View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20175_low_4 (Length: 612)
Name: NF20175_low_4
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20175_low_4 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 523; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 17 - 612
Target Start/End: Original strand, 39554376 - 39554968
Alignment:
| Q |
17 |
atttttcaaacatcccacaatgctatggtgggtgccagtagtaattataggatttttgtaacagaagaacacaccaacatcaactgggggaagaattaaa |
116 |
Q |
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| T |
39554376 |
atttttcaaacatcccacaatgctatggtgggtggcagtagtaattataggatttttgtaacagaagaacacaccaacatcaactgggggaagaattaaa |
39554475 |
T |
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| Q |
117 |
tcaaggtttgatagtggaagccagtgctcttgcattggcagagcagcagccactatttctttgttggtaactttcacggtgaattctacttttccaatac |
216 |
Q |
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| T |
39554476 |
tcaaggtttgatagtggaagccagtgctcttgcattggcagagcagcagccactatttctttgttggtaactttcacggtgaattctccttttccaatac |
39554575 |
T |
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| Q |
217 |
acattttggggactagattaggagaatgtttcactactagtagttgagtatttgccttgtttggtgaataaggtagaagggtgcatgcatgtatttatag |
316 |
Q |
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| T |
39554576 |
acattttggggactagattaggagaatgtttcactactagtagttgagtatttgccttgtttggtgaataaggtagaagggtgcatgcatgtatttatag |
39554675 |
T |
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| Q |
317 |
aataacgtagagcaaggtgaatttggtaggtaggagcatttattttactattcagaatcaaagtcaatcttggtagcatgtgaaaagaagaattatatat |
416 |
Q |
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| T |
39554676 |
aataacgtagagcaaggtgaatttggtaggtaggagcatttattttactattcagaatcaaagtcaatcttggtagcatgtgaa---aagaattatatat |
39554772 |
T |
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| Q |
417 |
gggatattttgtttggagcctgtagggtagtcaaagaaattatgaacaatttggtgtgagnnnnnnnncttac-aaaaaacaatggcataatacgagtta |
515 |
Q |
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| T |
39554773 |
gggatattttgtttggagcttgtagggtagtcaaataaattatgaacaatttggtgtg-tttttttttcttacaaaaaaacaatggcataatacgagtta |
39554871 |
T |
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| Q |
516 |
ttagtcaactcttgggatttaagaaattttatttcactgttcataagaattatggtaattttagtagtgaacaaatataatcatatgctaattttct |
612 |
Q |
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| T |
39554872 |
ttagtcaactcttgggatttaagaaattttatttcactgttcataagaattatggtaattttagtagtgaacaaatataatcatatgctaattttct |
39554968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 39545062 - 39545295
Alignment:
| Q |
17 |
atttttcaaacatcccacaatgctatggtgggtgccagtagtaattataggatttttgtaacagaagaacacaccaacatcaactgggggaagaattaaa |
116 |
Q |
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| T |
39545062 |
atttttcaaacatcccacaatgctatggtgggtggcagtagtaattataggatttttgtaacagaagaacacaccaacatcaactgggggaagaattaaa |
39545161 |
T |
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| Q |
117 |
tcaaggtttgatagtggaagccagtgctcttgcattggcagagcagcagccactatttctttgttggtaactttcacggtgaattctacttttccaatac |
216 |
Q |
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| T |
39545162 |
tcaaggtttgatagtggaagccagtgctcttgcattggcagagcagcagccactatttctttgttggtaactttcacggtgaattctccttttccaatac |
39545261 |
T |
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| Q |
217 |
acattttggggactagattaggagaatgtttcac |
250 |
Q |
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| T |
39545262 |
acattttggggactagattaggagaatgtttcac |
39545295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 47 - 153
Target Start/End: Original strand, 39587526 - 39587632
Alignment:
| Q |
47 |
ggtgccagtagtaattataggatttttgtaacagaagaacacaccaacatcaactgggggaagaattaaatcaaggtttgatagtggaagccagtgctct |
146 |
Q |
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| T |
39587526 |
ggtgccaatagtaatcataggatttttgtagcaaaagaacacaccaatactaacagggggaagtagtaaatcaagatttgatagtgctagcctatgttct |
39587625 |
T |
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| Q |
147 |
tgcattg |
153 |
Q |
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| T |
39587626 |
tgcattg |
39587632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 17507292 - 17507380
Alignment:
| Q |
66 |
ggatttttgtaacagaagaacacaccaacatcaactgggggaagaattaaatcaaggtttgatagtggaagccagtgctcttgcattgg |
154 |
Q |
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| T |
17507292 |
ggattcttgtaacaaaagaacacaccaacatccactgcaggtagaagtaaatcaaggttagagagtggtagccaatgttcttgtattgg |
17507380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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