View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20175_low_13 (Length: 441)

Name: NF20175_low_13
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20175_low_13
NF20175_low_13
[»] chr2 (20 HSPs)
chr2 (24-422)||(12904559-12904957)
chr2 (219-370)||(11992594-11992745)
chr2 (191-281)||(7292720-7292810)
chr2 (219-357)||(4807248-4807386)
chr2 (219-357)||(452110-452248)
chr2 (219-357)||(45368112-45368249)
chr2 (217-357)||(2610184-2610324)
chr2 (192-357)||(13148969-13149134)
chr2 (287-357)||(24584162-24584232)
chr2 (32-120)||(23714561-23714649)
chr2 (32-120)||(24102233-24102321)
chr2 (206-357)||(33594744-33594895)
chr2 (296-357)||(30743279-30743340)
chr2 (317-357)||(14769946-14769986)
chr2 (219-346)||(3244139-3244266)
chr2 (242-357)||(41763560-41763675)
chr2 (317-357)||(876788-876828)
chr2 (317-357)||(8180436-8180476)
chr2 (192-248)||(9460393-9460449)
chr2 (317-357)||(38453206-38453246)
[»] chr4 (17 HSPs)
chr4 (205-397)||(10775896-10776085)
chr4 (206-357)||(30807254-30807402)
chr4 (241-357)||(50286627-50286743)
chr4 (219-357)||(23906789-23906927)
chr4 (219-357)||(33226865-33227003)
chr4 (219-357)||(48174581-48174719)
chr4 (202-353)||(42037521-42037677)
chr4 (219-357)||(27450661-27450799)
chr4 (206-372)||(39754846-39755012)
chr4 (219-357)||(56374946-56375084)
chr4 (212-357)||(1211871-1212016)
chr4 (203-258)||(15183614-15183669)
chr4 (219-357)||(435885-436023)
chr4 (219-353)||(53707454-53707588)
chr4 (241-357)||(31960324-31960440)
chr4 (219-357)||(48623015-48623153)
chr4 (43-88)||(30853339-30853384)
[»] chr8 (17 HSPs)
chr8 (203-420)||(25985134-25985350)
chr8 (219-357)||(36565729-36565867)
chr8 (317-370)||(18849701-18849754)
chr8 (219-356)||(42854492-42854629)
chr8 (219-357)||(4032982-4033120)
chr8 (219-357)||(12492330-12492468)
chr8 (317-413)||(41444890-41444987)
chr8 (298-357)||(15215837-15215896)
chr8 (219-357)||(36544808-36544946)
chr8 (234-278)||(30748232-30748276)
chr8 (317-357)||(43732230-43732270)
chr8 (317-357)||(45332073-45332113)
chr8 (317-351)||(8880020-8880054)
chr8 (203-281)||(42493774-42493852)
chr8 (203-240)||(16351162-16351199)
chr8 (212-281)||(38328288-38328357)
chr8 (24-93)||(39051060-39051129)
[»] chr1 (21 HSPs)
chr1 (206-397)||(28528197-28528388)
chr1 (232-384)||(6640755-6640907)
chr1 (219-357)||(51601714-51601852)
chr1 (224-357)||(7921583-7921716)
chr1 (241-357)||(27445554-27445670)
chr1 (205-357)||(51234271-51234422)
chr1 (241-357)||(1210401-1210517)
chr1 (219-357)||(43240869-43241007)
chr1 (317-413)||(40419280-40419377)
chr1 (203-355)||(34827574-34827726)
chr1 (203-246)||(18793460-18793503)
chr1 (219-357)||(49347881-49348020)
chr1 (203-247)||(26016231-26016275)
chr1 (221-357)||(32083235-32083371)
chr1 (317-371)||(3877491-3877545)
chr1 (219-357)||(8671576-8671714)
chr1 (219-357)||(51441252-51441390)
chr1 (241-357)||(19936177-19936294)
chr1 (244-357)||(37463378-37463491)
chr1 (296-370)||(32066836-32066907)
chr1 (48-124)||(52442823-52442899)
[»] chr7 (21 HSPs)
chr7 (203-399)||(43793515-43793708)
chr7 (219-357)||(38606661-38606799)
chr7 (219-357)||(46356339-46356477)
chr7 (219-357)||(33350294-33350432)
chr7 (219-353)||(11593620-11593754)
chr7 (219-357)||(36651650-36651788)
chr7 (219-357)||(31004880-31005017)
chr7 (287-357)||(32630263-32630333)
chr7 (219-356)||(37616573-37616710)
chr7 (203-357)||(18637236-18637387)
chr7 (203-357)||(18650671-18650822)
chr7 (55-120)||(36514531-36514596)
chr7 (191-279)||(12965677-12965764)
chr7 (317-357)||(18608276-18608316)
chr7 (317-357)||(18626562-18626602)
chr7 (317-397)||(20499711-20499791)
chr7 (317-357)||(39906965-39907005)
chr7 (245-357)||(49028923-49029035)
chr7 (270-357)||(24177734-24177821)
chr7 (220-346)||(24550178-24550304)
chr7 (219-355)||(48919046-48919182)
[»] chr3 (22 HSPs)
chr3 (219-357)||(25191035-25191173)
chr3 (219-357)||(38849750-38849888)
chr3 (241-397)||(44395046-44395199)
chr3 (212-357)||(27917228-27917373)
chr3 (317-397)||(1448199-1448279)
chr3 (195-391)||(46145775-46145971)
chr3 (191-338)||(11581119-11581266)
chr3 (219-357)||(28245093-28245231)
chr3 (219-357)||(47542199-47542337)
chr3 (219-357)||(51448197-51448335)
chr3 (191-275)||(50632288-50632372)
chr3 (294-357)||(19757724-19757787)
chr3 (192-278)||(50632442-50632528)
chr3 (50-119)||(49841503-49841572)
chr3 (237-357)||(29817161-29817280)
chr3 (217-273)||(30345267-30345323)
chr3 (317-357)||(52138484-52138524)
chr3 (203-281)||(805634-805712)
chr3 (317-351)||(9258541-9258575)
chr3 (227-276)||(24302013-24302062)
chr3 (196-252)||(1448078-1448134)
chr3 (317-357)||(19736822-19736862)
[»] chr5 (20 HSPs)
chr5 (219-420)||(3394303-3394504)
chr5 (219-367)||(12492875-12493023)
chr5 (203-354)||(21915545-21915696)
chr5 (219-357)||(3301505-3301643)
chr5 (219-357)||(16347891-16348028)
chr5 (219-357)||(1288077-1288215)
chr5 (219-357)||(2075962-2076100)
chr5 (219-357)||(20318647-20318785)
chr5 (241-357)||(1274921-1275037)
chr5 (219-357)||(10638953-10639091)
chr5 (203-276)||(15370739-15370812)
chr5 (317-398)||(43558400-43558481)
chr5 (297-397)||(6368491-6368591)
chr5 (219-370)||(28977345-28977496)
chr5 (219-357)||(24178180-24178318)
chr5 (55-120)||(16134505-16134570)
chr5 (203-357)||(38578976-38579127)
chr5 (40-119)||(27998315-27998394)
chr5 (287-414)||(17341757-17341885)
chr5 (297-357)||(27302513-27302573)
[»] chr6 (11 HSPs)
chr6 (219-357)||(9706432-9706570)
chr6 (219-354)||(5631476-5631612)
chr6 (219-357)||(5258638-5258776)
chr6 (213-311)||(7079836-7079934)
chr6 (219-357)||(20428124-20428262)
chr6 (296-357)||(10100422-10100483)
chr6 (297-356)||(2689313-2689372)
chr6 (235-309)||(6641914-6641988)
chr6 (295-385)||(8811940-8812030)
chr6 (212-300)||(19338459-19338547)
chr6 (55-115)||(20834380-20834440)
[»] scaffold0606 (1 HSPs)
scaffold0606 (317-397)||(9273-9353)
[»] scaffold0024 (1 HSPs)
scaffold0024 (245-357)||(82377-82489)
[»] scaffold0570 (1 HSPs)
scaffold0570 (219-357)||(2758-2896)
[»] scaffold0113 (1 HSPs)
scaffold0113 (287-357)||(12154-12224)
[»] scaffold0171 (1 HSPs)
scaffold0171 (317-357)||(5848-5888)
[»] scaffold0896 (1 HSPs)
scaffold0896 (295-385)||(4386-4476)
[»] scaffold0018 (1 HSPs)
scaffold0018 (219-357)||(31124-31262)


Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 24 - 422
Target Start/End: Complemental strand, 12904957 - 12904559
Alignment:
Q  24 aatattgacatttttcattctatattgtctcgtcttaccatacatccaacacaatatcatcatctatgttatacttaatctattttcgtgttggttcatt 123  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | || |||| |||||||||||||||||||||||||||||||    
T  12904957 aatattgacatttttaattctatattgtctcgtcttaccatacatccaacacaatatccttatttatgctatacttaatctattttcgtgttggttcatt 12904858  T
Q  124 atctcccaatactctgtctctcgtacaacattgttggtcttacctctgtccgatnnnnnnnttcttccaacttgagtaatactttcgcatcatataaaac 223  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  12904857 atctcccaacactctgtccctcgtacaacattgttggtcttacctctgtccgataaaaaaattcttccaacttgagtaatactttcgcatcatataaaac 12904758  T
Q  224 acctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatattta 323  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12904757 acctgagacactcgtttatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatattta 12904658  T
Q  324 aaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaaattaaattctatatactccgtcttat 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12904657 aaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaaattacattctatatactccgtcttat 12904559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 219 - 370
Target Start/End: Original strand, 11992594 - 11992745
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | ||||||| | ||| ||||||||| || | | |||||||| |||||||||||||||| | | ||    
T  11992594 aaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatgatttacatctgcttctatttctccatcattttgtactatagacccaagat 11992693  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaa 370  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  ||||||||    
T  11992694 atttaaaccgtgtaacttggggtatgatatgatctccaactttcacctctaa 11992745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 191 - 281
Target Start/End: Complemental strand, 7292810 - 7292720
Alignment:
Q  191 caacttgagtaatactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcct 281  Q
    ||||||||| | |||||||||||||||||||||||||||| |||||||  |||||||||||| |||||| |||  ||||||||||||||||    
T  7292810 caacttgagcagtactttcgcatcatataaaacacctgagtcactccttcatttcaaccacccaacttggatttgatggtttacatctcct 7292720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 4807386 - 4807248
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||||| || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| | |||| | | ||    
T  4807386 aaaacacctgagactcttctccatttcaaccacccatcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaagacccaagat 4807287  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||| |||||||||| | |||||||||||||||||    
T  4807286 atttaaactgtgtaacttggggtatgatatgatctccaa 4807248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 452110 - 452248
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  452110 aaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 452209  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  452210 atttaaaccgtgtaacttggggtatgatatgatctccaa 452248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 45368112 - 45368249
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||||| || ||| |||||||||||| | ||||||| | ||  ||||||||| || | | |||||||| |||||||| ||| ||| | | ||    
T  45368112 aaaacacctgagactcttctccatttcaaccacccagcttgaatacgataatttacatctgcttctatttctccatcattttgtattatggacccaagat 45368211  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||| ||| | |||||||||||||||||    
