View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20175_low_6 (Length: 564)

Name: NF20175_low_6
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20175_low_6
NF20175_low_6
[»] chr8 (7 HSPs)
chr8 (18-557)||(25400700-25401238)
chr8 (18-557)||(25496880-25497418)
chr8 (134-529)||(24898058-24898460)
chr8 (140-209)||(24899011-24899076)
chr8 (18-97)||(24899054-24899133)
chr8 (18-115)||(1349189-1349286)
chr8 (76-117)||(26149977-26150018)
[»] chr7 (3 HSPs)
chr7 (298-521)||(5879417-5879639)
chr7 (18-83)||(26009380-26009445)
chr7 (528-557)||(3835476-3835505)
[»] chr4 (4 HSPs)
chr4 (90-235)||(35313178-35313321)
chr4 (98-197)||(35313904-35314001)
chr4 (32-176)||(27992216-27992357)
chr4 (115-197)||(23242531-23242613)
[»] chr5 (2 HSPs)
chr5 (115-246)||(6158170-6158300)
chr5 (139-201)||(6158824-6158885)
[»] chr3 (7 HSPs)
chr3 (18-117)||(8150180-8150279)
chr3 (35-80)||(34082867-34082912)
chr3 (203-246)||(45176585-45176628)
chr3 (135-180)||(45003183-45003228)
chr3 (98-146)||(45003185-45003231)
chr3 (18-55)||(53101187-53101224)
chr3 (31-83)||(3539692-3539744)
[»] chr6 (3 HSPs)
chr6 (31-88)||(7203948-7204005)
chr6 (31-80)||(14153378-14153427)
chr6 (115-144)||(24359122-24359151)
[»] chr2 (3 HSPs)
chr2 (18-71)||(12965060-12965113)
chr2 (90-152)||(6282438-6282498)
chr2 (115-151)||(8241824-8241860)
[»] chr1 (3 HSPs)
chr1 (34-86)||(2094361-2094413)
chr1 (31-83)||(35392106-35392158)
chr1 (110-151)||(732003-732044)


Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 557
Target Start/End: Complemental strand, 25401238 - 25400700
Alignment:
Q  18 tttacccatacgtttttgctcatttccaaagtaaatgataaaaatactcctacgcatattaactcatgctattgttaattctgcgtgatttaactcacac 117  Q
    ||||||||||||||||||||||||| |||||||||| | ||||||||  |||| ||| ||||||||||||||| |||||||||||||| |||||||||||    
T  25401238 tttacccatacgtttttgctcatttacaaagtaaataacaaaaataccactacacatgttaactcatgctattattaattctgcgtgacttaactcacac 25401139  T
Q  118 gctagtgtaaatctctacgtgagttaactaacgctagttttaatttatacgtgagttaactcacgttaattttaaacaatgactccaaggcacccctttt 217  Q
    | |||||||||| ||||||||| |||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25401138 gatagtgtaaatatctacgtgaattaactcacgctagttttaatttctacgtgagataactcacgttaattttaaacaatgactccaaggcacccctttt 25401039  T
Q  218 gctggtacaacaaccatgactccaaccaaaattgtgctacnnnnnnnnnnnnnnnaaacgatgactcaaaggcacccctactgcttcttttggtattgtg 317  Q
    |||  |||||||||||||||||||||||||||||||||||               | || ||||||||||||||||||||||||||||| ||||||||||    
T  25401038 gctaatacaacaaccatgactccaaccaaaattgtgctactttttttttttttt-agacaatgactcaaaggcacccctactgcttcttctggtattgtg 25400940  T
Q  318 gctgcttaagtttacaaaatgtatatcatatcgtactctcaagaagattgcgtaatggcgtttgtccaggaaacttggtgagaatttattttgtcattga 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25400939 gctgcttaagtttacaaaatgtatatcatatcgtactctcaagaagattgcgtaatggcgtttgtccaggaaacttggtgagaatttattttgtcattga 25400840  T
Q  418 tctaagatatttatatgcgaagatgaatctagctttcaattagaacaaaaaccccaaatcannnnnnnacaatcttttgcatgcaatttgtctttcacac 517  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  25400839 tctaagatatttatatgcgaagataaatctagctttcaattagaacaaaaaccccaaatcatttttttacaatcttttgcatgcaatttgtctttcacac 25400740  T
Q  518 gttcgcgataattcatgaagtcttttatttttcttctctc 557  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  25400739 gttcccgataatttatgaagtcttttatttttcttctctc 25400700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 557
Target Start/End: Complemental strand, 25497418 - 25496880
Alignment:
Q  18 tttacccatacgtttttgctcatttccaaagtaaatgataaaaatactcctacgcatattaactcatgctattgttaattctgcgtgatttaactcacac 117  Q
    ||||||||||||||||||||||||| |||||||||| | |||||||| ||||| ||| ||||||||||||||| |||||||||||||| |||||||||||    
T  25497418 tttacccatacgtttttgctcattttcaaagtaaattacaaaaatacccctactcatgttaactcatgctattattaattctgcgtgacttaactcacac 25497319  T
Q  118 gctagtgtaaatctctacgtgagttaactaacgctagttttaatttatacgtgagttaactcacgttaattttaaacaatgactccaaggcacccctttt 217  Q
    | |||||||||| ||||||||| |||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25497318 gttagtgtaaatatctacgtgacttaactcacgctagttttaatttctacgtgagataactcacgttaattttaaacaatgactccaaggcacccctttt 25497219  T
Q  218 gctggtacaacaaccatgactccaaccaaaattgtgctacnnnnnnnnnnnnnnnaaacgatgactcaaaggcacccctactgcttcttttggtattgtg 317  Q
    |||  |||||||||||||||||||||||||||||||||||               | || ||||||||||||||||||||||||||||| ||||||||||    
T  25497218 gctaatacaacaaccatgactccaaccaaaattgtgctactttttttttttttt-agacaatgactcaaaggcacccctactgcttcttctggtattgtg 25497120  T
Q  318 gctgcttaagtttacaaaatgtatatcatatcgtactctcaagaagattgcgtaatggcgtttgtccaggaaacttggtgagaatttattttgtcattga 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  25497119 gctgcttaagtttacaaaatgtatatcatatcgtactctcaagaagattgcgtaatggcgtttgtccagcaaacttggagagaatttattttgtcattga 25497020  T
Q  418 tctaagatatttatatgcgaagatgaatctagctttcaattagaacaaaaaccccaaatcannnnnnnacaatcttttgcatgcaatttgtctttcacac 517  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  25497019 tctaagatatttatatgcgaagataaatctagctttcaattagaacaaaaaccccaaatcatttttttacaatcttttgcatgcaatttgtctttcacac 25496920  T
Q  518 gttcgcgataattcatgaagtcttttatttttcttctctc 557  Q
    | || |||||||| ||||||||||||||||||||||||||    
T  25496919 gatcccgataatttatgaagtcttttatttttcttctctc 25496880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 134 - 529
Target Start/End: Original strand, 24898058 - 24898460
Alignment:
Q  134 acgtgagttaactaacgctagttttaatttatacgtgagttaactcacgttaattttaaacaatgactccaaggcaccccttttgctggtacaacaacca 233  Q
    ||||||||||||  ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24898058 acgtgagttaacccacgttagttttaatttctacgtgagttaactcacgttaattttaaacaatgactccaaggcaccccttttgctgatacaacaacca 24898157  T
Q  234 tgactccaaccaaaattgtgctacnnnnnnnnnnnnnnn------aaacgatgactcaaaggcacccctactgcttcttttggtattgtggctgcttaag 327  Q
     | |||||||||||||||||||||                     |||| ||||||||||||||| ||||||||||||| ||||||||||||| ||||||    
T  24898158 cggctccaaccaaaattgtgctactttttttttttttttttttttaaacaatgactcaaaggcactcctactgcttcttctggtattgtggctacttaag 24898257  T
Q  328 tttacaaaatgtatatcatatcgtactctcaagaagattgcgtaatggcgtttgtccaggaaacttggtgagaatttattttgtcattgatctaagata- 426  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  24898258 tttagaaaatgtatatcatatcgtactctcaagaagattgtgtaatggcgtttgtccaggaaacttggtgagaatttattttgtcattgatctaagatat 24898357  T
Q  427 tttatatgcgaagatgaatctagctttcaattagaacaaaaaccccaaatcannnnnnnacaatcttttgcatgcaatttgtctttcacacgttcgcgat 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||| ||||    
T  24898358 tttatatgcgaagatgaatctagctttcaattagaacaaaaaccccaaatcatttttttacaatcttttgcatgcaatttgtctttcacacgttcccgat 24898457  T
Q  527 aat 529  Q
    |||    
T  24898458 aat 24898460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 24899076 - 24899011
Alignment:
Q  140 gttaactaacgctagttttaatttatacgtgagttaactcacgttaattttaaacaatgactccaaggca 209  Q
    ||||||| |||||||||||||||| |||||||    ||||||||||||||||||||||||||||||||||    
