View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20177_high_1 (Length: 927)
Name: NF20177_high_1
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20177_high_1 |
 | |
|
| [»] scaffold0159 (3 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 859; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 859; E-Value: 0
Query Start/End: Original strand, 10 - 908
Target Start/End: Complemental strand, 29328165 - 29327267
Alignment:
| Q |
10 |
agaagcaaaggtgatggacatgtacgggaaaaaatgttctggaccagcgaaacaaggtgttcgctcggggcttgttagtggtgtaggatttggtttatct |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29328165 |
agaatcaaaggtgatggacatgtacgggaaaaaatgttctggaccagcgaaacaaggtgttcgctcggggcttgttagtggtgtaggatttggtttatct |
29328066 |
T |
|
| Q |
110 |
tttttaattctatattgcacaaatgctttcatcttctacataggatctattttagtgcatcacaggaaagcaacgtttgtagaaattttcagggtacaga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29328065 |
tttttaattctatattgcacaaatgctttcatcttctacataggatctattttagtgcatcacaggaaagcaacgtttgtagaaattttcagggtacaga |
29327966 |
T |
|
| Q |
210 |
cgattttacaatcacctaacttggcttaatttatatttactcaatgtttcctttgatctggttcttacaaaataaattatgcaggttttctttagtttga |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29327965 |
tgattttacaatcacctaacttggcttaatttatatttactcaatgtttcctttaatctggttcttacaaaataaattatgcaggttttctttagtttga |
29327866 |
T |
|
| Q |
310 |
caatgacagcaatgtccgtttcccagtcttctacattgtttcccgacactaacaaggccatagattccgcagcttcaatatttaacattcttgacagcaa |
409 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29327865 |
caatgacagcaatgtctgtttcccagtcttctacattgtttcccgacactaacaaggccatagattccgcagcttcaatatttaacattcttgacagcaa |
29327766 |
T |
|
| Q |
410 |
acctgatattgattccagcagcaataatggtgtaacacaagaaactgtcgttggcaacatcgaacttcaacacgtcaactttagttacccaacaagaccc |
509 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29327765 |
acctgatattgattccagcagcaatgatggtgtaacacaagaaactgtcgttggcaacatcgaacttcaacacgtcaactttagttacccaacaagaccc |
29327666 |
T |
|
| Q |
510 |
gacattcaaattttcaaagatttaaccctaagcatcccatctgcaaaggtaaactcttagttctacaaatcagtattgagaatgtgtaaagtatgtattt |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29327665 |
gacattcaaattttcaaagatttaaccctaagcatcccatctgcaaaggtaaacttttagttctacaaatcagtattgagaatgtgtaaagtatgtattt |
29327566 |
T |
|
| Q |
610 |
aaattgatgatatatgtatgtctttgcagactgttgctttgattggagaaagcggcagtggaaaatcaacagttagcagcctcttagagagattttatga |
709 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29327565 |
aaattgatgatatatgtatgtctttgcagactgttgctttggttggagaaagcggcagtggaaaatcaacagttatcagcctcttagagagattttatga |
29327466 |
T |
|
| Q |
710 |
ccctaattccggacgcgtattactagatggagtggatatcaaaactttcagaataagctggttgagacaacaaatgggtttggttggtcaagagcctatt |
809 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29327465 |
ccctaattccggacgcgtattactagatggagtggatatcaaaactttcagaataagctggttgagacaacaaatgggtttggttggtcaagagcctatt |
29327366 |
T |
|
| Q |
810 |
cttttcaacgaaagcattcgggccaacatagcttatggtaaagaagatggtgctacggaggatgagatcatagcagcagcaaacgcagccaatgcacac |
908 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29327365 |
cttttcaacgaaagcattcgcgccaacatagcttatggtaaagaagatggtgctacggaggatgagatcatagcagcagcgaacgcagccaatgcacac |
29327267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 10 - 908
Target Start/End: Complemental strand, 5830638 - 5829753
Alignment:
| Q |
10 |
agaagcaaaggtgatggacatgtacgggaaaaaatgttctggaccagcgaaacaaggtgttcgctcggggcttgttagtggtgtaggatttggtttatct |
109 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||| || |||||||||||||| ||||||| |||||||||||||||| |||||||||| | || |