T  45368212 atttaaaccgtgtaatttg-ggtatgatatgatctccaa 45368249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 357
Target Start/End: Complemental strand, 2610324 - 2610184
Alignment:
Q  217 ataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccat 316  Q
    |||||||||||||| | || ||| |||||||||||| | |||||||   ||||||||||||| || | | |||||  | ||||||||| |  ||| | |     
T  2610324 ataaaacacctgaggctcttctccatttcaaccacccagcttgaatatgatggtttacatctgcttctatttctctgtcattttgtacgaaggacccaag 2610225  T
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  2610224 atatttaaaccgtgtaacttggggtatgatatgatctccaa 2610184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 357
Target Start/End: Complemental strand, 13149134 - 13148969
Alignment:
Q  192 aacttgagtaatactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctc 291  Q
    |||||||||  |||||||  ||||||| ||||||||||  | || ||  |||||||||| | ||||||||| | ||| |||  |||| || | | |||||    
T  13149134 aacttgagtggtactttcttatcatatgaaacacctgaagctcttcttcatttcaaccatccaacttgaatacgatgatttgtatctacttctatttctc 13149035  T
Q  292 cattattttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    | | |||||||||||| |||   | ||||||||||||||||||||| | |||||||||||||||||    
T  13149034 cgtcattttgtactatggacctgagatatttaaaccgtgtaacttggggtatgatatgatctccaa 13148969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 287 - 357
Target Start/End: Original strand, 24584162 - 24584232
Alignment:
Q  287 ttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||| |||||||||||| ||| | | ||||||||||||||||||||| | | |||||||||||||||    
T  24584162 ttctccatcattttgtactatggacccaagatatttaaaccgtgtaacttgcggtctgatatgatctccaa 24584232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 23714561 - 23714649
Alignment:
Q  32 catttttcattctatattgtctcgtcttaccatacatccaacacaatatcatcatctatgttatacttaatctattttcgtgttggttc 120  Q
    ||||||| || |||| |||||| ||||||||| ||||||||||||| ||  | |||| || ||| |||||| |||||||||||||||||    
T  23714561 catttttaatcctattttgtctagtcttaccacacatccaacacaacattctaatctctgctatgcttaatttattttcgtgttggttc 23714649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 24102233 - 24102321
Alignment:
Q  32 catttttcattctatattgtctcgtcttaccatacatccaacacaatatcatcatctatgttatacttaatctattttcgtgttggttc 120  Q
    ||||||| || |||| |||||| ||||||||| ||||||||||||| ||  | |||| || ||| |||||| |||||||||||||||||    
T  24102233 catttttaatcctattttgtctagtcttaccacacatccaacacaacattctaatctctgctatgcttaatttattttcgtgttggttc 24102321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 357
Target Start/End: Original strand, 33594744 - 33594895
Alignment:
Q  206 tttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtact 305  Q
    ||||||||||  |||||||||| ||||||||||| || ||||||||| |  |||||||  ||| |||||||||||| | | ||||||    |||||||||    
T  33594744 tttcgcatcacttaaaacacctaagacactcctccatctcaaccacccagtttgaatttgatgttttacatctccttctatttctccgacgttttgtact 33594843  T
Q  306 atagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||| ||   | |||||||||| |||||| |  || |||||||||| ||||||    
T  33594844 atatacctaagatatttaaactgtgtaaatgctggtatgatatgaactccaa 33594895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 357
Target Start/End: Complemental strand, 30743340 - 30743279
Alignment:
Q  296 attttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||||| |||   | ||||||||||||||||||||| |||||| ||||||||||||    
T  30743340 attttgtactattgacctaagatatttaaaccgtgtaacttgggatatggtatgatctccaa 30743279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 14769986 - 14769946
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||||||||||||| || |||||||||||||||||    
T  14769986 atatttaaaccgtgtaacttatgctatgatatgatctccaa 14769946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 346
Target Start/End: Original strand, 3244139 - 3244266
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | |  ||| ||||| |||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  3244139 aaaacacctgaggctcatctccatttctaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 3244238  T
Q  319 atttaaaccgtgtaacttgtgatatgat 346  Q
    ||||||||||||||||||| ||||||||    
T  3244239 atttaaaccgtgtaacttgggatatgat 3244266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 357
Target Start/End: Original strand, 41763560 - 41763675
Alignment:
Q  242 tttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtgat 341  Q
    ||||||||||| | ||||||| | ||| ||||||||| || | | ||||||   |||||||||||| ||| | | ||||||||| |||| |||||| | |    
T  41763560 tttcaaccacccagcttgaatacgatgatttacatctgcttctatttctccgacattttgtactatggacccaagatatttaaatcgtgcaacttggggt 41763659  T
Q  342 atgatatgatctccaa 357  Q
    ||||||| ||||||||    
T  41763660 atgatataatctccaa 41763675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 876828 - 876788
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||| |||||||||||| || ||||||||||||||    
T  876828 atatttaaactgtgtaacttgtggtaggatatgatctccaa 876788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 8180476 - 8180436
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||||||||||||||   |||||||||||||||||    
T  8180476 atatttaaaccgtgtaacttggagtatgatatgatctccaa 8180436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 9460449 - 9460393
Alignment:
Q  192 aacttgagtaatactttcgcatcatataaaacacctgagacactcctctatttcaac 248  Q
    ||||||||| ||||||| | ||||||||||| || |||||| |||||| ||||||||    
T  9460449 aacttgagtgatacttttgtatcatataaaaaacatgagaccctcctccatttcaac 9460393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 38453206 - 38453246
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||| ||||||||||| | |||||||||||||||||    
T  38453206 atatttaaatcgtgtaacttggggtatgatatgatctccaa 38453246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 205 - 397
Target Start/End: Original strand, 10775896 - 10776085
Alignment:
Q  205 ctttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtac 304  Q
    ||||||||||| ||||||||  | || |||||||| |||||||||||| |  ||||||||||||||||||||||     ||||||||||| ||||||||     
T  10775896 ctttcgcatcacataaaacaagtaaggcactcctccatttcaaccacccattttgaattctatggtttacatctta---aacttctccatcattttgtat 10775992  T
Q  305 tatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaaa 397  Q
    ||||||| | | ||||||||||| ||||||||||| ||||||||||||||||| ||   |||||||||||||||| |||||||||||||||||    
T  10775993 tatagacccaagatatttaaaccatgtaacttgtggtatgatatgatctccaactttcccctctaaactagaaacatttcgccttttgctaaa 10776085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 206 - 357
Target Start/End: Complemental strand, 30807402 - 30807254
Alignment:
Q  206 tttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtact 305  Q
    |||| ||||| ||||||||||| ||||||||||| ||||||| || | |||||  ||| |||||||||||||| ||   | |||||  | ||||||||||    
T  30807402 tttcacatcacataaaacacctaagacactcctccatttcaaacaaccaactttgattttatggtttacatcttct---atttctcagtcattttgtact 30807306  T
Q  306 atagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||| ||| | ||||||||||||||||||||| |||||||||||||||||    
T  30807305 atagactccaaacatttaaaccgtgtaacttgtggtatgatatgatctccaa 30807254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 241 - 357
Target Start/End: Complemental strand, 50286743 - 50286627
Alignment:
Q  241 atttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtga 340  Q
    |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||||| ||||||||||||||||||||||| |     
T  50286743 atttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacacaatatatttaaaccgtgtaacttgggg 50286644  T
Q  341 tatgatatgatctccaa 357  Q
    |||||||||||||||||    
T  50286643 tatgatatgatctccaa 50286627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 23906789 - 23906927
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  23906789 aaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 23906888  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  23906889 atttaaaccgtgtaacttggggtatgatatgatctccaa 23906927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 33227003 - 33226865
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||||| || ||| |||||||||||| | |||||||   |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  33227003 aaaacacctgagactcttctccatttcaaccacccagcttgaatatgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 33226904  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  33226903 atttaaaccgtgtaacttggggtatgatatgatctccaa 33226865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 48174581 - 48174719
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||||| ||||||| | |||| |||||||| || | | |||||| | | ||||||| |  ||| | | ||    
T  48174581 aaaacacctgaggctcttctccatttcaaccacctagcttgaatacgatggcttacatctgcttctatttctccgtcactttgtacgaaggacccaagat 48174680  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  48174681 atttaaaccgtgtaacttggggtatgatatgatctccaa 48174719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 202 - 353
Target Start/End: Complemental strand, 42037677 - 42037521
Alignment:
Q  202 atactttcgcatcatataaaacacctgagacactcctcta-tttcaaccacctaact----tgaattctatggtttacatctcctccaacttctccatta 296  Q
    |||||||| ||||| |||||||||||||| |||||||| | ||||||||| ||| ||    || ||||  |||||||||||||||   | |||||  | |    
T  42037677 atactttcacatcacataaaacacctgaggcactcctccaatttcaaccatctagctagcttggattcagtggtttacatctccttatatttctcagtca 42037578  T
Q  297 ttttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatct 353  Q
    ||||||||||||||  | | |||||||||||||||||||||||  ||||||||||||    
T  42037577 ttttgtactatagattcaagatatttaaaccgtgtaacttgtgggatgatatgatct 42037521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 27450661 - 27450799
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    ||||||| |||| | || ||| |||||||||||| | ||||||| | ||| ||||||||| || | | |||||||| |||||| ||||| ||| | | ||    