T  24899076 gttaactcacgctagttttaatttctacgtga----actcacgttaattttaaacaatgactccaaggca 24899011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 24899133 - 24899054
Alignment:
Q  18 tttacccatacgtttttgctcatttccaaagtaaatgataaaaatactcctacgcatattaactcatgctattgttaatt 97  Q
    |||||||| ||  ||||| ||||| ||| |||||||||  ||||||||||||||||| |||||||| |||| | ||||||    
T  24899133 tttacccaaacacttttgttcattcccagagtaaatgaccaaaatactcctacgcatgttaactcacgctagttttaatt 24899054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 1349286 - 1349189
Alignment:
Q  18 tttacccatacgtttttgctcatttccaaagtaaatgataaaaatactcctacgcatattaactcatgctattgttaattctgcgtgatttaactcac 115  Q
    |||||||| | ||||||||||||| || ||  ||||||  ||||||| | ||||||| ||||||||  |||||||||| | ||||||| || ||||||    
T  1349286 tttacccaaaagtttttgctcattcccgaatgaaatgaccaaaatacccttacgcatgttaactcacactattgttaaatttgcgtgagttgactcac 1349189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 26150018 - 26149977
Alignment:
Q  76 ttaactcatgctattgttaattctgcgtgatttaactcacac 117  Q
    ||||||||||||| |||||||||||||||| |||||| ||||    
T  26150018 ttaactcatgctaatgttaattctgcgtgagttaacttacac 26149977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 298 - 521
Target Start/End: Complemental strand, 5879639 - 5879417
Alignment:
Q  298 ctgcttcttttggtattgtggctgcttaagtttacaaaatgtatatcatatcgtactctcaagaagattgcgtaatggcgtttgtccaggaaacttggtg 397  Q
    ||||||||| |||||  ||||||||||||||||||||||||||| |||||| |||||||||||||||||||  |||||| ||||| ||||||||| ||||    
T  5879639 ctgcttcttctggtaaggtggctgcttaagtttacaaaatgtatctcatattgtactctcaagaagattgcacaatggcatttgttcaggaaactcggtg 5879540  T
Q  398 agaatttattttgtcattgatctaagatatttatatgcgaagatgaatctagctttcaattagaacaaaaaccccaaatcannnnnnnacaatcttttgc 497  Q
    |||||||||||| || || |||||| ||||| ||||| ||||||||||||||||||||| |||  |||| | ||||||| |       ||||||||||||    
T  5879539 agaatttattttctcctt-atctaaaatattgatatgagaagatgaatctagctttcaagtaggccaaagaacccaaataaattttttacaatcttttgc 5879441  T
Q  498 atgcaatttgtctttcacacgttc 521  Q
    |||  |||||| ||||||| ||||    
T  5879440 atgagatttgtgtttcacatgttc 5879417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 26009380 - 26009445
Alignment:
Q  18 tttacccatacgtttttgctcatttccaaagtaaatgataaaaatactcctacgcatattaactca 83  Q
    |||||||| ||| ||||||||||| |||||||||||||  |||||| |||||||||| ||||||||    
T  26009380 tttacccaaacgattttgctcattcccaaagtaaatgaccaaaatattcctacgcatgttaactca 26009445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 557
Target Start/End: Original strand, 3835476 - 3835505
Alignment:
Q  528 attcatgaagtcttttatttttcttctctc 557  Q
    ||||||||||||||||||||||||||||||    
T  3835476 attcatgaagtcttttatttttcttctctc 3835505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 8e-44; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 90 - 235
Target Start/End: Original strand, 35313178 - 35313321
Alignment:
Q  90 tgttaattctgcgtgatttaactcacacgctagtgtaaatctctacgtgagttaactaacgctagttttaatttatacgtgagttaactcacgttaattt 189  Q
    |||||||||||||||| ||||| |||||  ||   |||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||  |||    
T  35313178 tgttaattctgcgtgagttaacccacac--taacataaatctctacgtgagttaaatcacgctagttttaatttctacgtgagttaactcacgttggttt 35313275  T
Q  190 taaacaatgactccaaggcaccccttttgctggtacaacaaccatg 235  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  35313276 taaacaatgactccaaggcaccccttttgctgatacaacaaccatg 35313321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 35314001 - 35313904
Alignment:
Q  98 ctgcgtgatttaactcacacgctagtgtaaatctctacgtgagttaactaacgctagttttaatttatacgtgagttaactcacgttaattttaaacaat 197  Q
    |||||||| |||||||||  |||||||||||||||||||||||||||||  || |||||||||||| || |||||||||||||| ||| |||||||||||    
T  35314001 ctgcgtgagttaactcac--gctagtgtaaatctctacgtgagttaactcgcgttagttttaatttctaagtgagttaactcactttagttttaaacaat 35313904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 32 - 176
Target Start/End: Complemental strand, 27992357 - 27992216
Alignment:
Q  32 tttgctcatttccaaagtaaatgataaaaatactcctacgcatattaactcatgctattgttaattctgcgtgatttaactcacacgctagtgtaaatct 131  Q
    |||||||||||| ||| ||||||   ||||||| |||| |||| |||||||| |||| ||| |||||  ||| |||||||||||  ||||||||||||||    
T  27992357 tttgctcatttctaaaataaatgtccaaaatacccctatgcatgttaactcacgctagtgt-aattcaacgtaatttaactcac--gctagtgtaaatct 27992261  T
Q  132 ctacgtgagttaactaacgctagttttaatttatacgtgagttaa 176  Q
    |||| ||||||||||  || |||||||||||| ||||||||||||    
T  27992260 ctacatgagttaactcgcgttagttttaatttctacgtgagttaa 27992216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 23242531 - 23242613
Alignment:
Q  115 cacgctagtgtaaatctctacgtgagttaactaacgctag-ttttaatttatacgtgagttaactcacgttaattttaaacaat 197  Q
    ||||| |||||||||||||||||||||||||| ||| ||| ||||||||| |||  |||||||||| || || |||||||||||    
T  23242531 cacgccagtgtaaatctctacgtgagttaactcacgttagtttttaatttttacacgagttaactcgcg-tagttttaaacaat 23242613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 115 - 246
Target Start/End: Original strand, 6158170 - 6158300
Alignment:
Q  115 cacgctagtgtaaatctctacgtgagttaactaacgctagttttaatttatacgtgagttaactcacgttaattttaaacaatgactccaaggcacccct 214  Q
    ||||||||||||||||||||| |||||||||| ||| |||||||||||| | | |||||||||||||||||||| |||||||||||||||||||| |||     
T  6158170 cacgctagtgtaaatctctacatgagttaactcacgttagttttaatttctccttgagttaactcacgttaattgtaaacaatgactccaaggca-ccca 6158268  T
Q  215 tttgctggtacaacaaccatgactccaaccaa 246  Q
    ||||||| ||||||||||||||||||||||||    
T  6158269 tttgctgatacaacaaccatgactccaaccaa 6158300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 6158885 - 6158824
Alignment:
Q  139 agttaactaacgctagttttaatttatacgtgagttaactcacgttaattttaaacaatgact 201  Q
    ||||||||  |||||||||||||||  |||||||||| |||||||||||||||||||||||||    
T  6158885 agttaactcgcgctagttttaatttccacgtgagtta-ctcacgttaattttaaacaatgact 6158824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 8150180 - 8150279
Alignment:
Q  18 tttacccatacgtttttgctcatttccaaagtaaatgataaaaatactcctacgcatattaactcatgctattgttaattctgcgtgatttaactcacac 117  Q
    |||||||| ||||||||||||||| |||||| || |||  ||||||| |||||| || ||||||||||||| |||||| | ||||||| |||||||||||    
T  8150180 tttacccaaacgtttttgctcattcccaaagaaactgaccaaaatacccctacgtatgttaactcatgctaatgttaaatatgcgtgagttaactcacac 8150279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 34082867 - 34082912
Alignment:
Q  35 gctcatttccaaagtaaatgataaaaatactcctacgcatattaac 80  Q
    |||||||||||||||||||||| ||||| ||||||||||| |||||    
T  34082867 gctcatttccaaagtaaatgatcaaaatgctcctacgcatgttaac 34082912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 45176585 - 45176628
Alignment:
Q  203 caaggcaccccttttgctggtacaacaaccatgactccaaccaa 246  Q
    ||||||||  ||||||||| ||||||||||||||||||||||||    
T  45176585 caaggcacaacttttgctgatacaacaaccatgactccaaccaa 45176628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 45003228 - 45003183
Alignment:
Q  135 cgtgagttaactaacgctagttttaatttatacgtgagttaactca 180  Q
    |||||||||||| |||||||| ||||| | ||||||||||||||||    
