View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20175_low_18 (Length: 407)
Name: NF20175_low_18
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20175_low_18 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Original strand, 4571123 - 4571513
Alignment:
| Q |
18 |
aatacgacataaacttttgagtatgccaccagatcttgttagacttttaaaaaatgtcataccatacattctttaaaaaagaaaatatcatagacaaaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4571123 |
aatacgacataaacttttgagtatgccaccagatcttgttagacttttaaaaaatgtcataccatacattctttaaaaaagaaaatatcatagacaaaca |
4571222 |
T |
|
| Q |
118 |
atgatttaannnnnnnn-aagagacactattttcnnnnnnnagagtaggatattaatttaatcttgttaataataattttcccatatttatacgggacag |
216 |
Q |
| |
|
||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4571223 |
atgatttaatttttttttaagagacactattttctttttttagaggaggatattaatttaatcttgttaataataattttcccatatttatacgggacag |
4571322 |
T |
|
| Q |
217 |
agatactctcacatataaaataatcatttctgctatctttacttttaaatgacccaagagatcaatcaatacaacacaatatcaaaatcataaaattgga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4571323 |
agatactctcacatataaaataatcatttctgctatctttacttttaaatgacctaagagatcaatcaatacaacacaatatcaaaatcataaaattgga |
4571422 |
T |
|
| Q |
317 |
gtacatagcccggttttacattcattacccacatgcaaagatgggacgattttacaatcatatcacttaacttggccatacataagggaaa |
407 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4571423 |
gtacatagcccggttttacattcattatccacatgcaaagatgggacgattttacaatcatatcacttaacttggccatacataagggaaa |
4571513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University