|
|
| T |
5830638 |
agaatcaaaggtgatggacatgtacagtaaaaaatgtttaggcccagcgaaacaaggagttcgcttggggcttgttagtggtataggatttggctgctcg |
5830539 |
T |
|
| Q |
110 |
tttttaattctatattgcacaaatgctttcatcttctacataggatctattttagtgcatcacaggaaagcaacgtttgtagaaattttcagggtacaga |
209 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| || |||||||||||| || ||||||| ||| | |||||||| ||| |||| ||||||||||||| |
|
|
| T |
5830538 |
tttttagttctatattgcacaaatgctttcattttttacataggatctgttctagtgcaacacggcaaagcaacttttacagaagttttcagggtaca-- |
5830441 |
T |
|
| Q |
210 |
cgattttacaatcacctaacttggcttaatttatatttactca-atgtttcctttgatctggttcttacaaaataaattatgcaggttttctttagtttg |
308 |
Q |
| |
|
|| || ||| | ||||| || | |||||||||||| |||||| |||||||| |||||||||| |||| |||| |||||||||||| ||| |
|
|
| T |
5830440 |
--at----cactcaaccaacttagcatgctttatatttacttttatgtttattttgatctagttcttacaagataatttatacaggttttctttgcttta |
5830347 |
T |
|
| Q |
309 |
acaatgacagcaatgtccgtttcccagtcttctacattgtttcccgacactaacaaggccatagattccgcagcttcaatatttaacattcttgacagca |
408 |
Q |
| |
|
|||||||| ||||| ||||||| ||| | |||||||| || |||||||||||||||| |||||| ||||||||||||||| | ||| ||||||||| |
|
|
| T |
5830346 |
acaatgacggcaatcgccgtttcgcagacgactacattggcaccagacactaacaaggccaaagattctgcagcttcaatatttgaaattattgacagca |
5830247 |
T |
|
| Q |
409 |
aacctgatattgattccagcagcaataatggtgtaacacaagaaactgtcgttggcaacatcgaacttcaacacgtcaactttagttacccaacaagacc |
508 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||| || ||||| | || ||||||||||| |||||||||| |||||||||||| || |
|
|
| T |
5830246 |
aacctgatattgattccagcagcaatgcgggtgtaacacgagaaacagtagttggtgatattgaacttcaacatgtcaactttaattacccaacaaggcc |
5830147 |
T |
|
| Q |
509 |
cgacattcaaattttcaaagatttaaccctaagcatcccatctgcaaaggtaaactcttagttctacaaatcagtat--tgagaatgtgtaaagtatgta |
606 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| | || ||| |||||| | | | ||||||| ||||| |||| |
|
|
| T |
5830146 |
cgacattcaaattttcaaagatttaagcctaagcatcccatctgcaaaggtaatgttttggttgtacaaacccatttgttgagaatatgtaa----tgta |
5830051 |
T |
|
| Q |
607 |
tttaaattgatgatatatgtatgtctttgcagactgttgctttgattggagaaagcggcagtggaaaatcaacagttagcagcctcttagagagatttta |
706 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||| ||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5830050 |
tttaaattgatgatatatgt----ctttgcagactattgccttggttggagaaagtggcagtggaaaatcaacagttatcagcctcttagagagatttta |
5829955 |
T |
|
| Q |
707 |
tgaccctaattccggacgcgtattactagatggagtggatatcaaaactttcagaataagctggttgagacaacaaatgggtttggttggtcaagagcct |
806 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5829954 |
tgaccctaattctggacgtatattactagatggagtggatctcaaaactttcagattaagctggttgagacaacaaatggggttggttggtcaagagcct |
5829855 |
T |
|
| Q |
807 |
attcttttcaacgaaagcattcgggccaacatagcttatggtaaagaagatggtgctacggaggatgagatcatagcagcagcaaacgcagccaatgcac |
906 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| |||||| ||||||| |||||||| |||||||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
5829854 |
attcttttcaacgaaagcattcgtgctaacataggttatggaaaagaagggggtgctacagaggatgagatcattgcagcagctaacgcagcaaatgcac |
5829755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 637 - 908
Target Start/End: Original strand, 5768424 - 5768695
Alignment:
| Q |
637 |
agactgttgctttgattggagaaagcggcagtggaaaatcaacagttagcagcctcttagagagattttatgaccctaattccggacgcgtattactaga |
736 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||| || |||||||||||||||||| ||||| | || ||||| |||||||||| |
|
|
| T |
5768424 |
agactgttgctttggttggagaaagtggcagtggaaaatcaacagttataagtctcttagagagattttataaccctgactctggacgtatattactaga |
5768523 |