T  45003228 cgtgagttaactcacgctagtgttaatctctacgtgagttaactca 45003183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 45003231 - 45003185
Alignment:
Q  98 ctgcgtgatttaactcacacgctagtgtaaatctctacgtgagttaact 146  Q
    |||||||| |||||||||  |||||||| ||||||||||||||||||||    
T  45003231 ctgcgtgagttaactcac--gctagtgttaatctctacgtgagttaact 45003185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 53101224 - 53101187
Alignment:
Q  18 tttacccatacgtttttgctcatttccaaagtaaatga 55  Q
    |||||||| || ||||||||||||||||||||||||||    
T  53101224 tttacccaaacatttttgctcatttccaaagtaaatga 53101187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 3539692 - 3539744
Alignment:
Q  31 ttttgctcatttccaaagtaaatgataaaaatactcctacgcatattaactca 83  Q
    ||||||||||||||||| |||||||| ||||||  ||||| ||| ||||||||    
T  3539692 ttttgctcatttccaaaataaatgatcaaaatagccctacacatgttaactca 3539744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 7204005 - 7203948
Alignment:
Q  31 ttttgctcatttccaaagtaaatgataaaaatactcctacgcatattaactcatgcta 88  Q
    |||||||| || |||||||||||||| ||||||| ||||||||| |||||||||||||    
T  7204005 ttttgctcgttcccaaagtaaatgatcaaaatacccctacgcatgttaactcatgcta 7203948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 14153378 - 14153427
Alignment:
Q  31 ttttgctcatttccaaagtaaatgataaaaatactcctacgcatattaac 80  Q
    ||||||||||| |||||||||||||  ||||||| ||||||||| |||||    
T  14153378 ttttgctcattcccaaagtaaatgaccaaaatacccctacgcatgttaac 14153427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 144
Target Start/End: Original strand, 24359122 - 24359151
Alignment:
Q  115 cacgctagtgtaaatctctacgtgagttaa 144  Q
    ||||||||||||||||||||||||||||||    
T  24359122 cacgctagtgtaaatctctacgtgagttaa 24359151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 12965060 - 12965113
Alignment:
Q  18 tttacccatacgtttttgctcatttccaaagtaaatgataaaaatactcctacg 71  Q
    |||||||| |||||| ||||||||| ||||||||||||| ||||| ||||||||    
T  12965060 tttacccaaacgtttctgctcattttcaaagtaaatgatcaaaatgctcctacg 12965113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 152
Target Start/End: Complemental strand, 6282498 - 6282438
Alignment:
Q  90 tgttaattctgcgtgatttaactcacacgctagtgtaaatctctacgtgagttaactaacgct 152  Q
    |||||||||||||||| |||||||||  | |||||| ||||||| |||||||||||| |||||    
T  6282498 tgttaattctgcgtgacttaactcac--gttagtgttaatctctgcgtgagttaactcacgct 6282438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 8241824 - 8241860
Alignment:
Q  115 cacgctagtgtaaatctctacgtgagttaactaacgc 151  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  8241824 cacgctagtgtaaatctctgcgtgagttaactcacgc 8241860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 2094413 - 2094361
Alignment:
Q  34 tgctcatttccaaagtaaatgataaaaatactcctacgcatattaactcatgc 86  Q
    |||||||||||||||||||||   ||||||  |||||||||||||||||||||    
T  2094413 tgctcatttccaaagtaaatgtctaaaatatccctacgcatattaactcatgc 2094361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 35392158 - 35392106
Alignment:
Q  31 ttttgctcatttccaaagtaaatgataaaaatactcctacgcatattaactca 83  Q
    ||||||||||| |||||||||||| | |||||||| |||||||| ||||||||    
T  35392158 ttttgctcattcccaaagtaaatgttcaaaatacttctacgcatgttaactca 35392106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 732003 - 732044
Alignment:
Q  110 actcacacgctagtgtaaatctctacgtgagttaactaacgc 151  Q
    |||||||||||||||| ||| |||||||||||||||| ||||    
T  732003 actcacacgctagtgttaatttctacgtgagttaactcacgc 732044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University