View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20175_low_42 (Length: 230)
Name: NF20175_low_42
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20175_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 14589047 - 14589246
Alignment:
| Q |
18 |
tcttttgggctttaaaagatcttaaagagggtgtacttgaattgcctaaagggttcgaggaaagaacaaaagaacgcggaattgtttggaaaacttgggt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14589047 |
tcttttgggctttaaaagatcttaaagagggtgtacttgaattgcctaaagggttcgaggaaagaacaaaagaacgcggaattgtttggaaaacttgggt |
14589146 |
T |
|
| Q |
118 |
accccagtttaagatcttaactcatggatcaattggtggttgtatgactcattgtggtccaagttcagtctttgaaatgctttatcttgggcatattctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14589147 |
accccagtttaagatcttaactcatggatcaattggtggttgtatgactcattgtggtccaagttcagtctttgaaatgctttatcttgggcatgttctt |
14589246 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 14622705 - 14622904
Alignment:
| Q |
18 |
tcttttgggctttaaaagatcttaaagagggtgtacttgaattgcctaaagggttcgaggaaagaacaaaagaacgcggaattgtttggaaaacttgggt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14622705 |
tcttttgggctttaaaagatcttaaagagggtgtacttgaattgcctaaagggttcgaggaaagaacaaaagaacgcggaattgtttggaaaacttgggc |
14622804 |
T |
|
| Q |
118 |
accccagtttaagatcttaactcatggatcaattggtggttgtatgactcattgtggtccaagttcagtctttgaaatgctttatcttgggcatattctt |
217 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| ||||| |
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| T |
14622805 |
accccagtttaagatcttaactcatgaatcaattagtggttgtatgactcattgtggtcccagttcagtcattgaaatgcttcatcttgggcatgttctt |
14622904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 12846602 - 12846776
Alignment:
| Q |
18 |
tcttttgggctttaaaagatcttaaagagggtgtacttgaattgcctaaagggttcgaggaaagaacaaaagaacgcggaattgtttggaaaacttgggt |
117 |
Q |
| |
|
||||||||||||| ||| | || ||| ||||| |||||| || |||||||| ||||| || |||| |||||||| ||||||||||||||||| |||| |
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| T |
12846602 |
tcttttgggctttgaaaaacctaaaaaagggtacacttgagttacctaaaggattcgaagatcgaaccaaagaacgtggaattgtttggaaaacatgggc |
12846701 |
T |
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| Q |
118 |
accccagtttaagatcttaactcatggatcaattggtggttgtatgactcattgtggtccaagttcagtctttga |
192 |
Q |
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||||||| ||||||||||| | |||||| ||||||| || ||||||| |||||||||| || |||||||| |||| |
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| T |
12846702 |
accccagcttaagatcttatcccatggagcaattggggggtgtatgagtcattgtggttcaggttcagtcattga |
12846776 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 51369829 - 51369630
Alignment:
| Q |
18 |
tcttttgggctttaaaagatcttaaagagggtgtacttgaattgcctaaagggttcgaggaaagaacaaaagaacgcggaattgtttggaaaacttgggt |
117 |
Q |
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|
||||||||||||| ||||||| |||||| |||||| |||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
51369829 |
tcttttgggctttgaaagatcgtaaagacggtgtatctgaattacctcaaggattcgaggaaagaacaaaagaacgtggaattgtttggaaaacctgggt |
51369730 |
T |
|
| Q |
118 |
accccagtttaagatcttaactcatggatcaattggtggttgtatgactcattgtggtccaagttcagtctttgaaatgctttatcttgggcatattctt |
217 |
Q |
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||||||| | || |||||| ||||| |||||||||||| ||||||| ||| |||||| |||||||||| |||| |||||| ||||||||||| ||||| |
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| T |
51369729 |
accccagatcaaaatcttagctcatccatcaattggtggatgtatgagtcactgtggtggaagttcagtcgttgagatgcttcatcttgggcatgttctt |
51369630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 29954624 - 29954817
Alignment:
| Q |
18 |
tcttttgggctttaaaagatcttaaagagggtgtacttgaattgcctaaagggttcgaggaaagaacaaaagaacgcggaattgtttggaaaacttgggt |
117 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| ||||||||| |||||||| || |||||||||||||||||| | ||||| ||||||||||| |||| |
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| T |
29954624 |
tcttttgggctttgaaaaatcttaaagagggtacacttgaattacctaaaggatttgaggaaagaacaaaagaatgtggaatcgtttggaaaacatgggc |
29954723 |
T |
|
| Q |
118 |
accccagtttaagatcttaactcatggatcaattggtggttgtatgactcattgtggtccaagttcagtctttgaaatgctttatcttgggcat |
211 |
Q |
| |
