View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20175_low_41 (Length: 238)
Name: NF20175_low_41
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20175_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 49918238 - 49918459
Alignment:
| Q |
1 |
tttttgaagtatttaattagtattt-ggttatgtcttaggtgtgggatgttgtatccaacgaagaggcagtgaagattgtttgtgcagcagcacataaag |
99 |
Q |
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| T |
49918238 |
tttttgaagtatttaattaatattttggttatgtcttaggtgtgggatgttgtatccaacgaagaggcagtgaagattgtttgtgcagcagcacataaag |
49918337 |
T |
|
| Q |
100 |
aaaaagcaggtgaaaggcttgtgaaatatgccatacgtgaatggaaaagaaagagaagtggtattgcaatggatgatatgtcagcaatttgtctcttctt |
199 |
Q |
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| T |
49918338 |
aaaaagcaggtgaaaggcttgtgaaatatgccatacgtgaatggaaaagaaagagaagtggtattgcaatggatgatatgtcagcaatttgtctcttctt |
49918437 |
T |
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| Q |
200 |
tcatcaactcccacacactaaa |
221 |
Q |
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| T |
49918438 |
tcatcaactcccacacactaaa |
49918459 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 202
Target Start/End: Complemental strand, 13733684 - 13733519
Alignment:
| Q |
37 |
aggtgtgggatgttgtatccaacgaagaggcagtgaagattgtttgtgcagcagcacataaagaaaaagcaggtgaaaggcttgtgaaatatgccatacg |
136 |
Q |
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| T |
13733684 |
aggtatgggatgttatttccaaccaagtagctgtgaaaattgttgcttcaacaccaaatagagaaaaagcagctgataggctagtgaaatgtgcaagaca |
13733585 |
T |
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| Q |
137 |
tgaatggaaaagaaagagaagtggtattgcaatggatgatatgtcagcaatttgtctcttctttca |
202 |
Q |
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| T |
13733584 |
tgaatggataagtaagagaaaaggcattgcaattgatgatatatcagttatttgtctcttttttca |
13733519 |
T |
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