View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20175_low_17 (Length: 419)
Name: NF20175_low_17
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20175_low_17 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 37188323 - 37187906
Alignment:
| Q |
1 |
cttaattggtttctctttagcttttatgtttctagcaaaggtagcttaatttgtctaagctcttgttggtgaatgaaatgaaatatggggttatgttacg |
100 |
Q |
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| T |
37188323 |
cttaattggtttctctttagcttttatgtttctagcaaaggtagcttaatttgtctaagctcttgttggtgaatgaaatgaaatatggggttatgttacg |
37188224 |
T |
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| Q |
101 |
tatatatacacattgatgggttgtattttcttccaatttagttcttccttttcgtgtaaggattgatttatgtcaaggaaaatctcaaattgggtttccc |
200 |
Q |
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| T |
37188223 |
tatatatacacattgatgggttgtattttcttccaatttagttcttccttttcgtgtaaggattgatttatgtcaaggaaaatctcaaattgggtttccc |
37188124 |
T |
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| Q |
201 |
tgtaacaaaatatgtctctaaagaataccttacttatttgctaggcattgttgagtaacgttctttccccacatgcatgtaatattgattaagtttgtgc |
300 |
Q |
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| T |
37188123 |
tgtaacaaaatatgtctctaaagaataccttacttatttgctaggcattgttgagtaacgttctttccccacatgcatgtaatattgattaagtttgtgc |
37188024 |
T |
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| Q |
301 |
aaagttaaggatttaatttccaaccgttctttggtgagggttttgtattattcttctcaatattatctttaaacaataacaatattctccctgttaacaa |
400 |
Q |
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| T |
37188023 |
aaagttgaggatttaatttccaactgttctttggtgagggttttgtattattcttctcaatattatctttaaacaataac-atattctccccgttaacaa |
37187925 |
T |
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| Q |
401 |
agtttgcaagtcaaccttt |
419 |
Q |
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| T |
37187924 |
agtttgcaagtcaaacttt |
37187906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 37893220 - 37892795
Alignment:
| Q |
1 |
cttaattggtttctctttagcttttatgtttctagcaaaggtagcttaatttgtctaagctcttgttggtgaatgaaatgaaatatggggttatgttacg |
100 |
Q |
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| T |
37893220 |
cttaattggtttctctttagcttttatgtttctagcaaaggtagcttaatttgtctaagctcttgttggtgaatgaaatgaaatatggggttatgttacg |
37893121 |
T |
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| Q |
101 |
tatatatacacattgatgggttgtattttcttccaatttagttcttccttttcgtgtaaggattgatttatgtcaaggaaaatctcaaattgggtttccc |
200 |
Q |
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| T |
37893120 |
tatatatacacattgatgggttatattttcttccaatttagttcttccttttcgtgtaaggattgatttatgtcaaggaaaatctcaaattgggtttccc |
37893021 |
T |
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| Q |
201 |
tgtaacaaaatatgtctctaaagaataccttacttatttgctaggcattgttgagtaacgttctttccccacatgcatgtaatattgattaagtttgtgc |
300 |
Q |
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| T |
37893020 |
tgtaacaaaatatgtctctaaagaataccttacttatttgctaggcattgtttagtcacgttctttctccacatgcatgtaatattgattaagtttgtgc |
37892921 |
T |
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| Q |
301 |
aaagttaaggatttaatttc-------caaccgttctttggtgagggttttgtattattcttctcaatattatctttaaacaataacaatattctccctg |
393 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37892920 |
aaagttaaggatttaatttccaacttccaactgttctttggtgagggttttgtattattcttctcaatattatctttaaacaataacaatattctccctg |
37892821 |
T |
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| Q |
394 |
ttaacaaagtttgcaagtcaaccttt |
419 |
Q |
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| T |
37892820 |
ttaacaaagtttgcaagtcaaccttt |
37892795 |
T |
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