View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20175_low_30 (Length: 282)
Name: NF20175_low_30
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20175_low_30 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 36394050 - 36394290
Alignment:
| Q |
16 |
aagaaatacaaaatacttataaaatgctcataaaaatgtacaatctcacctttttgggtattagaggatgccttagttaagtccctagccgaaacctctg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36394050 |
aagaaatacaaaatacttataaaatgctcatgaaaatgtacaatctcacctttttgggtattagaggatgcctcagttaagtccctagccgaaacctctg |
36394149 |
T |
|
| Q |
116 |
aggagataagaagaatgatagccaataggcttaggataaggatagcttttttcgaatccattgttcaatacttcaataccaattcaaatggaatatttgg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
36394150 |
aggagataagaagaatgatagccaatagacctaggataaggattgcttttttcgaatccattg--------ttcaataccaattcaaatgggatatttgg |
36394241 |
T |
|
| Q |
216 |
tatccaatgatgagaaaacttgtcagaaagtgtgctctatatataatgg |
264 |
Q |
| |
|
|| |||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
36394242 |
tagccaatgatgagaaaacttgtaagaaagtaagctctatatataatgg |
36394290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 90 - 264
Target Start/End: Original strand, 36493485 - 36493650
Alignment:
| Q |
90 |
agttaagtccctagccgaaacctctgaggagataagaagaatgatagccaataggcttaggataaggatagcttttttcgaatccattgttcaatacttc |
189 |
Q |
| |
|
||||||||||||||| || || |||||||| |||||||||| |||||||| |||| |||||| ||||| || |||||||||||||||| ||| |
|
|
| T |
36493485 |
agttaagtccctagcggacacttctgaggaaataagaagaaccatagccaagaggcctaggatgaggattgcctttttcgaatccattg--------ttc |
36493576 |
T |
|
| Q |
190 |
aataccaattcaaatggaatatttggtatccaatgatgagaaaacttgtcagaaagtgtgctctatatataatgg |
264 |
Q |
| |
|
|||| | |||||||| ||||||||||| || |||||||||||| || || |||||||||||||||||||||| |
|
|
| T |
36493577 |
aatatctgttcaaatgtaatatttggtagtgaacgatgagaaaactagtaag-aagtgtgctctatatataatgg |
36493650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 185
Target Start/End: Original strand, 36476338 - 36476433
Alignment:
| Q |
90 |
agttaagtccctagccgaaacctctgaggagataagaagaatgatagccaataggcttaggataaggatagcttttttcgaatccattgttcaata |
185 |
Q |
| |
|
|||||||||||| || || || ||||| || |||||||||| |||||||| |||| |||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
36476338 |
agttaagtccctggctgagacttctgaagaaataagaagaaccatagccaagaggcctaggatgaggattgcctttttcgaatccattgttcaata |
36476433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 36436815 - 36436865
Alignment:
| Q |
133 |
atagccaataggcttaggataaggatagcttttttcgaatccattgttcaa |
183 |
Q |
| |
|
||||||||||||| ||| || ||||| || ||||||||||||||||||||| |
|
|
| T |
36436815 |
atagccaataggcctagcatgaggattgcctttttcgaatccattgttcaa |
36436865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University