T  27450661 aaaacacttgaggctcttctccatttcaaccacccagcttgaatacgatgatttacatctgcttctatttctccatcattttgcactatggacccaagat 27450760  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    || ||||| |||||||||| | |||||||||||||||||    
T  27450761 atgtaaactgtgtaacttggggtatgatatgatctccaa 27450799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 372
Target Start/End: Original strand, 39754846 - 39755012
Alignment:
Q  206 tttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtact 305  Q
    |||||||||| ||||||||| |||| ||||  |  |||||||||||  |||||| |||| ||| |||||||||||| | | ||||   |  |||||||||    
T  39754846 tttcgcatcacataaaacacttgaggcactggttcatttcaaccactaaacttggattcaatgatttacatctccttctatttctttgtcgttttgtact 39754945  T
Q  306 atagacaccat-atatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaac 372  Q
    |||||| |||| |||||||||  |||| ||||||| ||||||||||||| ||| ||  ||||||||||    
T  39754946 atagac-ccatgatatttaaagtgtgtgacttgtggtatgatatgatcttcaactttcacctctaaac 39755012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 56375084 - 56374946
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | ||||||| | |||| ||| |||| || | | |||||| | ||||||||| |  ||| | | ||    
T  56375084 aaaacacctgaggctcttctcaatttcaaccacccagcttgaatacgatggcttatatctgcttctatttctccgtcattttgtacgaaggacccaagat 56374985  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | ||||||||| |||||||    
T  56374984 atttaaaccgtgtaacttggggtatgatatgctctccaa 56374946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 357
Target Start/End: Original strand, 1211871 - 1212016
Alignment:
Q  212 atcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagac 311  Q
    |||||| ||||||  |||| | || ||| |||||||| ||||||||||||| | ||| |||||| || || | | |||||  |||||||||||||| |||    
T  1211871 atcatacaaaacatttgaggctcttctccatttcaactacctaacttgaatacgatgatttacacctgcttctatttctctgttattttgtactatggac 1211970  T
Q  312 accatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    || | ||||||||||  |||||| |  | |||||||||||||||||    
T  1211971 acaagatatttaaactatgtaacgtaaggtatgatatgatctccaa 1212016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 15183669 - 15183614
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaactt 258  Q
    ||||||||||||| ||||||||| ||||||||||||| || ||||||||| |||||    
T  15183669 tactttcgcatcacataaaacacttgagacactcctccatctcaaccacccaactt 15183614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 436023 - 435885
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||  | ||||||| | |||  |||||||| || | | |||||| | ||||| ||| |  ||| | | ||    
T  436023 aaaacacctgaggctcttctccatttcaaccactcagcttgaatacgatgacttacatctgcttctatttctccgtcattttatacgaaggacccaagat 435924  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  435923 atttaaaccgtgtaacttggggtatgatatgatctccaa 435885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 353
Target Start/End: Complemental strand, 53707588 - 53707454
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||| ||||| | || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  53707588 aaaacatctgagtctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 53707489  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatct 353  Q
    ||||| ||||||||||||| | |||||||||||||    
T  53707488 atttagaccgtgtaacttggggtatgatatgatct 53707454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 357
Target Start/End: Original strand, 31960324 - 31960440
Alignment:
Q  241 atttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtga 340  Q
    |||||||||||| | |||||||   |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||||||||||||||||| ||| |     
T  31960324 atttcaaccacccagcttgaatatgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgtaaattgggg 31960423  T
Q  341 tatgatatgatctccaa 357  Q
    |||||||||||||||||    
T  31960424 tatgatatgatctccaa 31960440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 48623015 - 48623153
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| |  | ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  48623015 aaaacacctgaggcttttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 48623114  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||| ||||||| ||| | ||||||||| |||||||    
T  48623115 atttaaatcgtgtaatttggggtatgatatgctctccaa 48623153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 30853384 - 30853339
Alignment:
Q  43 ctatattgtctcgtcttaccatacatccaacacaatatcatcatct 88  Q
    |||| |||||| ||||||||||||||||||||||| ||| ||||||    
T  30853384 ctatcttgtctagtcttaccatacatccaacacaacatcttcatct 30853339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 9e-40; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 203 - 420
Target Start/End: Complemental strand, 25985350 - 25985134
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgt 302  Q
    ||||| ||||||||||||||||| |||| |||||||| |||||||| ||| |  ||| |||| |||||||||||||||| | | ||||||||  ||||||    
T  25985350 tacttccgcatcatataaaacacttgaggcactcctccatttcaactacccattttggattcaatggtttacatctccttctatttctccatatttttgt 25985251  T
Q  303 actatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaaa-ttaa 401  Q
    ||||||||  | ||||||||||||||||||||||||| ||||||||||  ||||| ||  |||||||| ||||||| | ||||||| |||||||| |||     
T  25985250 actatagatccaatatatttaaaccgtgtaacttgtggtatgatatga--tccaactttcacctctaagctagaaatgcttcgcctcttgctaaacttac 25985153  T
Q  402 attctatatactccgtctt 420  Q
    |||| |||||||| |||||    
T  25985152 attccatatactctgtctt 25985134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 36565729 - 36565867
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  36565729 aaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacaaaggacccaagat 36565828  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  36565829 atttaaaccgtgtaacttggggtatgatatgatctccaa 36565867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 370
Target Start/End: Original strand, 18849701 - 18849754
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaa 370  Q
    ||||||||||||||||||||| | |||||||||||||||||||| |||||||||    
T  18849701 atatttaaaccgtgtaacttggggtatgatatgatctccaatttttacctctaa 18849754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 356
Target Start/End: Original strand, 42854492 - 42854629
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    ||||||| |||| | || ||| |||||||||||| | ||||||| | ||| ||||||||| || | | ||||| |  ||||||||| || ||| | | ||    
T  42854492 aaaacacatgaggctcttctccatttcaaccacccagcttgaatacgatgatttacatctgcttctatttctcaaacattttgtacgatggacccaagat 42854591  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctcca 356  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  42854592 atttaaaccgtgtaacttggggtatgatatgatctcca 42854629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 4032982 - 4033120
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| |||||||||   ||| ||||||| | ||   | |||||||| ||| ||||||||  || | | ||    
T  4032982 aaaacacctgaggctcttctccatttcaaccacccaacttgaatatgatgatttacatatgcttttatttctccatcattgtgtactatgaacccaagat 4033081  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    | ||||||||||||||||| | |||||||||||||||||    
T  4033082 acttaaaccgtgtaacttggggtatgatatgatctccaa 4033120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 12492330 - 12492468
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    ||||||| |||| | || ||| |||||||||||| ||| ||||| | || | |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  12492330 aaaacacatgaggctcttctccatttcaaccacccaacctgaatacgatagcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 12492429  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  12492430 atttaaaccgtgtaacttggggtatgatatgatctccaa 12492468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 413
Target Start/End: Original strand, 41444890 - 41444987
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgct-aaattaaattctatatact 413  Q
    |||||||||||  |||||||||| ||||||||||||||||  ||  ||||||||  |||||| | ||||||||||||| |||||| |||| |||||||    
T  41444890 atatttaaaccaagtaacttgtggtatgatatgatctccacctttcacctctaagttagaaatgcttcgccttttgctaaaattacattccatatact 41444987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 357
Target Start/End: Original strand, 15215837 - 15215896
Alignment:
Q  298 tttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||| ||| | ||||||||||||||||||||||  | |||||||||||||||||    
T  15215837 tttgtactatggacccaatatatttaaaccgtgtaactttgggtatgatatgatctccaa 15215896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 36544946 - 36544808
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccat-a 317  Q
    |||||||||||| | ||  || |||||||||||| ||||||||| | |||  |||||||| || | | |||||| | ||||||||| | || | |||| |    
T  36544946 aaaacacctgaggctcttatccatttcaaccacccaacttgaatacgatgacttacatctgcttctatttctccgtcattttgtacgaaagcc-ccatga 36544848  T
Q  318 tatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||| ||||||||| | |||||||||||||||||    
T  36544847 tatttaaaccttgtaacttggggtatgatatgatctccaa 36544808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 30748276 - 30748232
Alignment:
Q  234 ctcctctatttcaaccacctaacttgaattctatggtttacatct 278  Q
    |||||| |||||||||||||| ||||||||| |||||||||||||    
T  30748276 ctcctccatttcaaccacctagcttgaattcgatggtttacatct 30748232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 43732230 - 43732270
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||| ||||||| |||||||||||||||||    
T  43732230 atatttaaaccgtgttacttgtgctatgatatgatctccaa 43732270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 45332073 - 45332113
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  45332073 atatttaaaccgtgtaacttgtggtatgacatgatctccaa 45332113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 351
