View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20176_low_5 (Length: 203)
Name: NF20176_low_5
Description: NF20176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20176_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 27489685 - 27489527
Alignment:
| Q |
11 |
aagaatattaaaagtttaaaattatttgtcattgtataaaagtatatttgttaatttgtataataaaatacaatcacttgttaatttgggcaagtaacct |
110 |
Q |
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| T |
27489685 |
aagaatattaaaagtttaaaattatttgtcattgtataaaagtatatttgttaatttgtataataaaatacaatcacttgttaatttgggcaagtaacct |
27489586 |
T |
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| Q |
111 |
ccctttggatttgtttatacatccatttgtcatgattgttcaacagctcacttatgtta |
169 |
Q |
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| T |
27489585 |
ccctttggatttgtttatacatccatttgtcatgattgttcaacagctcacttatgtta |
27489527 |
T |
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