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||| || ||||||||||| ||||||||||||||||||| ||||||| |||||||||| || |||||||| |||| | |||| || |||||||| |
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| T |
29954724 |
acctcaacttaagatcttagctcatggatcaattggtggatgtatgagtcattgtggttcaggttcagtcattgagaagcttcattttgggcat |
29954817 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 11531937 - 11532130
Alignment:
| Q |
18 |
tcttttgggctttaaaagatcttaaagagggtgtacttgaattgcctaaagggttcgaggaaagaacaaaagaacgcggaattgtttggaaaacttgggt |
117 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| ||||||||| ||||||| || |||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
11531937 |
tcttttgggctttgaaaaatcttaaagagggtacacttgaattacctaaagaatttgaggaaagaacaaaagaacgtggaattgtttggaaaacatgggc |
11532036 |
T |
|
| Q |
118 |
accccagtttaagatcttaactcatggatcaattggtggttgtatgactcattgtggtccaagttcagtctttgaaatgctttatcttgggcat |
211 |
Q |
| |
|
||| || ||||||||||| | ||||||||||| ||||| ||||||| ||| |||||| || |||||||| |||| | |||| || |||||||| |
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| T |
11532037 |
accacaacttaagatcttagcacatggatcaatcggtggatgtatgagtcactgtggttcaggttcagtcattgagaagcttcattttgggcat |
11532130 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 1355088 - 1355245
Alignment:
| Q |
18 |
tcttttgggctttaaaagatcttaaagagggtgtacttgaattgcctaaagggttcgaggaaagaacaaaagaacgcggaattgtttggaaaacttgggt |
117 |
Q |
| |
|
|||||||| |||| || |||| ||||||||| ||||||||| ||| |||| ||||||||||| || ||||||||||||||||||||||| || |||| |
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| T |
1355088 |
tcttttggactttgaagaatctgaaagagggtacacttgaattacctgaaggattcgaggaaaggacgaaagaacgcggaattgtttggaagacatgggc |
1355187 |
T |
|
| Q |
118 |
accccagtttaagatcttaactcatggatcaattggtggttgtatgactcattgtggt |
175 |
Q |
| |
|
||| ||| ||||||||||| |||||||| |||||||||| ||||||| |||||||||| |
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|
| T |
1355188 |
acctcagcttaagatcttagctcatggagcaattggtggatgtatgagtcattgtggt |
1355245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 1361974 - 1362131
Alignment:
| Q |
18 |
tcttttgggctttaaaagatcttaaagagggtgtacttgaattgcctaaagggttcgaggaaagaacaaaagaacgcggaattgtttggaaaacttgggt |
117 |
Q |
| |
|
||||||||||||| || |||| ||||||||| ||||||||| ||| |||| || ||||||||||| ||||||||||||||||||||||| || |||| |
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| T |
1361974 |
tcttttgggctttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaattgtttggaagacatgggc |
1362073 |
T |
|
| Q |
118 |
accccagtttaagatcttaactcatggatcaattggtggttgtatgactcattgtggt |
175 |
Q |
| |
|
||| ||| |||| |||||| |||||||| |||||||||| ||||||| ||| |||||| |
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|
| T |
1362074 |
acctcagcttaaaatcttagctcatggagcaattggtggatgtatgagtcactgtggt |
1362131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 20492759 - 20492952
Alignment:
| Q |
18 |
tcttttgggctttaaaagatcttaaagagggtgtacttgaattgcctaaagggttcgaggaaagaacaaaagaacgcggaattgtttggaaaacttgggt |
117 |
Q |
| |
|
||||||||||||| ||| | |||||||| ||| ||||||||| || |||| || || ||||||||||||||| ||||| ||||||||||| |||| |
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|
| T |
20492759 |
tcttttgggctttgaaaaaccttaaagaaggtacacttgaattacccgaaggatttgaagaaagaacaaaagaatatggaatcgtttggaaaacatgggc |
20492858 |
T |
|
| Q |
118 |
accccagtttaagatcttaactcatggatcaattggtggttgtatgactcattgtggtccaagttcagtctttgaaatgctttatcttgggcat |
211 |
Q |
| |
|
||| ||| | ||||||||| ||||||||||||||||||| ||||||| |||||||||| || |||||||| |||| | |||| || |||||||| |
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|
| T |
20492859 |
accacagctaaagatcttagctcatggatcaattggtggatgtatgagtcattgtggttcaggttcagtcattgagaagcttcattttgggcat |
20492952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 1357984 - 1358041
Alignment:
| Q |
127 |
taagatcttaactcatggatcaattggtggttgtatgactcattgtggtccaagttca |
184 |
Q |
| |
|
|||||||||| |||||| ||| ||||||||||| |||||||||||||| || ||||| |
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|
| T |
1357984 |
taagatcttaggtcatggttcagttggtggttgtttgactcattgtggttcaggttca |
1358041 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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