View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20176_high_2 (Length: 267)
Name: NF20176_high_2
Description: NF20176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20176_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 54700771 - 54701024
Alignment:
| Q |
1 |
tggttaaggagaaagagaagccttaatgttgaatgttgatttgagtctacggatcagcattcttctcaatatatattatgcgtgttaggcgacacaagga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54700771 |
tggttaaggagaaagagaagccttaatgttgaatgttgatttgagtctacggatctgcattcttctcaatatatattatgcgtgttaggcgacacaagga |
54700870 |
T |
|
| Q |
101 |
atctcatcttaatcacatatcaatgaggccatctaatccagatttggattcagacataattacataaatgttagagccttgtctcccccaaggaatctcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54700871 |
atctcatcttaatcacatatcaatgaggccaactaatccagatttggattcagacataattacataaatgttagagccttgtctcccccaaggaatctcc |
54700970 |
T |
|
| Q |
201 |
ccaactcatactctgtctcatttgcatgattataacattttcaatgcaaatgct |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54700971 |
ccaactcatactctgtctcatttgcatgattataacattttcaatgcaaatgct |
54701024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 54688824 - 54689077
Alignment:
| Q |
1 |
tggttaaggagaaagagaagccttaatgttgaatgttgatttgagtctacggatcagcattcttctcaatatatattatgcgtgttaggcgacacaagga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54688824 |
tggttaaggagaaagagaagccttaatgttgaatgttgatttgagtctacggatctgcattcttctcaatatatattatgcgtgttaggcgacacaagga |
54688923 |
T |
|
| Q |
101 |
atctcatcttaatcacatatcaatgaggccatctaatccagatttggattcagacataattacataaatgttagagccttgtctcccccaaggaatctcc |
200 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54688924 |
atctaatcttaatcacatatcagagaggccaactaatccagatttggattcagacataattacataaatgttagagccttgtctcccccaaggaatctcc |
54689023 |
T |
|
| Q |
201 |
ccaactcatactctgtctcatttgcatgattataacattttcaatgcaaatgct |
254 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
54689024 |
ccaactcataatctgtctcatttgcatgattataacattttcaatacagatgct |
54689077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 54693564 - 54693633
Alignment:
| Q |
140 |
agatttggattcagacataattacataaatgttagagccttgtctcccccaaggaatctccccaactcat |
209 |
Q |
| |
|
||||||||| | |||||||||| |||||||||||||| |||||||| || |||| ||| ||||||||| |
|
|
| T |
54693564 |
agatttggaattagacataattgcataaatgttagagaagtgtctccctcatggaaactctccaactcat |
54693633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University