View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20175_low_45 (Length: 213)

Name: NF20175_low_45
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20175_low_45
NF20175_low_45
[»] chr1 (10 HSPs)
chr1 (1-198)||(35034317-35034518)
chr1 (1-33)||(34748049-34748081)
chr1 (1-38)||(24987606-24987643)
chr1 (1-38)||(26095812-26095849)
chr1 (1-50)||(28410900-28410949)
chr1 (1-38)||(32131925-32131962)
chr1 (1-37)||(18458824-18458860)
chr1 (1-37)||(25235773-25235809)
chr1 (1-37)||(26097049-26097085)
chr1 (1-37)||(47022091-47022127)
[»] chr2 (9 HSPs)
chr2 (1-38)||(30371383-30371420)
chr2 (1-37)||(23260319-23260355)
chr2 (1-40)||(28484614-28484653)
chr2 (1-39)||(34635703-34635741)
chr2 (1-38)||(19493470-19493507)
chr2 (1-38)||(22116153-22116190)
chr2 (3-39)||(16577371-16577407)
chr2 (1-37)||(17328091-17328127)
chr2 (1-37)||(44241096-44241132)
[»] scaffold0384 (2 HSPs)
scaffold0384 (1-37)||(4248-4284)
scaffold0384 (1-41)||(4449-4489)
[»] chr8 (11 HSPs)
chr8 (1-36)||(9513828-9513863)
chr8 (1-40)||(39515144-39515183)
chr8 (1-39)||(34985344-34985382)
chr8 (3-40)||(12330329-12330366)
chr8 (4-45)||(26170420-26170461)
chr8 (1-37)||(3912502-3912538)
chr8 (1-37)||(14329622-14329658)
chr8 (1-37)||(25277728-25277764)
chr8 (1-37)||(29309564-29309600)
chr8 (1-40)||(31985007-31985047)
chr8 (1-37)||(35009966-35010002)
[»] chr7 (5 HSPs)
chr7 (1-36)||(5766638-5766673)
chr7 (1-37)||(1594146-1594182)
chr7 (1-37)||(6269527-6269563)
chr7 (1-37)||(19272471-19272507)
chr7 (1-37)||(23784583-23784619)
[»] chr4 (7 HSPs)
chr4 (1-36)||(51965372-51965407)
chr4 (1-38)||(11563539-11563576)
chr4 (1-38)||(37273417-37273454)
chr4 (1-41)||(17800750-17800789)
chr4 (1-37)||(20125440-20125476)
chr4 (1-37)||(21780121-21780157)
chr4 (1-37)||(24215763-24215799)
[»] scaffold0769 (1 HSPs)
scaffold0769 (1-39)||(4173-4211)
[»] chr5 (6 HSPs)
chr5 (1-39)||(20698542-20698580)
chr5 (1-39)||(22551519-22551557)
chr5 (1-39)||(37205002-37205040)
chr5 (1-38)||(10976769-10976806)
chr5 (1-37)||(29104443-29104479)
chr5 (1-37)||(38482317-38482353)
[»] chr3 (8 HSPs)
chr3 (1-39)||(49872971-49873009)
chr3 (1-38)||(6510213-6510250)
chr3 (1-38)||(9322117-9322154)
chr3 (3-36)||(51252049-51252082)
chr3 (1-37)||(6774842-6774878)
chr3 (1-37)||(25110083-25110119)
chr3 (1-37)||(27760288-27760324)
chr3 (1-37)||(51460785-51460821)
[»] chr6 (3 HSPs)
chr6 (1-42)||(13114392-13114433)
chr6 (1-37)||(3063505-3063541)
chr6 (1-37)||(29942465-29942501)
[»] scaffold0450 (1 HSPs)
scaffold0450 (1-41)||(8117-8157)
[»] scaffold0032 (1 HSPs)
scaffold0032 (1-37)||(91049-91085)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-40)||(227365-227405)


