View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20175_low_5 (Length: 568)
Name: NF20175_low_5
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20175_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 14 - 550
Target Start/End: Complemental strand, 30468483 - 30467948
Alignment:
| Q |
14 |
aaaattcacactaatatatataataccaaaacttataagcgcatatatgcttatccattaaaaggtaaagagactaaaataaagaatgaaagagagatta |
113 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30468483 |
aaaattcacactaatatata--ataccaaaacttataagcgcatatatgcttatccattaaaaggtaaagaaactaaaataaagaatgaaagagagatta |
30468386 |
T |
|
| Q |
114 |
aaaaggactagatcctctatggatgcaatataatattacatgcttagattcactcgaaatctaacaccctctacaactacaacatcatactgcaactgca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
30468385 |
gaaaggactagatcctctatggatgcaatataatattacatgcgtagattcattcgaaatctaacaccccctacaactgcaacatcatactgcaactgca |
30468286 |
T |
|
| Q |
214 |
gatgatctaatatttgatcaaaaagtaacaacttatagcttcatatccaaaatcctt-cgaggttaaggaaaatttggtggtgaatcatggcccacacca |
312 |
Q |
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| T |
30468285 |
gatgatctaatatttgatcaaaaagtaacaacttatagcttcatacccaaaatcctttcgaggttaaggaaaatttggtggcgaatcatggcccacacca |
30468186 |
T |
|
| Q |
313 |
ggactatgaccaggagtagttggacgaaaagcatcaccttgactatccttgtcatcatttttggtataaaaaccaatggaaggagcttgtggactcctca |
412 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30468185 |
ggactatgaccaggactagttggacgaaaagcatcaccttgactatccttgtcatcatttttggtataaaagccaatggaaggagcttgtggactcctca |
30468086 |
T |
|
| Q |
413 |
acaaagctcttggaattgttggtggtgcttcaacattcttccctatcacttccatcaaaccaaaattttgcacaagaatgagaaaaacaagaaagcttaa |
512 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30468085 |
acaaaactcttggaattgttggtggtgcttcaacattcttccctagcacttccatcaaaccaaaattttgcacaagaatgagaaaaacaagaaagcttaa |
30467986 |
T |
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| Q |
513 |
cataatggttttctttgccatgaagctcactatagggc |
550 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
30467985 |
cataatggttttctttgccatgaagctcactatagggc |
30467948 |
T |
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