Target Start/End: Original strand, 8880020 - 8880054
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgat 351  Q
    ||||||||||||||||||||| |||||||||||||    
T  8880020 atatttaaaccgtgtaacttgggatatgatatgat 8880054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 281
Target Start/End: Original strand, 42493774 - 42493852
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcct 281  Q
    ||||||||  ||| ||||||||| |||| |  |||||||||| ||||||| | ||| ||||| ||||||||||||||||    
T  42493774 tactttcgtgtcacataaaacacatgaggccttcctctattttaaccacccagcttaaattccatggtttacatctcct 42493852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 16351199 - 16351162
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctct 240  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  16351199 tactttcacatcacataaaacacctgagacactcctct 16351162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 38328288 - 38328357
Alignment:
Q  212 atcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcct 281  Q
    |||| ||||||||||| ||||||||||  |||||||| ||| |||||  |||| ||| ||||||||||||    
T  38328288 atcacataaaacacctaagacactccttcatttcaactacccaacttagattcaatgatttacatctcct 38328357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 39051129 - 39051060
Alignment:
Q  24 aatattgacatttttcattctatattgtctcgtcttaccatacatccaacacaatatcatcatctatgtt 93  Q
    ||||||| ||||| | |||||||  ||||| ||||||||| ||||| ||||||| ||| |||||||||||    
T  39051129 aatattgtcatttctaattctatcatgtcttgtcttaccacacatctaacacaacatcctcatctatgtt 39051060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 206 - 397
Target Start/End: Complemental strand, 28528388 - 28528197
Alignment:
Q  206 tttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtact 305  Q
    |||||||||| |||||||||||||| |||||||| |||||||||||| | || | |||| |||||||||| ||||| | | ||||||||| |||||||      
T  28528388 tttcgcatcacataaaacacctgaggcactcctcaatttcaaccacccagctcggattcgatggtttacacctccttctatttctccattgttttgtaac 28528289  T
Q  306 atagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaaa 397  Q
    |||||| | | |||||||||| |||||||||||| |||| |||||||||||| ||  |||||||  ||||||||| ||||||| ||||||||    
T  28528288 atagacccaagatatttaaactgtgtaacttgtggtatgctatgatctccaactttcacctctaggctagaaacgcttcgcctcttgctaaa 28528197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 232 - 384
Target Start/End: Complemental strand, 6640907 - 6640755
Alignment:
Q  232 cactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgt 331  Q
    ||||||||||||||||||||| |||||| || | |||||||||| ||||| | | |||||||| |||||||||||||||| | | |||||||||||||||    
T  6640907 cactcctctatttcaaccacccaacttggatccaatggtttacacctccttctatttctccataattttgtactatagactcaagatatttaaaccgtgt 6640808  T
Q  332 aacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttc 384  Q
    |||||||| | | |||||||||| || ||  ||||||| ||||||||||||||    
T  6640807 aacttgtggtgtaatatgatctctaactttcacctctacactagaaacgtttc 6640755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 51601852 - 51601714
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||||| || ||||||||| |||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  51601852 aaaacacctgagactcttctctatttccaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 51601753  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  51601752 atttaaaccgtgtaacttggggtatgatatgatctccaa 51601714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 224 - 357
Target Start/End: Complemental strand, 7921716 - 7921583
Alignment:
Q  224 acctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatattta 323  Q
    ||||||||| ||| || |||||||| ||| ||||||||||| |||||||||||||||| | | ||||| ||  ||||||||||| ||  | | |||| ||    
T  7921716 acctgagaccctcatccatttcaacaacccaacttgaattcgatggtttacatctccttctatttctcaatcgttttgtactatggatccaagatatata 7921617  T
Q  324 aaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    || ||||||||||||| || ||||||||||||||    
T  7921616 aatcgtgtaacttgtggtaagatatgatctccaa 7921583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 357
Target Start/End: Complemental strand, 27445670 - 27445554
Alignment:
Q  241 atttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtga 340  Q
    |||||||||| | ||||||||| | ||| ||||||||| || | | |||||||| |||||||||||| ||| | | ||| ||||||||||||||||| |     
T  27445670 atttcaaccaaccaacttgaatacgatgatttacatctgcttctatttctccatcattttgtactatggacccaacataattaaaccgtgtaacttgggg 27445571  T
Q  341 tatgatatgatctccaa 357  Q
    ||||||| |||||||||    
T  27445570 tatgataagatctccaa 27445554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 357
Target Start/End: Complemental strand, 51234422 - 51234271
Alignment:
Q  205 ctttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtac 304  Q
    |||||| |||| |||||| ||||||| |  | ||| |||||||||||| ||||||||||  ||| ||||||||| || ||| |||||||| |||||| ||    
T  51234422 ctttcgtatcacataaaagacctgaggctattctccatttcaaccacccaacttgaatttgatgatttacatctgcttcaatttctccatcattttgcac 51234323  T
Q  305 tatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||| ||| | | ||||||||||  || |||||||  |||||||||||||||||    
T  51234322 tatggactcaagatatttaaactatgaaacttgt-ttatgatatgatctccaa 51234271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 357
Target Start/End: Complemental strand, 1210517 - 1210401
Alignment:
Q  241 atttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtga 340  Q
    |||||||||||| | ||||||| | |||| |||||||| ||   | |||||||| ||||||||| | |||| | | |||||||||| |||||||||| |     
T  1210517 atttcaaccacccagcttgaatacgatggcttacatctgcttttatttctccatcattttgtacgaaagacccaagatatttaaactgtgtaacttgggg 1210418  T
Q  341 tatgatatgatctccaa 357  Q
    |||||||||||||||||    
T  1210417 tatgatatgatctccaa 1210401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 43240869 - 43241007
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | |||||||   |||| |||||||| || | | |||||| | ||||||||| |  ||  | | ||    
T  43240869 aaaacacctgaggctcttctccatttcaaccacccagcttgaatatgatggcttacatctgcttccatttctccgtcattttgtacgaaggatccaagat 43240968  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  43240969 atttaaaccgtgtaacttggggtatgatatgatctccaa 43241007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 413
Target Start/End: Complemental strand, 40419377 - 40419280
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgct-aaattaaattctatatact 413  Q
    |||||||||| |||||||||||| ||||||||||||||||| ||  |||| ||  ||||||| | || |||||||||| |||||| |||| |||||||    
T  40419377 atatttaaactgtgtaacttgtggtatgatatgatctccaactttcacctttacgctagaaatgctttgccttttgctaaaattacattccatatact 40419280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 355
Target Start/End: Original strand, 34827574 - 34827726
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgt 302  Q
    |||||||  |||| ||||||||| |||| | || ||| ||||||||||   ||||||||| | ||| ||||||| | || | | |||||| | |||||||    
T  34827574 tactttcttatcacataaaacacatgaggctcttctccatttcaaccattcaacttgaatacaatgatttacatatgcttctatttctccgtcattttgt 34827673  T
Q  303 actatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctcc 355  Q
    ||||| ||| | | ||||||||||| ||||||||  | |||||||||||||||    
T  34827674 actatggacccaagatatttaaaccttgtaacttagggtatgatatgatctcc 34827726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 18793460 - 18793503
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttca 246  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||    
T  18793460 tactttcgcatcacataaaacacctgagacactcctccatttca 18793503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 49347881 - 49348020
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | ||||||| | |||| ||||| || || | | |||||| | ||||||||| |  ||| | | ||    
T  49347881 aaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatggcttacacctgcttctatttctccgtcattttgtacgaaggacccaagat 49347980  T
Q  319 atttaaacc-gtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||| |||||||||| | |||||||||||||||||    
T  49347981 atttaaaccagtgtaacttggggtatgatatgatctccaa 49348020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 26016275 - 26016231
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttcaa 247  Q
    |||||| |||||| ||||||||||||||||||||||| |||||||    
T  26016275 tactttagcatcacataaaacacctgagacactcctccatttcaa 26016231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 357
Target Start/End: Original strand, 32083235 - 32083371
Alignment:
Q  221 aacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatat 320  Q
    |||||||||| | || ||| |||||||||||| | ||||||| | ||| ||||||| | |  | | |||||| | |||||||||||| ||| | | ||||    
T  32083235 aacacctgaggctcttctccatttcaaccacccagcttgaatacgatgatttacatttgcctctatttctccgtcattttgtactatggacccaagatat 32083334  T
Q  321 ttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||  ||| |||||| | |||||||||||||||||    
T  32083335 ttaaattgtgcaacttggggtatgatatgatctccaa 32083371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 371
Target Start/End: Complemental strand, 3877545 - 3877491
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaa 371  Q
    |||||||||  |||||| |||||| ||||||| ||||||||||| ||||||||||    
T  3877545 atatttaaattgtgtaatttgtgaaatgatataatctccaatttttacctctaaa 3877491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 8671714 - 8671576
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||| ||||||| | ||||||| | |||  |||||||| || | | |||| | | ||||||||| |  ||| | | ||    
T  8671714 aaaacacctgagtctcttctccattttaaccacccagcttgaatacgatgacttacatctgcttctatttcttcgtcattttgtacgaaggacccaagat 8671615  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||  | |||||||||||||||||    
T  8671614 atttaaaccgtgtaacttagggtatgatatgatctccaa 8671576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 51441252 - 51441390