T |
|
| Q |
737 |
tggagtggatatcaaaactttcagaataagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgggccaac |
836 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5768524 |
tggagtggatataaaaactttcagactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaac |
5768623 |
T |
|
| Q |
837 |
atagcttatggtaaagaagatggtgctacggaggatgagatcatagcagcagcaaacgcagccaatgcacac |
908 |
Q |
| |
|
||||||||||| ||||||| ||||||| |||||||||||| || |||||||| || ||||||||||||||| |
|
|
| T |
5768624 |
atagcttatggcaaagaaggaggtgctatggaggatgagataattgcagcagctaaagcagccaatgcacac |
5768695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 637 - 908
Target Start/End: Original strand, 5826877 - 5827148
Alignment:
| Q |
637 |
agactgttgctttgattggagaaagcggcagtggaaaatcaacagttagcagcctcttagagagattttatgaccctaattccggacgcgtattactaga |
736 |
Q |
| |
|
|||||||||| ||| |||||||||| |||||||||||||||||||||| || ||||| |||||||||||| ||||| |||| |||| |||||||||| |
|
|
| T |
5826877 |
agactgttgccttggttggagaaagtggcagtggaaaatcaacagttataagtctcttggagagattttataaccctgattctggacatatattactaga |
5826976 |
T |
|
| Q |
737 |
tggagtggatatcaaaactttcagaataagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgggccaac |
836 |
Q |
| |
|
|||| || ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5826977 |
tggactgaatatcaaaactttcaaactaagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttcaacgaaagcattcgtgccaac |
5827076 |
T |
|
| Q |
837 |
atagcttatggtaaagaagatggtgctacggaggatgagatcatagcagcagcaaacgcagccaatgcacac |
908 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||| || |||||||| |||||||||||||||||| |
|
|
| T |
5827077 |
atagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacac |
5827148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 286 - 533
Target Start/End: Original strand, 5768058 - 5768305
Alignment:
| Q |
286 |
ttatgcaggttttctttagtttgacaatgacagcaatgtccgtttcccagtcttctacattgtttcccgacactaacaaggccatagattccgcagcttc |
385 |
Q |
| |
|
|||||||||||||||||||||| || || |||||| | | |||| |||||| ||| ||| ||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
5768058 |
ttatgcaggttttctttagtttaactataacagcagtaggcatttcacagtctagtaccttggcacccgacactaataaggccaaagattctgcagcttc |
5768157 |
T |
|
| Q |
386 |
aatatttaacattcttgacagcaaacctgatattgattccagcagcaataatggtgtaacacaagaaactgtcgttggcaacatcgaacttcaacacgtc |
485 |
Q |
| |
|
||||||| | ||||| ||||| || ||| ||| || |||||||||||| | ||||| ||| |||||| ||| ||| | || ||||||||||| ||| |
|
|
| T |
5768158 |
aatatttgaaattctagacagtaaccctactatcgactccagcagcaatgaaggtgtcacattagaaacagtcacaggcgatattgaacttcaacatgtc |
5768257 |
T |
|
| Q |
486 |
aactttagttacccaacaagacccgacattcaaattttcaaagattta |
533 |
Q |
| |
|
| ||| | ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5768258 |
agcttcaattacccaacaagacctcacattcaaattttcaaagattta |
5768305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 10 - 207
Target Start/End: Original strand, 5767794 - 5767991
Alignment:
| Q |
10 |
agaagcaaaggtgatggacatgtacgggaaaaaatgttctggaccagcgaaacaaggtgttcgctcggggcttgttagtggtgtaggatttggtttatct |
109 |
Q |
| |
|
|||| ||||||||||||| |||||| ||| |||||||| || |||| ||||||||||||| || |||||||| ||||||| |||||||||||| ||| |
|
|
| T |
5767794 |
agaatcaaaggtgatggatatgtaccagaagaaatgttcagggccagaaaaacaaggtgttcattcagggcttgtgagtggtgcaggatttggtttctct |
5767893 |
T |
|
| Q |
110 |
tttttaattctatattgcacaaatgctttcatcttctacataggatctattttagtgcatcacaggaaagcaacgtttgtagaaattttcagggtaca |
207 |
Q |
| |
|
||| | ||||||||||| | |||||| ||||||||||||||| | ||||||| ||| |||||||||| ||| |||| |||||| |||||| |
|
|
| T |
5767894 |
