View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20175_low_20 (Length: 356)
Name: NF20175_low_20
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20175_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 61 - 349
Target Start/End: Original strand, 3335968 - 3336256
Alignment:
| Q |
61 |
aatttcaatttatgaattcggacatgatggagacttaagaatgctacttgttttcaatttcactgtcctacattgacaataacaaaaaccattcgaatag |
160 |
Q |
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| T |
3335968 |
aatttcaatttatgaattcggacatgatggagacttaagaatcctacttgttttcaatttcactgtcctacattgacaataacaaaaaccattcgaatag |
3336067 |
T |
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| Q |
161 |
tgaaagtttaaattaataattggaatatatacacacgtgtttacgatttgataaaatttaaaagaatgttcaccgttgacaatcattttcaaagtacata |
260 |
Q |
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| T |
3336068 |
tgaaagtttaaattaataattggaatatatacacacgtgtttacgatttgataaaatttaaaagaatgttcaccgttgacaatcattttcaaagtacata |
3336167 |
T |
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| Q |
261 |
tattagcaaaatgtgttcactgcaattggatccaattatggtgaagaagtgttgggggtaannnnnnnaagggttaaatatattcttgg |
349 |
Q |
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| T |
3336168 |
tattagcaaaatgtgttccctgcaattggatccaattatggtgaagaagtgttgggggtaatttttttaagggttaaatatatttttgg |
3336256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 3335900 - 3335953
Alignment:
| Q |
20 |
gttctcataagtcattatggactattattcgtataggagacaatttcaatttat |
73 |
Q |
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| T |
3335900 |
gttctcatatgtcattatggacttctatccgtataggaggcaatttcaatttat |
3335953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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