View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20175_low_36 (Length: 253)
Name: NF20175_low_36
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20175_low_36 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0094 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 31243307 - 31243066
Alignment:
| Q |
12 |
gaagaatatgtcgctgcaggaatctatgaaaaccaagccagggatcagtcaaatggtagtgaaacaaatgctggttcttcgttaccaaatactactccac |
111 |
Q |
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| T |
31243307 |
gaagaaaatgtcgctgcaggaatctatgaaaaccaagccagggatcagtcaaatggtagtgaaacaaatgctggttcttcgttaccaaatactactccac |
31243208 |
T |
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| Q |
112 |
ttcccaatccttggtcttttactggatgtaagttctaacactagaatatttttactcgacaataaacatctcttgttaacaaatttgttttttaaaaaat |
211 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31243207 |
ttcccaatccctggtcttttactggatgtaagttctaacactagaatattgttactcgacaattgacatctcttgttaacaaatttgttttttaaaaaat |
31243108 |
T |
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| Q |
212 |
atatttttaagtctgattattatagtaatttgtaactataaa |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
31243107 |
atatttttaagtctgattattatagtaatttgtaactataaa |
31243066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 82 - 253
Target Start/End: Complemental strand, 9948 - 9777
Alignment:
| Q |
82 |
ctggttcttcgttaccaaatactactccacttcccaatccttggtcttttactggatgtaagttctaacactagaatatttttactcgacaataaacatc |
181 |
Q |
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| T |
9948 |
ctggttcttcgttaccaaatactactccacttcccaatccttgatcttttacaggaagtaagttctaacactagaatattgttactcgacaatcgacata |
9849 |
T |
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| Q |
182 |
tcttgttaacaaatttgttttttaaaaaatatatttttaagtctgattattatagtaatttgtaactataaa |
253 |
Q |
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| T |
9848 |
ttttgttaacttatttgtttttaaaaaaatatgtttttaagtcttattattatagtaatttgtaactataaa |
9777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 108 - 253
Target Start/End: Original strand, 9958 - 10103
Alignment:
| Q |
108 |
ccacttcccaatccttggtcttttactggatgtaagttctaacactagaatatttttactcgacaataaacatctcttgttaacaaatttgttttttaaa |
207 |
Q |
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| T |
9958 |
ccacttcccaatccttgctcttttacaagaagtaagttctaacactagaatattgttactcgacaatcgacatctcttgttaacttatttctttttttaa |
10057 |
T |
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| Q |
208 |
aaatatatttttaagtctgattattatagtaatttgtaactataaa |
253 |
Q |
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| T |
10058 |
aattatctttttaagtctgattattatagtaatttgtaactataaa |
10103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 93 - 253
Target Start/End: Complemental strand, 17215236 - 17215076
Alignment:
| Q |
93 |
ttaccaaatactactccacttcccaatccttggtcttttactggatgtaagttctaacactagaatatttttactcgacaataaacatctcttgttaaca |
192 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||| | ||||||||||||| |
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| T |
17215236 |
ttaccaaatactcctccactccccaatccttggtcttttacaggaagtaagttctaacactagaatattgttactcgacaatcgatatctcttgttaact |
17215137 |
T |
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| Q |
193 |
aatttgttttttaaaaaatatatttttaagtctgattattatagtaatttgtaactataaa |
253 |
Q |
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| T |
17215136 |
tatttgttttttaaaaaatatctttttaagtctaattattatagtaatttgtaactataaa |
17215076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 100 - 253
Target Start/End: Original strand, 17215270 - 17215423
Alignment:
| Q |
100 |
atactactccacttcccaatccttggtcttttactggatgtaagttctaacactagaatatttttactcgacaataaacatctcttgttaacaaatttgt |
199 |
Q |
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||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||| ||| || | ||| |||||| |||||||| |||||| |
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| T |
17215270 |
atactactccactccccaatccttggtcttttacaggaagtaagttctaacactagaatattgttattcaaaaatcgacatctgttgttaacttatttgt |
17215369 |
T |
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| Q |
200 |
tttttaaaaaatatatttttaagtctgattattatagtaatttgtaactataaa |
253 |
Q |
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|||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
17215370 |
ttttcaaaaactatatttttaagtctaattattatagtaatttgaaactataaa |
17215423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 7206563 - 7206452
Alignment:
| Q |
12 |
gaagaatatgtcgctgcaggaatctatgaaaaccaagccagggatcagtcaaatggtagtgaaacaaatgctggttcttcgttaccaaatactactccac |
111 |
Q |
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|||||| |||||||||||||||||||||| | |||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7206563 |
gaagaaaatgtcgctgcaggaatctatgacagccaagccagggatcagtcaactagtagtgaaacaaatgctggttcttccttaccaaatactactccac |
7206464 |
T |
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| Q |
112 |
ttcccaatcctt |
123 |
Q |
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|||||||||||| |
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| T |
7206463 |
ttcccaatcctt |
7206452 |
T |
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