacacacacattttcaaatggaaagcattggtgttctaatgacatacccaatgaacacaaacctcgaagaaca |
43815096 |
T |
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| Q |
217 |
actttccaattccaaccgtttcaacctcttcaaactctggaactatccttccttccaatccttgtctgaaacccacgcaaattccattcgcgcattggtt |
316 |
Q |
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||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||| |
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| T |
43815097 |
actctcca------accgtttcaacctcttcaaactctggaactatccttccttccaatccttctcagaaacccacgcaaattcaattcgtgcattggtt |
43815190 |
T |
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| Q |
317 |
tgcagcaccaaaatcggagccgacgcaaacacaatcgattctcttcctaatcttgagattgtgtctacttacagcgttggatttgataaaattgatctga |
416 |
Q |
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|||| ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
43815191 |
tgcaacaccaaaatcggagcggatgcaaatacaatcgattctcttcctaatcttgagattgtttctacttacagtgttggatttgataaaattgatctga |
43815290 |
T |
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| Q |
417 |
agaattgcagagagaaaggaatttgggttacgaatacgccgaatgtattgactgatgatgt |
477 |
Q |
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|||| ||||| |||||||| ||||| ||||||||||||||| |||| |||||||||||||| |
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| T |
43815291 |
agaaatgcagggagaaagggatttgtgttacgaatacgccggatgtgttgactgatgatgt |
43815351 |
T |
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