View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20175_low_3 (Length: 614)
Name: NF20175_low_3
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20175_low_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 1 - 614
Target Start/End: Original strand, 25792236 - 25792868
Alignment:
| Q |
1 |
ttcattagaact-aaagagtgtccaccacatacgaacaccggatacaacacatacatttagacaccgatagtaatttaagaaaatataagtgaatcagtg |
99 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25792236 |
ttcattagaacttaaagagtgtccaccacatacgaacaccggatacaacacatacatttagacactgatagtaatttaagaaaatataagtgaatcagtg |
25792335 |
T |
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| Q |
100 |
attgaaagtaa-------------------tcaaacattgacatgtgtcggacaccagacccatctttaatgtgaagtgtcggtgctatatactaatcga |
180 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| || |
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| T |
25792336 |
attgaaagtaaccacgcacacgtgtcaatatcagacattgacatgtgtcggacaccagacacat-tttaatgtgaagtgtcggtgctacatactaattga |
25792434 |
T |
|
| Q |
181 |
taggtgttatgtgtatggcaaagtatgtggaccaatatgaaatatgattgtagttatatacataccatgaccctttccaacccttctcaattgagacaca |
280 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25792435 |
taggtgttatgtgtatggcaaaatatgtggaccaatatgaaatatgattgtagttatatacataccatgaccctttccaacccttctcaattgagacaca |
25792534 |
T |
|
| Q |
281 |
tactctgatatcttcttaattgattcaacctgaagaaagaatattaccaaaaatgttaccaaaaaatatgaattcctaacatcgttaaagcaactttttc |
380 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25792535 |
tactctgatatcttcttaattgattcaacctgatgaaagaatattaccaaaaatgttaccaaaaaatatgaattcctaacattgttaaagcaactttttc |
25792634 |
T |
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| Q |
381 |
tcatttttctaaattccaaaagtttatatgaattcataatactttgatttaaatgagttttacctgttcacccagaaattcatgttcaatgaagcttgtc |
480 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25792635 |
tcatttttctaaattccaaaagtttatatgaattcataatactttgatttaaatgagttttacctgttcacccagaaattcatgttcaatgaagcttgtc |
25792734 |
T |
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| Q |
481 |
atttgagggtcattgttgcggtccgccacctatttttcacaaatcttcaaaatgattagccttgacaactacagatcatataatttatgaattcctaaaa |
580 |
Q |
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| T |
25792735 |
atttgagggtcattgttgcggtccgccacctatttttcacaaatcttcaaaatgattagccttgacaactacagatcatataatttatgaattcctaaaa |
25792834 |
T |
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| Q |
581 |
atgtttacaacacagagctaaagggacaaagagg |
614 |
Q |
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| T |
25792835 |
atgtttacaacacagagctaaagggacaaagagg |
25792868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 236 - 312
Target Start/End: Complemental strand, 4113297 - 4113221
Alignment:
| Q |
236 |
atatacataccatgaccctttccaacccttctcaattgagacacatactctgatatcttcttaattgattcaacctg |
312 |
Q |
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||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4113297 |
atatacataccgtgaccctttccaactaatctcagttgagtcacatactctgatatcttcttaattgattcaacctg |
4113221 |
T |
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