tttgtcgctctatattgcatgagtgctttttgtttctacataggatctgtcctagtgcaacacgggaaagcaacttttcaagaagttttcaaggtaca |
5767991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 5825920 - 5826060
Alignment:
| Q |
16 |
aaaggtgatggacatgtacgggaaaaaatgttctggaccagcgaaacaaggtgttcgctcggggcttgttagtggtgtaggatttggtttatctttttta |
115 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| | ||||| |||||||||||| | | ||| |||||||||||| ||||||| ||||| || ||||| |
|
|
| T |
5825920 |
aaaggtgatggatatgtaccagaaaaaatgttcagcaccagaaaaacaaggtgttaggttgggacttgttagtggtataggattcggtttctcatttttt |
5826019 |
T |
|
| Q |
116 |
attctatattgcacaaatgctttcatcttctacataggatc |
156 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
5826020 |
gctctatactgcacaaatgctttctgtttctacataggatc |
5826060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 156
Target Start/End: Original strand, 5781360 - 5781478
Alignment:
| Q |
38 |
aaaaaatgttctggaccagcgaaacaaggtgttcgctcggggcttgttagtggtgtaggatttggtttatcttttttaattctatattgcacaaatgctt |
137 |
Q |
| |
|
||||||||||| | ||||| ||||||||||| | | ||| |||||||||||||||||||||||||| | ||||| ||| || |||||||||| || |
|
|
| T |
5781360 |
aaaaaatgttcagcaccagaataacaaggtgttaggttgggacttgttagtggtgtaggatttggtttctaattttttgctctttactgcacaaatgatt |
5781459 |
T |
|
| Q |
138 |
tcatcttctacataggatc |
156 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
5781460 |
tctgtttctacataggatc |
5781478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 357 - 412
Target Start/End: Original strand, 5781926 - 5781981
Alignment:
| Q |
357 |
actaacaaggccatagattccgcagcttcaatatttaacattcttgacagcaaacc |
412 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||| | ||||| ||||||||||| |
|
|
| T |
5781926 |
actaacaaggccaaagattctacagcttcaatatttgaaattctagacagcaaacc |
5781981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 357 - 412
Target Start/End: Original strand, 5826474 - 5826529
Alignment:
| Q |
357 |
actaacaaggccatagattccgcagcttcaatatttaacattcttgacagcaaacc |
412 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||| | ||||| ||||||||||| |
|
|
| T |
5826474 |
actaacaaggccaaagattctacagcttcaatatttgaaattctagacagcaaacc |
5826529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 156
Target Start/End: Original strand, 26692 - 26810
Alignment:
| Q |
38 |
aaaaaatgttctggaccagcgaaacaaggtgttcgctcggggcttgttagtggtgtaggatttggtttatcttttttaattctatattgcacaaatgctt |
137 |
Q |
| |
|
||||||||||| | ||||| ||||||||||| | | ||| |||||||||||||||||||||||||| | ||||| ||| || |||||||||| || |
|
|
| T |
26692 |
aaaaaatgttcagcaccagaataacaaggtgttaggttgggacttgttagtggtgtaggatttggtttctaattttttgctctttactgcacaaatgatt |
26791 |
T |
|
| Q |
138 |
tcatcttctacataggatc |
156 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
26792 |
tctgtttctacataggatc |
26810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 357 - 412
Target Start/End: Original strand, 27258 - 27313
Alignment:
| Q |
357 |
actaacaaggccatagattccgcagcttcaatatttaacattcttgacagcaaacc |
412 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||| | ||||| ||||||||||| |
|
|
| T |
27258 |
actaacaaggccaaagattctacagcttcaatatttgaaattctagacagcaaacc |
27313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 357 - 412
Target Start/End: Original strand, 35389 - 35444
Alignment:
| Q |
357 |
actaacaaggccatagattccgcagcttcaatatttaacattcttgacagcaaacc |
412 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||| | ||||| ||||||||||| |
|
|
| T |
35389 |
actaacaaggccaaagattctacagcttcaatatttgaaattctagacagcaaacc |
35444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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