Alignment Details
Target: chr1 (Bit Score: 129; Significance: 6e-67; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 35034317 - 35034518
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccctaattgtaattatgcat------gcgcgtgtgttttaaatagctacaaagtttcttatcattat 94  Q
    |||||||||||||||||  ||||||| ||||||||| |||| |||||||||||      ||| ||||||||| |||||||||||||||||||||||||||    
T  35034317 tgacctatattacaggggataaagacctattaaccc-aattttaattatgcatgtgtgcgcgtgtgtgttttgaatagctacaaagtttcttatcattat 35034415  T
Q  95 ctaaaagttgtccatttacataaaaggttttagtatcattgtatcatgaatcatatatatgaatatgttttgattcctaattatttaatattgtgtgaat 194  Q
    |||||  |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35034416 ctaaacattgtccatttacat-aaaggttttagtatcattgtatcatgcatcatatatatgaatatgttttgattcctaattatttaatattgtgtgaat 35034514  T
Q  195 tgta 198  Q
    ||||    
T  35034515 tgta 35034518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 34748081 - 34748049
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  34748081 tgacctatattacagggagtaaagacatattaa 34748049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24987643 - 24987606
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaacccta 38  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  24987643 tgacctatattacagggggtaaagacctattaacccta 24987606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 26095849 - 26095812
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaacccta 38  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  26095849 tgacctatattacagggggtaaagacctattaacccta 26095812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 28410949 - 28410900
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccctaattgtaattatg 50  Q
    |||||||||||||||||  ||||||| |||||||||||||| | ||||||    
T  28410949 tgacctatattacaggggataaagacctattaaccctaattattattatg 28410900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 32131925 - 32131962
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaacccta 38  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  32131925 tgacctatattacagggggtaaagacctattaacccta 32131962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 18458824 - 18458860
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  18458824 tgacctatattacagggggtaaagacctattaaccct 18458860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25235809 - 25235773
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  25235809 tgacctatattacagggggtaaagacctattaaccct 25235773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26097049 - 26097085
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  26097049 tgacctatattacagggggtaaagacctattaaccct 26097085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 47022091 - 47022127
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  47022091 tgacctatattacagggggtaaagacctattaaccct 47022127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 30371420 - 30371383
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaacccta 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  30371420 tgacctatattacagggagtaaagacctattaacccta 30371383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 23260355 - 23260319
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    |||||||||||||||||||||||||| ||||||||||    
T  23260355 tgacctatattacagggagtaaagacctattaaccct 23260319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 28484614 - 28484653
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccctaat 40  Q
    |||||||||||||||||||||||||| |||||| ||||||    
T  28484614 tgacctatattacagggagtaaagacctattaatcctaat 28484653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 34635741 - 34635703
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccctaa 39  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  34635741 tgacctatattacagggggtaaagacctattaaccctaa 34635703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19493470 - 19493507
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaacccta 38  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  19493470 tgacctatattacagggggtaaagacctattaacccta 19493507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 22116190 - 22116153
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaacccta 38  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  22116190 tgacctatattacagggggtaaagacctattaacccta 22116153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 16577371 - 16577407
Alignment:
Q  3 acctatattacagggagtaaagacatattaaccctaa 39  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  16577371 acctatattacagggggtaaagacctattaaccctaa 16577407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 17328127 - 17328091
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  17328127 tgacctatattacagggggtaaagacctattaaccct 17328091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 44241132 - 44241096
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    |||||||||||||||||||||||| | ||||||||||    
T  44241132 tgacctatattacagggagtaaagtcctattaaccct 44241096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4284 - 4248
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    |||||||||||||||||||||||||| ||||||||||    
T  4284 tgacctatattacagggagtaaagacctattaaccct 4248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 4449 - 4489
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccctaatt 41  Q
    ||||||||||||||||| |||||||| ||||||||| ||||    
T  4449 tgacctatattacagggggtaaagacctattaacccaaatt 4489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 9513863 - 9513828
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccc 36  Q
    ||||||||||||||||| ||||||||||||||||||    
T  9513863 tgacctatattacagggggtaaagacatattaaccc 9513828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 39515144 - 39515183
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccctaat 40  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  39515144 tgacctatattacagggagtaaaggcctattaaccctaat 39515183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 34985344 - 34985382
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccctaa 39  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  34985344 tgacctatattacagggggtaaagacctattaaccctaa 34985382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 12330366 - 12330329
Alignment:
Q  3 acctatattacagggagtaaagacatattaaccctaat 40  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  12330366 acctatattacagggggtaaagacctattaaccctaat 12330329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 26170420 - 26170461
Alignment:
Q  4 cctatattacagggagtaaagacatattaaccctaattgtaa 45  Q
    |||| ||||||||| ||||||||||||||||||||| |||||    
T  26170420 cctaaattacagggggtaaagacatattaaccctaaatgtaa 26170461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3912502 - 3912538
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  3912502 tgacctatattacagggggtaaagacttattaaccct 3912538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 14329622 - 14329658
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  14329622 tgacctatattacagggggtaaagacctattaaccct 14329658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 25277728 - 25277764
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  25277728 tgacctatattacagggggtaaagacctattaaccct 25277764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29309600 - 29309564
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  29309600 tgacctatattacagggggtaaagacctattaaccct 29309564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 31985047 - 31985007
Alignment:
Q  1 tgacctatattacaggga-gtaaagacatattaaccctaat 40  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  31985047 tgacctatattacagggaggtaaagacctattaaccctaat 31985007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 35009966 - 35010002
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  35009966 tgacctatattgcagggggtaaagacatattaaccct 35010002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 5766673 - 5766638
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccc 36  Q
    ||||||||||||||||| ||||||||||||||||||    
T  5766673 tgacctatattacagggggtaaagacatattaaccc 5766638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1594146 - 1594182
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  1594146 tgacctatattacagggggtaaagacctattaaccct 1594182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6269563 - 6269527
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  6269563 tgacctatattacagggggtaaagacctattaaccct 6269527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19272471 - 19272507
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  19272471 tgacctatattacagggggtaaagacctattaaccct 19272507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 23784619 - 23784583
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  23784619 tgacctatattacagggggtaaagacctattaaccct 23784583  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 51965407 - 51965372
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccc 36  Q
    |||||||||||||||||||||||||| |||||||||    
T  51965407 tgacctatattacagggagtaaagacctattaaccc 51965372  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 11563539 - 11563576
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaacccta 38  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  11563539 tgacctatattacagggggtaaagacctattaacccta 11563576  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 37273417 - 37273454
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaacccta 38  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  37273417 tgacctatattacagggggtaaagacctattaacccta 37273454  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 17800789 - 17800750
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccctaatt 41  Q
    |||||||||||||||| ||||||||| ||||||||||||||    
T  17800789 tgacctatattacagg-agtaaagacctattaaccctaatt 17800750  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 20125440 - 20125476
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  20125440 tgacctatattacagggggtaaagacctattaaccct 20125476  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 21780157 - 21780121
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  21780157 tgacctatattacagggggtaaagacctattaaccct 21780121  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24215763 - 24215799
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  24215763 tgacctatattacagggggtaaagacctattaaccct 24215799  T

