View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20176_high_1 (Length: 419)
Name: NF20176_high_1
Description: NF20176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20176_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 9 - 406
Target Start/End: Original strand, 9615028 - 9615421
Alignment:
| Q |
9 |
acatcatcactaagcttgtttcatcttctatnnnnnnnnnnnnctagactagttgcatgttttcttccttgttgatgtatatgaagnnnnnnnnnnttac |
108 |
Q |
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| T |
9615028 |
acatcatcactaagcttgtttcatcttctataaaaaaaaa---ctagactagttgcatgttttcttccttgttgatgtatatgaagaaaaaaaaa-ttac |
9615123 |
T |
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| Q |
109 |
tgaatgaaacgtgtgtataatcccagcaatgaaattaatcttatactttaatactttaaattaggaagctgagtaaaaaacgtgtgagaatattttgatg |
208 |
Q |
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| T |
9615124 |
tgaatgaaacgtgtgtataatcccaccaatgaaattaatcttatactttaatactttaaattaggaagctgagtaaaaaacgtgtgagaatattttgatg |
9615223 |
T |
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| Q |
209 |
ggagagatctctccttcaaattttgattctctcatgtggagaagattttacatatggatgttacatgaattatcacattactaaattttaccaacatgtt |
308 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9615224 |
ggagagatctctccttcaaattttgattctctcacgtggagaagattttacatgtggatgttacatgaattatcacattactaaattttaccaacatgtt |
9615323 |
T |
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| Q |
309 |
ttatatgaacttatgaggattaacaaattttaatagtgagaactcttacataattctctatgtaaaatatatttatgtataagtgcgagttagaattg |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9615324 |
ttatatgaacttatgaggattaacaaattttaatagtgagaactcttacctaactctctatgtaaaatatatttatgtataagtgcgagttagaattg |
9615421 |
T |
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