View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20175_low_25 (Length: 316)
Name: NF20175_low_25
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20175_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 49689025 - 49688725
Alignment:
| Q |
1 |
taagtatcaatattgtagaatataggtgtaattctgctgtggttaaatatttactgtaacagctttatattatgcttttggataaaacataaaggaaatg |
100 |
Q |
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| T |
49689025 |
taagtatcaatattgtagaatataggtgcaattctgctgtggttaaatatttacggtaacagctttatattatgcttttggataaaacataaaggaaatg |
49688926 |
T |
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| Q |
101 |
tgctaacatgttaattttgaagtttagtatccattcttgaattggtcaatcggctcaaagaatcactagttagaaacttgcatctatgagaactacgaag |
200 |
Q |
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| T |
49688925 |
tgctaacatgttaattttgaagtttagcatccattcttgaattggtcaatcggctcaaagaatcactagttagaaacttgcatctatgagaactacgaag |
49688826 |
T |
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| Q |
201 |
caaaccaaaataagttacgctaaattcaaaaatgaaatcttgtagaaaactgcagagaaacaaaattctagtgataaatgcaattataaggacacatgtt |
300 |
Q |
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| T |
49688825 |
caaaccaaaataagttacgctaaattcaaaaatgaaatcttgtagaaatctgcagagaaacaaaattctagtgatcaatgcaattataaggacacatgtt |
49688726 |
T |
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| Q |
301 |
t |
301 |
Q |
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| |
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| T |
49688725 |
t |
49688725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 291
Target Start/End: Complemental strand, 49711479 - 49711438
Alignment:
| Q |
250 |
ctgcagagaaacaaaattctagtgataaatgcaattataagg |
291 |
Q |
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| T |
49711479 |
ctgcagagaaataaaattctagtgataattgcaatcataagg |
49711438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 49684475 - 49684391
Alignment:
| Q |
101 |
tgctaacatgttaattttgaagtttagtatccattcttgaattggtcaa-tcggctcaaagaatcactagttagaaacttgcatc |
184 |
Q |
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| T |
49684475 |
tgctaatatgtaaatttcgaagttcagtatccagttttgaattggtcaattcgactcaaagaattatcagtcaggaacttgcatc |
49684391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 20059557 - 20059505
Alignment:
| Q |
95 |
gaaatgtgctaacatgttaattttgaagtttagtatccattcttgaattggtc |
147 |
Q |
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| T |
20059557 |
gaaatatgctaacatgttaattttgaagttcagtatccagtcttgaatcggtc |
20059505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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