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    ||||||| |||| | || ||| |||||||||||| | |||||||   |||| ||| |||| || | | |||||| | ||||||||  | |||| | | ||    
T  51441252 aaaacacttgaggctcttctccatttcaaccacccagcttgaatatgatggcttagatctgcttctatttctccgtcattttgtatgaaagacccaagat 51441351  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||| |||||||||| | |||||||||||||||||    
T  51441352 atttaaactgtgtaacttggggtatgatatgatctccaa 51441390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 357
Target Start/End: Complemental strand, 19936294 - 19936177
Alignment:
Q  241 atttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattatttt-gtactatagacaccatatatttaaaccgtgtaacttgtg 339  Q
    |||||||||||| | ||||||| | ||| ||||||| | || | | |||||| | ||||| ||| ||| ||| | | ||||||||||| ||||||||| |    
T  19936294 atttcaaccacccagcttgaatacgatgatttacatatgcttctatttctccttcatttttgtattatggacccaagatatttaaaccatgtaacttggg 19936195  T
Q  340 atatgatatgatctccaa 357  Q
     |||||||||||||||||    
T  19936194 gtatgatatgatctccaa 19936177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 357
Target Start/End: Original strand, 37463378 - 37463491
Alignment:
Q  244 tcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtgatat 343  Q
    ||||||||||| ||| ||| | ||| | ||||||| || | | |||||| | |||||||||||| ||| | | |||||||||| |||||||| |   |||    
T  37463378 tcaaccacctagcttaaatacaatgatatacatctgcttctatttctccgtcattttgtactatggactcaagatatttaaactgtgtaactcggagtat 37463477  T
Q  344 gatatgatctccaa 357  Q
    ||||||||||||||    
T  37463478 gatatgatctccaa 37463491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 370
Target Start/End: Original strand, 32066836 - 32066907
Alignment:
Q  296 attttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaa 370  Q
    ||||||||||||  || | | |||||||||| |||||||||||   |||||||||||||||||||  ||||||||    
T  32066836 attttgtactatgaacccaaaatatttaaactgtgtaacttgt---atgatatgatctccaattttcacctctaa 32066907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 52442823 - 52442899
Alignment:
Q  48 ttgtctcgtcttaccatacatccaacacaatatcatcatctatgttatacttaatctattttcgtgttggttcatta 124  Q
    |||||| ||||||||| ||||||||||||| ||| |||| | || ||  |||||| |||||| |||||| |||||||    
T  52442823 ttgtctagtcttaccacacatccaacacaacatcctcatgtctgctacgcttaatttatttttgtgttgtttcatta 52442899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 203 - 399
Target Start/End: Original strand, 43793515 - 43793708
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgt 302  Q
    ||||||| ||||| |||| |||||||||  ||||||| |||||||||||||| |||  |||  ||||||||||||||||   | |||| | | |||||||    
T  43793515 tactttcacatcacataatacacctgaggaactcctccatttcaaccacctagcttagatttgatggtttacatctcct---atttcttcgtcattttgt 43793611  T
Q  303 actatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaaatt 399  Q
    ||||||||| | | |||||||||  |||||||| ||| |||||||||||||| || ||  ||||||| ||| |||||| ||||||| ||||||||||    
T  43793612 actatagacccaagatatttaaaatgtgtaactagtggtatgatatgatctctaactttcacctctacactcgaaacgcttcgcctcttgctaaatt 43793708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 38606799 - 38606661
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    ||||||||| || | || ||| |||||||||||| | ||||||| | ||||||||||||| || | | |||| | | |||||||||||| ||| | | ||    
T  38606799 aaaacacctaaggctcttctccatttcaaccacccagcttgaatacgatggtttacatctgcttctatttcttcgtcattttgtactatggacccaagat 38606700  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  38606699 atttaaaccgtgtaacttgggatatgatatgatctccaa 38606661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 46356339 - 46356477
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| ||||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  46356339 aaaacacctgaggctcttctccatttcaaccacccaacttgaatacgatggcttacatctgcttctatttctccgtcattttgtacaaaggacccaagat 46356438  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  46356439 atttaaaccgtgtaacttggggtatgatatgatctccaa 46356477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 33350294 - 33350432
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    ||||||| |||| | || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| | |||| | | ||    
T  33350294 aaaacacttgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaagaccctagat 33350393  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  33350394 atttaaaccgtgtaacttggggtatgatatgatctccaa 33350432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 353
Target Start/End: Complemental strand, 11593754 - 11593620
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||||| ||||||||| |  ||| | | ||    
T  11593754 aaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccatcattttgtacgaaggacccaagat 11593655  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatct 353  Q
    ||||||||||| ||||||| | |||||||||||||    
T  11593654 atttaaaccgtctaacttggggtatgatatgatct 11593620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 36651788 - 36651650
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  36651788 aaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 36651689  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||| |||||||| | |||||||||||||||||    
T  36651688 atttaaaccgcgtaacttggggtatgatatgatctccaa 36651650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 31005017 - 31004880
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| ||||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||  | | ||    
T  31005017 aaaacacctgaggctcttctccatttcaaccacccaacttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggagccaagat 31004918  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||| ||||||||||| | |||||||||||||||||    
T  31004917 atttaaa-cgtgtaacttggggtatgatatgatctccaa 31004880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 287 - 357
Target Start/End: Complemental strand, 32630333 - 32630263
Alignment:
Q  287 ttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||| |||||||| ||| ||| | | ||||||||||||||||||||| | |||||||||||||||||    
T  32630333 ttctccatcattttgtaatatggacccaagatatttaaaccgtgtaacttggggtatgatatgatctccaa 32630263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 356
Target Start/End: Complemental strand, 37616710 - 37616573
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    ||||||| |||| | || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  37616710 aaaacacttgaggctcttctccatttcaaccacccagcttgaatacaatggcttacatctgcttctatttctccgtcattttgtacaaaggacccaagat 37616611  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctcca 356  Q
    ||||||| ||||||||||| | ||||||||||||||||    
T  37616610 atttaaatcgtgtaacttggggtatgatatgatctcca 37616573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 357
Target Start/End: Complemental strand, 18637387 - 18637236
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgt 302  Q
    |||||| | |||| ||||||||| |||| |||||||| ||||||||  |  | |||| |||| ||||||||||||| ||   | ||| || | |||||||    
T  18637387 tacttttgtatcacataaaacacatgaggcactcctccatttcaactgctcagcttggattcgatggtttacatcttct---atttccccgtcattttgt 18637291  T
Q  303 actatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||  ||   | |||||||||  ||||||||||||||||||||||||||||||    
T  18637290 actatcaacttaagatatttaaaatgtgtaacttgtgatatgatatgatctccaa 18637236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 357
Target Start/End: Complemental strand, 18650822 - 18650671
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgt 302  Q
    |||||| | |||| ||||||||| |||| |||||||| ||||||||  |  | |||| |||| ||||||||||||| ||   | ||| || | |||||||    
T  18650822 tacttttgtatcacataaaacacatgaggcactcctccatttcaactgctcagcttggattcgatggtttacatcttct---atttccccgtcattttgt 18650726  T
Q  303 actatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||  ||   | |||||||||  ||||||||||||||||||||||||||||||    
T  18650725 actatcaacttaagatatttaaaatgtgtaacttgtgatatgatatgatctccaa 18650671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 36514531 - 36514596
Alignment:
Q  55 gtcttaccatacatccaacacaatatcatcatctatgttatacttaatctattttcgtgttggttc 120  Q
    ||||||||| ||||||||| ||| ||| |||||| || || ||||||| |||||||||||||||||    
T  36514531 gtcttaccacacatccaacgcaacatcctcatctctgctacacttaatttattttcgtgttggttc 36514596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 279
Target Start/End: Complemental strand, 12965764 - 12965677
Alignment:
Q  191 caacttgagtaatactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctc 279  Q
    ||||||||||  || ||||| |||| ||||||||| |||  ||||| || |||||||||||| ||||||||||| |||| |||||||||    
T  12965764 caacttgagtggtattttcgtatcacataaaacacttgatgcactc-tccatttcaaccacccaacttgaattcaatggattacatctc 12965677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 18608276 - 18608316
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  18608276 atatttaaaatgtgtaacttgtgatatgatatgatctccaa 18608316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 18626602 - 18626562
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  18626602 atatttaaaatgtgtaacttgtgatatgatatgatctccaa 18626562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 397
Target Start/End: Complemental strand, 20499791 - 20499711
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaaa 397  Q
    |||||||||  |||||||| ||| ||||||||||||||   ||| | | ||||| ||||||||| ||||||||||||||||    
T  20499791 atatttaaaatgtgtaactggtggtatgatatgatctcatgttttttcgtctaagctagaaacgcttcgccttttgctaaa 20499711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 39906965 - 39907005
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  39906965 atatttaaaccgtgtaacatgggatatgatatgatctccaa 39907005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 357
Target Start/End: Complemental strand, 49029035 - 49028923
