View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20175_low_24 (Length: 325)
Name: NF20175_low_24
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20175_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 307
Target Start/End: Original strand, 46462006 - 46462294
Alignment:
| Q |
17 |
cagtgagactaacaaataatctagtcctcagannnnnnnnnnnnnctgttctatttagttcttaagttttgcattgtaacattaaggctaggaattatta |
116 |
Q |
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| T |
46462006 |
cagtgagactaacaaataatctagtcctcagaatatata------ctgttctatttagttcttaagttttgccttgtaacattaaggctaggaattatta |
46462099 |
T |
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| Q |
117 |
tcaatggctgtatcatcttaccaatctatcatgtcaagctcaatgaccaccatttctagcaggtctagagttaaccaaatcagtaacatcc---ctgtgt |
213 |
Q |
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| T |
46462100 |
tcaatggctgtatcatcttaccaatctatcatgtcaagctcaatgaccaccatttctagcaggtctagagttaaccaaatcagtaacatcccttctgtgt |
46462199 |
T |
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| Q |
214 |
acatgcctagctttagaaggaatgctagcttcaaagttcgatccatggctgaggtaatgttttagaaaacaaaa-tttaaggttgcatatattta |
307 |
Q |
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| T |
46462200 |
acatgcctagctttagaaggaatgctagcttcaaagttcgatccatggctgaggtaatgttttagaaaacaaaattttaaggttgcatatattta |
46462294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 114 - 302
Target Start/End: Original strand, 46451149 - 46451342
Alignment:
| Q |
114 |
ttatcaatggctgtatcatcttaccaatctatcatgtcaagctcaatgacca---ccatttctagcaggtctagagttaaccaaatcagtaacatccct- |
209 |
Q |
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| T |
46451149 |
ttatcaatggctgtttcatcttatcaatctatcatgtctagctccattaccagcaccatttctagcaggcctagagttaaccaatttaacaacatccctt |
46451248 |
T |
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| Q |
210 |
--gtgtacatgcctagctttagaaggaatgctagcttcaaagttcgatccatggctgaggtaatgttttagaaaacaaaatttaaggttgcatat |
302 |
Q |
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| T |
46451249 |
ctgtgtatatgcctagcttcagaagaaatgctagcctcaaagttcggtccatggctgaggtaatgtttttgaaaac-aaatttaaggttgcatat |
46451342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 114 - 302
Target Start/End: Complemental strand, 46345519 - 46345325
Alignment:
| Q |
114 |
ttatcaatggctgtatcatcttaccaatctatcatgtcaagctcaatgac---caccatttctagcaggtctagagttaaccaaatcagtaacatccct- |
209 |
Q |
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|||||||||||||| |||||||| |||||||||||||| ||||| || || || ||||||||||||| |||||||||||||| | | ||||||||| |
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| T |
46345519 |
ttatcaatggctgtttcatcttatcaatctatcatgtctagctccattactagcatcatttctagcaggcctagagttaaccaatttaacaacatccctt |
46345420 |
T |
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| Q |
210 |
--gtgtacatgcctagctttagaaggaatgctagcttcaaagttcgatccatggctgaggtaatgttttagaaaacaaaatttaaggttgcatat |
302 |
Q |
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| T |
46345419 |
ctgtgtatatgcctagcttcagaagaaatgctagcctcaaagttcggtccatggctgaggtaatgttgtaggaaacaaaatttaagggtgcatat |
46345325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 114 - 271
Target Start/End: Original strand, 46470699 - 46470862
Alignment:
| Q |
114 |
ttatcaatggctgtatcatcttaccaatctatcatgtcaagctcaatgac---caccatttctagcaggtctagagttaaccaaatcagtaacatccct- |
209 |
Q |
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|||||||||||||| |||||||| |||||||||||||| ||||| || || || ||||||||||||| |||||||||||||| | | ||||||||| |
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| T |
46470699 |
ttatcaatggctgtttcatcttatcaatctatcatgtctagctccattacaagcagcatttctagcaggcctagagttaaccaatttaacaacatccctt |
46470798 |
T |
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| Q |
210 |
--gtgtacatgcctagctttagaaggaatgctagcttcaaagttcgatccatggctgaggtaat |
271 |
Q |
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| T |
46470799 |
ctgtgtatatgcctagctttaaaaggaatgctagcttgaaagttcgatctatggctgaggtaat |
46470862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 115 - 271
Target Start/End: Original strand, 46465514 - 46465664
Alignment:
| Q |
115 |
tatcaatggctgtatcatcttaccaatctatcatgtcaagctcaatgaccaccatttctagcaggtctagagttaaccaaatcagtaacatcc---ctgt |
211 |
Q |
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| T |
46465514 |
tatcaatggctgtatcatcttatcaatctatcatgtcaagctccatgacc---------agcaggcctagagttacccgacttaacaacatcccttctgt |
46465604 |
T |
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| Q |
212 |
gtacatgcctagctttagaaggaatgctagcttcaaagttcgatccatggctgaggtaat |
271 |
Q |
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| T |
46465605 |
gtatatgcctagcttcagaagaaatgctaacctcaaagttcggtccatggctgaggtaat |
46465664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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