View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20175_low_9 (Length: 513)
Name: NF20175_low_9
Description: NF20175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20175_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 12325421 - 12325688
Alignment:
| Q |
18 |
atgaacctgatccaataataacatgttagtttcacacctgcatttgatttaaatagtatagtagactattctgatttctgagaagaacttctcatttcct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12325421 |
atgaacctgatccaataataacatgttagtttcacacctgcatttgatttaaatagtatagtagactattctgatttctgagaagaacttctcatttcct |
12325520 |
T |
|
| Q |
118 |
aaagaatgataccatgtcaatatgaagcaacattgatatagtaggctattctgaaccaacaaagctcttttgtgctaagctgcaaatagcatatcctatg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12325521 |
aaagaatgataccatgtcaatatgaagcaac----------taggctattctgaaccaacaaagctcttttgtgctaagctgcaaatagcatatcctatg |
12325610 |
T |
|
| Q |
218 |
tttccaaaaacactttagcaaaagcaggcatatcaagaacatgtgtttaaacaaaacataattagaaattaattgtct |
295 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
12325611 |
tttccaaaaatactttagcaaaagcaggcatatcaagaacaagtgtttaaacaaagcataattagaaattaaatgtct |
12325688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 408 - 513
Target Start/End: Original strand, 12325801 - 12325906
Alignment:
| Q |
408 |
cgatgatgtcgtcataaggtcgtctacttattcatgatgtactaatccaagacaataacatgaatcctctcttgctttaccggtggcatttgcacatttg |
507 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12325801 |
cgatgatgtcgtcataaggttgtctacttattcatgatgtactaatccaagacaataacatgaatcctctcttgctttaccggtggcatttgcacatttg |
12325900 |
T |
|
| Q |
508 |
aagtcc |
513 |
Q |
| |
|
|||||| |
|
|
| T |
12325901 |
aagtcc |
12325906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University