Alignment:
Q  245 caaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtgatatg 344  Q
    |||||||| | ||||||| | ||||  ||||||| || | | |||||||| ||||||||| |  ||| | | ||||||||||||||||||||| | ||||    
T  49029035 caaccacccagcttgaatacgatggcatacatctgcttctatttctccatcattttgtacaaaggacccaagatatttaaaccgtgtaacttggggtatg 49028936  T
Q  345 atatgatctccaa 357  Q
    || ||||||||||    
T  49028935 atctgatctccaa 49028923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 357
Target Start/End: Original strand, 24177734 - 24177821
Alignment:
Q  270 tttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||| || | | |||||| | |||||||||||| ||| |   ||||||||||||||||| ||| | |||||||||||||||||    
T  24177734 tttacatctgcttctatttctccgtcattttgtactattgacccgtgatatttaaaccgtgtaaattggggtatgatatgatctccaa 24177821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 346
Target Start/End: Original strand, 24550178 - 24550304
Alignment:
Q  220 aaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatata 319  Q
    |||||| |||||| |||||| |||||||||||| ||||||||||| |   |||||||||||| | | |  ||| |  ||||||| ||| |||   | |||    
T  24550178 aaacacgtgagaccctcctccatttcaaccacccaacttgaattcaacaatttacatctccttctattaatccgtcgttttgtaatatggactaaagata 24550277  T
Q  320 tttaaaccgtgtaacttgtgatatgat 346  Q
    |||||| |||||||||| |||||||||    
T  24550278 tttaaatcgtgtaacttatgatatgat 24550304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 355
Target Start/End: Complemental strand, 48919182 - 48919046
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||| ||| | ||||||| | ||| || |||| | || | | |||||| | |||||||||||| ||  | | ||    
T  48919182 aaaacacctgaggctcttctccatttcaactacccagcttgaatacgatgattcacatatgcttctatttctccgtcattttgtactatggatccaaaat 48919083  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctcc 355  Q
    ||||||||||||||||||| | | | |||||||||||    
T  48919082 atttaaaccgtgtaacttggggtgtaatatgatctcc 48919046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 25191173 - 25191035
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||||| || ||| |||||||||||| | ||||||| | ||| ||||||| | || | | |||||||| |||||||||||||||| | | ||    
T  25191173 aaaacacctgagactcttctccatttcaaccacccagcttgaatacgatgatttacatttgcttctatttctccatcattttgtactatagacccaagat 25191074  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  25191073 atttaaaccgtgtaacttgggctatgatatgatctccaa 25191035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 38849888 - 38849750
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | |||||||||| | ||| | | ||    
T  38849888 aaaacacctgaggctcttctccatttcaaccacccagcttgaatacaatggcttacatctgcttctatttctccgtcattttgtactgtggacccaagat 38849789  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||| ||| | |||||||||||||||||    
T  38849788 atttaaaccgtgtaaattgaggtatgatatgatctccaa 38849750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 241 - 397
Target Start/End: Complemental strand, 44395199 - 44395046
Alignment:
Q  241 atttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtga 340  Q
    ||||||||||| |||||||||||| ||||||||||||| ||   | |||||  || ||| ||||||| ||| | | ||||||||| ||||||||||| |     
T  44395199 atttcaaccacttaacttgaattcgatggtttacatcttct---atttctctgttgtttagtactatggacccgagatatttaaatcgtgtaacttgcgt 44395103  T
Q  341 tatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaaa 397  Q
    | || |||||||||||| ||  | |||||||||||||| | || |||||||||||||    
T  44395102 tgtggtatgatctccaactttcatctctaaactagaaatgctttgccttttgctaaa 44395046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 212 - 357
Target Start/End: Complemental strand, 27917373 - 27917228
Alignment:
Q  212 atcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagac 311  Q
    |||| ||||||||| |||| | || |||||||||| | ||| ||||||||| | ||| |||| || | ||   | |||||| | |||||||||||| |||    
T  27917373 atcacataaaacacatgaggctcttctctatttcagctacccaacttgaatacgatgatttatatatgcttatatttctccgtcattttgtactatggac 27917274  T
Q  312 accatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
     | | ||||||||||||||||||||| |||||||||||||||||||    
T  27917273 tcaagatatttaaaccgtgtaacttgggatatgatatgatctccaa 27917228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 317 - 397
Target Start/End: Original strand, 1448199 - 1448279
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaaa 397  Q
    ||||||||||| || ||||| |||||||||||||||||||| || ||||||||| ||||||| ||||| ||| ||| ||||    
T  1448199 atatttaaaccatgcaacttttgatatgatatgatctccaacttttacctctaagctagaaatgtttcacctcttgttaaa 1448279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 195 - 391
Target Start/End: Complemental strand, 46145971 - 46145775
Alignment:
Q  195 ttgagtaatactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccat 294  Q
    ||||| |||||||| | ||||||||||||||| | | |  | ||| ||| |||||| ||||||||||||| |||||||||| ||| | | | | || | |    
T  46145971 ttgagcaatacttttgaatcatataaaacaccggtggccttgctccattccaaccatctaacttgaattcaatggtttacacctctttctattgctacgt 46145872  T
Q  295 tattttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgcctttt 391  Q
      ||||||||||| ||| | | ||||||||||||| ||||||||| ||||| || |||||||| ||  ||||||||  || ||| | ||||||||||    
T  46145871 cgttttgtactatggactcaaaatatttaaaccgtataacttgtggtatgacataatctccaactttaacctctaagttaaaaatgcttcgcctttt 46145775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 338
Target Start/End: Complemental strand, 11581266 - 11581119
Alignment:
Q  191 caacttgagtaatactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttct 290  Q
    |||||||||  ||||||||| |||| ||||||||||||||||| || |  ||||||||||   |  ||||||  |||| |||| ||||||  ||| ||||    
T  11581266 caacttgagcgatactttcgaatcacataaaacacctgagacattcattcatttcaaccattcagtttgaatcttatgatttatatctccatcaatttct 11581167  T
Q  291 ccattattttgtactatagacaccatatatttaaaccgtgtaacttgt 338  Q
    | || ||||||||| |||||| | ||||||||||||  ||||||||||    
T  11581166 caatcattttgtaccatagacccgatatatttaaactttgtaacttgt 11581119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 28245231 - 28245093
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||| ||||||| || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||||| ||||||||| |  ||  | | ||    
T  28245231 aaaacaactgagactcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccatcattttgtacgaaggatccaagat 28245132  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||| |||||||||||| | ||| |||||||||||||    
T  28245131 atttaagccgtgtaacttggggtattatatgatctccaa 28245093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 47542199 - 47542337
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | |||||||   |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  47542199 aaaacacctgaggctcttctccatttcaaccacccagcttgaatatgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 47542298  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | ||||| |||||||||||    
T  47542299 atttaaaccgtgtaacttggggtatgaaatgatctccaa 47542337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 51448197 - 51448335
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||| ||| | || ||| |||||||||||| | ||||||| | || | |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  51448197 aaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatagcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 51448296  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  51448297 atttaaaccgtgtaacttggggtatgatatgatctccaa 51448335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 50632288 - 50632372
Alignment:
Q  191 caacttgagtaatactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttaca 275  Q
    ||||||||||  ||||||| ||||| ||||||||  | || |||||||| |||||||||||| |  |||||||||||||||||||    
T  50632288 caacttgagtggtactttctcatcacataaaacatttaaggcactcctccatttcaaccacccaggttgaattctatggtttaca 50632372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 19757787 - 19757724
Alignment:
Q  294 ttattttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||||||| ||| | | ||||||||||| ||||||||| | |||||||||||||||||    
T  19757787 ttattttgtactatggacccaagatatttaaaccatgtaacttggggtatgatatgatctccaa 19757724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 50632442 - 50632528
Alignment:
Q  192 aacttgagtaatactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatct 278  Q
    |||||||||  ||||||| ||||| ||||||||| | || |||||||| || ||||||||| |  |||||||||||||||| |||||    
T  50632442 aacttgagtggtactttctcatcacataaaacacttaaggcactcctccatctcaaccacccaggttgaattctatggtttccatct 50632528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 49841572 - 49841503
Alignment:
Q  50 gtctcgtcttaccatacatccaacacaatatcatcatctatgttatacttaatctattttcgtgttggtt 119  Q
    |||| ||||||| | ||||||||||||| ||| ||||||||| || ||||||| ||||||| ||||||||    
T  49841572 gtctagtcttactacacatccaacacaacatcctcatctatgctacacttaatttattttcttgttggtt 49841503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 357
Target Start/End: Complemental strand, 29817280 - 29817161
Alignment:
Q  237 ctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgtaactt 336  Q
    |||||||||||||||| ||||||||| | ||| ||||||||| |    | || ||| | |||||||||||| | ||  | |||||| |||||||||||||    
T  29817280 ctctatttcaaccacccaacttgaatacgatgatttacatctgccgttatttatccgtcattttgtactatggtcaa-agatatttgaaccgtgtaactt 29817182  T
Q  337 gtgatatgatatgatctccaa 357  Q
     || |||||||||||||||||    
T  29817181 atggtatgatatgatctccaa 29817161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 30345323 - 30345267
Alignment:
Q  217 ataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggttta 273  Q
    |||||||||||||||| || ||| |||||||||||| ||||||||| ||||| ||||    
T  30345323 ataaaacacctgagactcttctccatttcaaccacccaacttgaatactatgattta 30345267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 52138524 - 52138484