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Target: scaffold0769 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 4173 - 4211
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccctaa 39  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  4173 tgacctatattacagggggtaaagacctattaaccctaa 4211  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 20698542 - 20698580
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccctaa 39  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  20698542 tgacctatattacaggaagtaaagacctattaaccctaa 20698580  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 22551557 - 22551519
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccctaa 39  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  22551557 tgacctatattacagggggtaaagacctattaaccctaa 22551519  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 37205002 - 37205040
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccctaa 39  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  37205002 tgacctatattacagagggtaaagacatattaaccctaa 37205040  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10976769 - 10976806
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaacccta 38  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  10976769 tgacctatattacagggggtaaagacctattaacccta 10976806  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29104479 - 29104443
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  29104479 tgacctatattacagggggtaaagacctattaaccct 29104443  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38482353 - 38482317
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  38482353 tgacctatattacagggggtaaagacctattaaccct 38482317  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 49872971 - 49873009
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccctaa 39  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  49872971 tgacctatattacagggggtaaagacctattaaccctaa 49873009  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 6510250 - 6510213
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaacccta 38  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  6510250 tgacctatattacagggggtaaagacctattaacccta 6510213  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9322154 - 9322117
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaacccta 38  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  9322154 tgacatatattacagggagtaaagacctattaacccta 9322117  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 51252082 - 51252049
Alignment:
Q  3 acctatattacagggagtaaagacatattaaccc 36  Q
    |||||||||||||||||||||||| |||||||||    
T  51252082 acctatattacagggagtaaagacctattaaccc 51252049  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6774842 - 6774878
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    |||||||||||||| || |||||||||||||||||||    
T  6774842 tgacctatattacaaggggtaaagacatattaaccct 6774878  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 25110083 - 25110119
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  25110083 tgacctatattacagggtgtaaagacctattaaccct 25110119  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 27760324 - 27760288
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  27760324 tgacctatattacagggggtaaagacttattaaccct 27760288  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 51460785 - 51460821
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  51460785 tgacctatattacagggggtaaagacctattaaccct 51460821  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13114433 - 13114392
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccctaattg 42  Q
    ||||||||||||||||| |||||||| ||||||||| |||||    
T  13114433 tgacctatattacagggggtaaagacctattaacccaaattg 13114392  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3063505 - 3063541
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  3063505 tgacctatattacagggggtaaagacctattaaccct 3063541  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29942465 - 29942501
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  29942465 tgacctatattacagggggtaaagacctattaaccct 29942501  T

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Target: scaffold0450 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 8117 - 8157
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccctaatt 41  Q
    ||||||||||||||| | |||||||| ||||||||||||||    
T  8117 tgacctatattacagtgggtaaagacctattaaccctaatt 8157  T

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Target: scaffold0032 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 91085 - 91049
Alignment:
Q  1 tgacctatattacagggagtaaagacatattaaccct 37  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  91085 tgacctatattacagggggtaaagacctattaaccct 91049  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 227405 - 227365
Alignment:
Q  1 tgacctatattacaggga-gtaaagacatattaaccctaat 40  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  227405 tgacctatattacagggaggtaaagacctattaaccctaat 227365  T

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