View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20175_low_15 (Length: 437)
Name: NF20175_low_15
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20175_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 167 - 426
Target Start/End: Complemental strand, 5114443 - 5114184
Alignment:
| Q |
167 |
aaatgcctttatcggtgatgacctctactctatcaccctatatcacttaataatctataaagttgcccgtacactaccccatttcatcaccctctttagt |
266 |
Q |
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| T |
5114443 |
aaatgcctttatcggtgatgacctctactctatcaccctatatcacttaataatctataaagttgcccgtacactaccccatttcatcaccctctttagt |
5114344 |
T |
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| Q |
267 |
taggtttttaatataataattgtgatttcatcatcctctataacttgcttaaagttttggttgagatgtaacgacttagatcatctttaatggtgacatc |
366 |
Q |
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| T |
5114343 |
taggtttttaatatgataattgtgatttcatcatcctctataacttgcttaaagttttggttgagatgtaacgacttagaccatcttcaatagtgacatc |
5114244 |
T |
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| Q |
367 |
ttcactatttaaaattcggtatctaataattatttcattaagaaattttttcatctcact |
426 |
Q |
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|||||||||||||||| | ||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
5114243 |
ttcactatttaaaatttgatatctaataattacttcattaaggaattttttcatctcact |
5114184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 5114591 - 5114489
Alignment:
| Q |
19 |
aaaaggagacagtttctgattgaaggaaaaagacagcgtgagcaaaccaatggtaatagtagagcttaggtgttttcatgcatgccaacctcaaccacac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5114591 |
aaaaggagacagtttctgattgaaggaaaaagacagcgtgagcaaaccaatggtaatagtagagcttaggtgttttcatgcatgccaacctcaaccacac |
5114492 |
T |
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| Q |
119 |
gcg |
121 |
Q |
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| T |
5114491 |
gcg |
5114489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 394
Target Start/End: Original strand, 8757231 - 8757280
Alignment:
| Q |
345 |
gatcatctttaatggtgacatcttcactatttaaaattcggtatctaata |
394 |
Q |
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| T |
8757231 |
gatcatctttaatggtgaggtcttcgccatttaagattcggtatctaata |
8757280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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