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  52138524 atatttaaaccgtgtaacttggggtatgatatgatctccaa 52138484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 281
Target Start/End: Complemental strand, 805712 - 805634
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcct 281  Q
    ||||||| ||||| |||||| |||| |  ||||||||||||||||||||| | |||  |||||||| |||||| |||||    
T  805712 tactttcacatcacataaaatacctaatgcactcctctatttcaaccacccatcttagattctatgatttacaactcct 805634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 351
Target Start/End: Complemental strand, 9258575 - 9258541
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgat 351  Q
    ||||||||||||||||||||| |||||||||||||    
T  9258575 atatttaaaccgtgtaacttgggatatgatatgat 9258541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 24302013 - 24302062
Alignment:
Q  227 tgagacactcctctatttcaaccacctaacttgaattctatggtttacat 276  Q
    |||| |||| |||||||| ||||||||||||| ||||||||| |||||||    
T  24302013 tgaggcacttctctattttaaccacctaacttaaattctatgatttacat 24302062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 1448078 - 1448134
Alignment:
Q  196 tgagtaatactttcgcatcatataaaacacctgagacactcctctatttcaaccacc 252  Q
    |||||| ||||||||||||| |||||||||  ||| || ||||| ||||||||||||    
T  1448078 tgagtagtactttcgcatcacataaaacacacgaggcattcctccatttcaaccacc 1448134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 19736862 - 19736822
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||| ||||||||| | |||||||||||||||||    
T  19736862 atatttaaaccatgtaacttggggtatgatatgatctccaa 19736822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 219 - 420
Target Start/End: Complemental strand, 3394504 - 3394303
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | |  ||| |||||||||||| | ||||||| | ||| ||||||||| || | | |||||| | |||||||||||| ||| | | ||    
T  3394504 aaaacacctgaggctcatctccatttcaaccacccagcttgaatacgatgatttacatctgcttctatttctccgtcattttgtactatggacccaagat 3394405  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaaattaaattctatatactccgtc 418  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  ||||| ||  ||||  |  ||| ||||||||| ||||| |||| |||||||| |||    
T  3394404 atttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacccacttctccttttgctgaattacattccatatactctgtc 3394305  T
Q  419 tt 420  Q
    ||    
T  3394304 tt 3394303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 219 - 367
Target Start/End: Original strand, 12492875 - 12493023
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  12492875 aaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 12492974  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctc 367  Q
    ||||||||||||||||||| | ||||||||||||||||| || ||||||    
T  12492975 atttaaaccgtgtaacttggggtatgatatgatctccaacttttacctc 12493023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 354
Target Start/End: Complemental strand, 21915696 - 21915545
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgt 302  Q
    |||||| |||||  |||||||| ||||| |||||||| |||||||| ||| |||||| | || ||||||||  | |||| | | |||| | |||||||||    
T  21915696 tacttttgcatcgcataaaacatctgaggcactcctccatttcaactacccaacttggactcaatggtttaattttccttctatttcttcgttattttgt 21915597  T
Q  303 actatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctc 354  Q
    ||||| ||  | ||||||||||||||||||||||||  |||||||| |||||    
T  21915596 actattgaaccaatatatttaaaccgtgtaacttgtattatgatataatctc 21915545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 3301643 - 3301505
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | |  |||||||||||||||| | ||||||| | ||| ||| ||||| || | | |||||| | |||| ||||||| ||| | | ||    
T  3301643 aaaacacctgaggctcatctctatttcaaccacccagcttgaatacgatgatttgcatctgcttctatttctccttcatttggtactatggacccaagat 3301544  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  3301543 atttaaaccgtgtaacttggggtatgatatgatctccaa 3301505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 16347891 - 16348028
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||||| ||||||| | ||| |||||||   ||   | |||||| | |||||||||||| ||||| | ||    
T  16347891 aaaacacctgaggctcttctccatttcaaccaccta-cttgaatacgatgatttacatacgcttttatttctccgtcattttgtactatggacacaagat 16347989  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  16347990 atttaaaccgtgtaacttggggtatgatatgatctccaa 16348028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 1288077 - 1288215
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    ||||||| |||| | || ||| |||||||||| | ||||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  1288077 aaaacacatgaggctcttctccatttcaaccatccaacttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggactcaagat 1288176  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  1288177 atttaaaccgtgtaacttggggtatgatatgatctccaa 1288215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 2075962 - 2076100
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||  |||||||||||| ||||||||| | |||| |||||||| || | | |||||  | ||||||||| |  ||| | | ||    
T  2075962 aaaacacctgaggctcttcttcatttcaaccacccaacttgaatacgatggcttacatctgcttctatttctctgtcattttgtacgaaggacccaagat 2076061  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  2076062 atttaaaccgtgtaacttggggtatgatatgatctccaa 2076100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 20318785 - 20318647
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | |||||||   |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  20318785 aaaacacctgaggctcttctccatttcaaccacccagcttgaatatgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 20318686  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  20318685 atttaaaccgtgtaacttggggtatgatatgatctccaa 20318647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 357
Target Start/End: Complemental strand, 1275037 - 1274921
Alignment:
Q  241 atttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtga 340  Q
    |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||||||||||||||||||||| |     
T  1275037 atttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagatatttaaaccgtgtaacttgggg 1274938  T
Q  341 tatgatatgatctccaa 357  Q
    |||||||||||||||||    
T  1274937 tatgatatgatctccaa 1274921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 10639091 - 10638953
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    ||||||||| || | || ||| |||||||||||| | ||||||| | |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  10639091 aaaacacctaaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 10638992  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | ||||||||||| |||||    
T  10638991 atttaaaccgtgtaacttggggtatgatatgatttccaa 10638953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 15370739 - 15370812
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacat 276  Q
    |||||| |||||| |||||| |  ||||||||||||| ||||||||||| || ||||||||| |||||||||||    
T  15370739 tacttttgcatcacataaaatatttgagacactcctccatttcaaccacttagcttgaattcaatggtttacat 15370812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 398
Target Start/End: Original strand, 43558400 - 43558481
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaaat 398  Q
    ||||||||| ||||||||||||| |||| |||||||||||| ||  |||||| | ||||||||  || ||||||||||||||    
T  43558400 atatttaaatcgtgtaacttgtggtatgctatgatctccaactttcacctctgagctagaaacactttgccttttgctaaat 43558481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 397
Target Start/End: Original strand, 6368491 - 6368591
Alignment:
Q  297 ttttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaa 396  Q
    |||||||||||||| || | |||||||||  |||||||||||| |||| |||||||||||  ||  ||||||| | |||||| ||||| ||| |||||||    
T  6368491 ttttgtactatagatacaagatatttaaattgtgtaacttgtggtatgttatgatctccatctttcacctctacattagaaatgtttcacctcttgctaa 6368590  T
Q  397 a 397  Q
    |    
T  6368591 a 6368591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 370
Target Start/End: Original strand, 28977345 - 28977496
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||| ||| | || ||| |||||||||||| | ||||||| | |||| |||||||| || | | | |||| | ||||||||| |  ||| | | ||    
T  28977345 aaaacacccgaggctcttctccatttcaaccacccagcttgaatacgatggcttacatctacttctattactccgtcattttgtacgaaggacccaagat 28977444  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaa 370  Q
    ||||||||||||| ||||| | ||||||||||||||||| ||  ||||||||    
T  28977445 atttaaaccgtgtgacttggggtatgatatgatctccaactttcacctctaa 28977496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 24178318 - 24178180
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    ||||||| |||| | || ||| |||||||||||| |||||||||   |||| |||||||| || | | |||||| | ||||||||| |  ||| | | ||    
T  24178318 aaaacacttgaggctcttctccatttcaaccacccaacttgaatatgatggcttacatctgcttctatttctccgtcattttgtacgaaggacccaagat 24178219  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
     |||||||||||||||||  | |||||||||||||||||    
T  24178218 ctttaaaccgtgtaacttagggtatgatatgatctccaa 24178180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 16134505 - 16134570
Alignment:
Q  55 gtcttaccatacatccaacacaatatcatcatctatgttatacttaatctattttcgtgttggttc 120  Q
    ||||||||||||||||||||||| ||| |||| |||| |||||||| | ||| || ||||||||||    
T  16134505 gtcttaccatacatccaacacaacatcctcatttatgctatacttactatatgtttgtgttggttc 16134570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 357
Target Start/End: Original strand, 38578976 - 38579127
Alignment:
Q  203 tactttcgcatcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgt 302  Q
    |||||| | |||| ||||||||| |||| |||||||| |||||||||||  | |||| |||| || |||||||||| ||     ||  || | |||||||    
T  38578976 tacttttgtatcacataaaacacatgaggcactcctccatttcaaccactcagcttggattcgatcgtttacatcttctgt---tttcccgtcattttgt 38579072  T
