View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20175_low_16 (Length: 423)
Name: NF20175_low_16
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20175_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 48633289 - 48632880
Alignment:
| Q |
1 |
caagatatgataaccactaagtagtatcaacccgtgcatagacccattatgatgatatataataatgaacgacttttaagagggcacaaacacattattg |
100 |
Q |
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| T |
48633289 |
caagatatgataaccactaagtagtatcaacccgtgcatagacccattatgatgatatataataatgaacgacttttaagagggcacaaacacattattg |
48633190 |
T |
|
| Q |
101 |
tataattgaagtgtacgttaattcttgatattttgagttttgattcctaacgaccccacaattttttagtgcatttgtcctagctagagttccatcagct |
200 |
Q |
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| T |
48633189 |
tataattgaagtgtacgttaattcttgatattttgagttttgattcctaacgaccccacaattttttagtgcatttgtcctagctagagttccatcagct |
48633090 |
T |
|
| Q |
201 |
tccatatgctctatttgtatttttatattgtaatcacagtcacttatactatgcttacttcaatggagttgtagaagtttggtttttaaccttaaagtga |
300 |
Q |
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| T |
48633089 |
tccatatgctctatttgtatttttatattgtaatcacagtcacttatactatgcttacttcaatggagttgtagaagtttggtttttaaccttaaagtga |
48632990 |
T |
|
| Q |
301 |
atagaatagaatatcacacaagctgtatagtatttgtgatgatgagaccattttcggatgtcaatatgagcagattcctgacctgctatgccttgtttgt |
400 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48632989 |
atag-----aatatcacacaagcggtatagtatttgtgatgatgagaccattttcggatgtcaatatgagcagattcctgacctgctatgccttgtttgt |
48632895 |
T |
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| Q |
401 |
ctggttcttcatttc |
415 |
Q |
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|||||||||| |||| |
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| T |
48632894 |
ctggttcttcttttc |
48632880 |
T |
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