Q  303 actatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||  || | | |||||||||| |||||||||||| ||| |||||||||||||    
T  38579073 actatcaactcaagatatttaaactgtgtaacttgtgctataatatgatctccaa 38579127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 27998394 - 27998315
Alignment:
Q  40 attctatattgtctcgtcttaccatacatccaacacaatatcatcatctatgttatacttaatctattttcgtgttggtt 119  Q
    ||||||| |||||| ||||||||| ||||||||| ||| ||| |||||| || ||| ||||||  | |||||||||||||    
T  27998394 attctattttgtctagtcttaccacacatccaacgcaacatcctcatctctgatatgcttaattcactttcgtgttggtt 27998315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 414
Target Start/End: Original strand, 17341757 - 17341885
Alignment:
Q  287 ttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgc 386  Q
    ||||| || ||||| |||||| ||| | ||||||||||||| ||||| ||  | ||||||||||||||||| ||  ||||| ||  ||||| | ||| ||    
T  17341757 ttctctatcattttctactatggacccaatatatttaaaccatgtaatttcaggtatgatatgatctccaacttccacctccaaggtagaaccatttggc 17341856  T
Q  387 cttttgctaaa-ttaaattctatatactc 414  Q
    ||||| ||||| ||| |||| ||||||||    
T  17341857 ctttttctaaagttacattccatatactc 17341885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 27302513 - 27302573
Alignment:
Q  297 ttttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||| ||| ||||| | ||||||||||||||||  ||| | |||||||||||||||||    
T  27302513 ttttgtattatggacacaagatatttaaaccgtgtagtttgaggtatgatatgatctccaa 27302573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 9706570 - 9706432
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||  | || ||| |||||||||||| | ||||||| | ||| |||||| || || | | |||||||| ||||||||| || ||| | | ||    
T  9706570 aaaacacctgatgctcttctccatttcaaccacccagcttgaatacgatgatttacacctgcttctatttctccatcattttgtaccatggacccaagat 9706471  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  9706470 atttaaaccgtgtaacttggggtatgatatgatctccaa 9706432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 354
Target Start/End: Complemental strand, 5631612 - 5631476
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccata- 317  Q
    |||||||| ||||| || ||| |||||||||||| | ||||||| | ||| ||||||||| || | | |||||| | |||||||||||| ||| | | |     
T  5631612 aaaacacccgagactcttctccatttcaaccacccagcttgaatacgatgatttacatctgcttctatttctccgtcattttgtactatggacccaaaaa 5631513  T
Q  318 tatttaaaccgtgtaacttgtgatatgatatgatctc 354  Q
    |||||||||||||||||||| | ||||||||||||||    
T  5631512 tatttaaaccgtgtaacttggggtatgatatgatctc 5631476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 5258638 - 5258776
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    ||||||| |||| | || ||| |||||||||||| | ||||||| | ||| | ||||||  || | | |||||| | |||||||||||| ||| | | ||    
T  5258638 aaaacacatgaggctcttctccatttcaaccacccagcttgaatacgatgatgtacatcagcttctatttctccgtcattttgtactatggacccaagat 5258737  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||| |||||||||| | |||||||||||||||||    
T  5258738 atttaaactgtgtaacttggggtatgatatgatctccaa 5258776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 213 - 311
Target Start/End: Complemental strand, 7079934 - 7079836
Alignment:
Q  213 tcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagac 311  Q
    ||||||||| |||||||| |||| ||  |||||||||| | | |||||||| ||||||||| || |||| ||| ||||||||  |||||||||||||||    
T  7079934 tcatataaagcacctgaggcactacttaatttcaaccatccagcttgaattttatggtttagatttccttcaatttctccatcgttttgtactatagac 7079836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 20428124 - 20428262
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||| ||| | || ||| |||||||||||| | |||| || | ||| ||||||||| || | | || ||| |  ||||||||| | ||| | ||||    
T  20428124 aaaacacccgaggctcttctccatttcaaccacccagcttggatacgatgatttacatctgcttctatttttccgtcgttttgtactgtggacccaatat 20428223  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  20428224 atttaaaccgcgtaacttgtggtatgatatgatctccaa 20428262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 357
Target Start/End: Original strand, 10100422 - 10100483
Alignment:
Q  296 attttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||||||||| ||| | | ||||||||||||||||||||| | |||||||||||||||||    
T  10100422 attttgtactatggacccaagatatttaaaccgtgtaacttggggtatgatatgatctccaa 10100483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 2689372 - 2689313
Alignment:
Q  297 ttttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctcca 356  Q
    ||||||||||||||| | | ||||||||||||||||||||  | ||||||||||||||||    
T  2689372 ttttgtactatagacccaaaatatttaaaccgtgtaacttagggtatgatatgatctcca 2689313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 6641914 - 6641988
Alignment:
Q  235 tcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatag 309  Q
    ||||| |||||||||||| ||||| ||||| |||||||||||||||| | | |||||  | ||||||||||||||    
T  6641914 tcctccatttcaaccacccaactttaattcaatggtttacatctccttctatttctctctcattttgtactatag 6641988  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 385
Target Start/End: Original strand, 8811940 - 8812030
Alignment:
Q  295 tattttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcg 385  Q
    |||||||||||||||||   | |||||||||   ||||||||||| ||||||||||||| |||| |  |||| |||| |||||||| ||||    
T  8811940 tattttgtactatagacttgagatatttaaattttgtaacttgtggtatgatatgatcttcaatgttcacctgtaaattagaaacgcttcg 8812030  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 300
Target Start/End: Original strand, 19338459 - 19338547
Alignment:
Q  212 atcatataaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattatttt 300  Q
    |||| |||||||||| ||  | |||||  |||||| | ||||||||||||| ||||| ||||||||||| || | |||||||| |||||    
T  19338459 atcacataaaacacccgaagctctcctgcatttcatctacctaacttgaatcctatgatttacatctccccctatttctccatcatttt 19338547  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 20834380 - 20834440
Alignment:
Q  55 gtcttaccatacatccaacacaatatcatcatctatgttatacttaatctattttcgtgtt 115  Q
    |||||| || ||||||||||||||||| ||||||| |||||| ||| | |||| |||||||    
T  20834380 gtcttatcacacatccaacacaatatcctcatctacgttatatttattttattctcgtgtt 20834440  T

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Target: scaffold0606 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 397
Target Start/End: Complemental strand, 9353 - 9273
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcgccttttgctaaa 397  Q
    ||||||||| |||||||||  | |||||||||||||||||| || ||||||||||||||||||  ||| ||||||||||||    
T  9353 atatttaaatcgtgtaactaataatatgatatgatctccaacttttacctctaaactagaaacaattcaccttttgctaaa 9273  T

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Target: scaffold0024 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 357
Target Start/End: Complemental strand, 82489 - 82377
Alignment:
Q  245 caaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtgatatg 344  Q
    |||||||| | ||||||| | ||| ||||||||| || | | |||||| | ||||| |||||| ||| | | ||||||||||||||||||||||| ||||    
T  82489 caaccacccagcttgaatacgatgatttacatctgcttctatttctccgtcattttttactatggacccaagatatttaaaccgtgtaacttgtggtatg 82390  T
Q  345 atatgatctccaa 357  Q
    |||| ||||||||    
T  82389 atataatctccaa 82377  T

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Target: scaffold0570 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 2758 - 2896
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    |||||||||||| | || ||| |||||||||||| | ||||||| | |||  |||||||| || | | |||| | | ||||||||| |  ||| | | ||    
T  2758 aaaacacctgaggctcttctccatttcaaccacccagcttgaatacgatgacttacatctgcttctatttcttcgtcattttgtacgaaggacccaagat 2857  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  2858 atttaaaccgtgtaacttggggtatgatatgatctccaa 2896  T

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Target: scaffold0113 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 357
Target Start/End: Original strand, 12154 - 12224
Alignment:
Q  287 ttctccattattttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    |||||| | |||||||||||| ||| | | ||||||||||| ||||||||| | |||||||||||||||||    
T  12154 ttctccgtcattttgtactatggacccaagatatttaaaccatgtaacttggggtatgatatgatctccaa 12224  T

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Target: scaffold0171 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 5888 - 5848
Alignment:
Q  317 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  5888 atatttaaaccgtgtaacttggggtatgatatgatctccaa 5848  T

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Target: scaffold0896 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 385
Target Start/End: Original strand, 4386 - 4476
Alignment:
Q  295 tattttgtactatagacaccatatatttaaaccgtgtaacttgtgatatgatatgatctccaatttgtacctctaaactagaaacgtttcg 385  Q
    |||||||||||||||||   | |||||||||   ||||||||||| ||||||||||||| |||| |  |||| |||| |||||||| ||||    
T  4386 tattttgtactatagacttgagatatttaaattttgtaacttgtggtatgatatgatcttcaatgttcacctgtaaattagaaacgcttcg 4476  T

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Target: scaffold0018 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 31262 - 31124
Alignment:
Q  219 aaaacacctgagacactcctctatttcaaccacctaacttgaattctatggtttacatctcctccaacttctccattattttgtactatagacaccatat 318  Q
    ||||||| |||| | || ||| |||||||||||| | ||||||| | ||||  ||||||| ||   | |||||| | ||||||||| |  ||| | | ||    
T  31262 aaaacacttgaggctcttctccatttcaaccacccagcttgaatacgatggcctacatctacttttatttctccgtcattttgtacgaaggacccaagat 31163  T
Q  319 atttaaaccgtgtaacttgtgatatgatatgatctccaa 357  Q
     |||||||||||||||||| | |||||||||||||||||    
T  31162 gtttaaaccgtgtaacttggggtatgatatgatctccaa 31124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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