View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20177_high_13 (Length: 467)

Name: NF20177_high_13
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20177_high_13
NF20177_high_13
[»] chr4 (65 HSPs)
chr4 (76-172)||(46484656-46484747)
chr4 (12-75)||(36871165-36871228)
chr4 (13-76)||(31413784-31413847)
chr4 (12-74)||(9095949-9096011)
chr4 (12-76)||(1868890-1868954)
chr4 (12-75)||(24310518-24310581)
chr4 (12-74)||(46791988-46792050)
chr4 (12-75)||(7795025-7795088)
chr4 (12-75)||(8848711-8848774)
chr4 (38-76)||(29577470-29577508)
chr4 (38-75)||(36110134-36110171)
chr4 (12-76)||(21766557-21766621)
chr4 (12-76)||(45678273-45678337)
chr4 (18-77)||(9827986-9828045)
chr4 (12-75)||(15515795-15515858)
chr4 (38-77)||(43864032-43864071)
chr4 (38-77)||(48791631-48791670)
chr4 (18-76)||(46686244-46686301)
chr4 (12-74)||(54848150-54848212)
chr4 (18-75)||(37731926-37731983)
chr4 (12-77)||(41010166-41010231)
chr4 (42-75)||(43511685-43511718)
chr4 (27-75)||(4974111-4974159)
chr4 (45-77)||(8485575-8485607)
chr4 (38-78)||(31318750-31318790)
chr4 (12-78)||(32294757-32294820)
chr4 (38-74)||(38960694-38960730)
chr4 (12-75)||(1580280-1580342)
chr4 (38-77)||(1987747-1987786)
chr4 (25-76)||(4106053-4106103)
chr4 (38-77)||(4577555-4577594)
chr4 (32-75)||(36488492-36488535)
chr4 (12-63)||(46799779-46799830)
chr4 (25-75)||(19748648-19748698)
chr4 (25-75)||(19791108-19791158)
chr4 (38-76)||(22893868-22893906)
chr4 (38-76)||(22945536-22945574)
chr4 (15-77)||(39605977-39606038)
chr4 (18-76)||(42490919-42490977)
chr4 (38-76)||(54803362-54803400)
chr4 (12-53)||(4577590-4577631)
chr4 (42-75)||(4949272-4949305)
chr4 (12-75)||(8614190-8614250)
chr4 (38-75)||(9776366-9776403)
chr4 (18-75)||(28899218-28899275)
chr4 (20-77)||(32621636-32621693)
chr4 (15-76)||(33776907-33776967)
chr4 (38-75)||(36488358-36488395)
chr4 (18-75)||(49906143-49906199)
chr4 (47-76)||(50890116-50890145)
chr4 (18-51)||(55960735-55960768)
chr4 (12-76)||(4511824-4511888)
chr4 (18-74)||(5386385-5386441)
chr4 (49-77)||(9472558-9472586)
chr4 (33-77)||(22007831-22007875)
chr4 (32-76)||(27384186-27384230)
chr4 (49-77)||(35017151-35017179)
chr4 (49-77)||(40629385-40629413)
chr4 (40-76)||(41849690-41849726)
chr4 (48-76)||(42853938-42853966)
chr4 (48-76)||(44272854-44272882)
chr4 (42-78)||(46355331-46355367)
chr4 (49-77)||(47014937-47014965)
chr4 (45-77)||(48650297-48650329)
chr4 (49-77)||(53781881-53781909)
[»] chr2 (49 HSPs)
chr2 (12-77)||(22296126-22296191)
chr2 (12-76)||(6885477-6885541)
chr2 (12-76)||(40115525-40115589)
chr2 (12-75)||(27538913-27538976)
chr2 (12-75)||(45202129-45202192)
chr2 (12-74)||(24491674-24491738)
chr2 (18-75)||(24727426-24727483)
chr2 (12-72)||(11828817-11828877)
chr2 (12-72)||(38598346-38598406)
chr2 (12-75)||(8757555-8757618)
chr2 (15-77)||(9647142-9647203)
chr2 (18-76)||(38724321-38724379)
chr2 (12-74)||(38777903-38777965)
chr2 (12-76)||(43205106-43205167)
chr2 (12-73)||(43076312-43076373)
chr2 (32-76)||(694279-694323)
chr2 (14-76)||(1096342-1096401)
chr2 (25-77)||(10550469-10550521)
chr2 (12-76)||(13881105-13881169)
chr2 (12-76)||(14021230-14021294)
chr2 (15-77)||(35008101-35008160)
chr2 (12-75)||(305966-306029)
chr2 (18-77)||(15141471-15141530)
chr2 (14-75)||(23141367-23141425)
chr2 (14-75)||(23553157-23553215)
chr2 (25-76)||(42607540-42607591)
chr2 (18-76)||(4138188-4138246)
chr2 (42-76)||(12208441-12208475)
chr2 (38-76)||(18531600-18531638)
chr2 (42-76)||(30339992-30340026)
chr2 (18-76)||(40700206-40700264)
chr2 (37-75)||(44897626-44897664)
chr2 (42-75)||(5852474-5852507)
chr2 (19-76)||(10711735-10711792)
chr2 (38-75)||(18749397-18749434)
chr2 (27-76)||(27329121-27329170)
chr2 (48-77)||(28494857-28494886)
chr2 (38-75)||(35705950-35705987)
chr2 (38-75)||(38021356-38021393)
chr2 (32-76)||(305000-305044)
chr2 (12-76)||(4263861-4263924)
chr2 (49-77)||(4319767-4319795)
chr2 (48-76)||(8352834-8352862)
chr2 (49-77)||(10288148-10288176)
chr2 (49-77)||(14891123-14891151)
chr2 (38-74)||(17159567-17159603)
chr2 (49-77)||(23045091-23045119)
chr2 (37-77)||(26387892-26387932)
chr2 (56-88)||(36383449-36383481)
[»] chr8 (33 HSPs)
chr8 (12-76)||(14233641-14233705)
chr8 (13-75)||(41776186-41776248)
chr8 (12-76)||(13924021-13924085)
chr8 (12-75)||(6243045-6243108)
chr8 (18-76)||(38939192-38939250)
chr8 (12-76)||(25430656-25430720)
chr8 (12-75)||(23265351-23265414)
chr8 (12-75)||(32777896-32777959)
chr8 (12-75)||(37471654-37471717)
chr8 (12-76)||(37392125-37392189)
chr8 (12-72)||(42768119-42768179)
chr8 (12-76)||(43590704-43590768)
chr8 (25-75)||(36675336-36675386)
chr8 (12-73)||(8233493-8233554)
chr8 (25-77)||(7010683-7010735)
chr8 (18-74)||(32020468-32020524)
chr8 (12-75)||(38174230-38174294)
chr8 (42-77)||(34578415-34578450)
chr8 (36-75)||(35345984-35346023)
chr8 (12-75)||(45081398-45081461)
chr8 (18-77)||(45405822-45405881)
chr8 (45-75)||(1646256-1646286)
chr8 (38-72)||(3893432-3893466)
chr8 (42-76)||(22203253-22203287)
chr8 (38-76)||(28156202-28156240)
chr8 (42-76)||(35701865-35701899)
chr8 (12-77)||(37294605-37294668)
chr8 (26-76)||(43419878-43419928)
chr8 (12-76)||(9963695-9963760)
chr8 (42-75)||(21649206-21649239)
chr8 (42-75)||(27300346-27300379)
chr8 (19-76)||(39884492-39884549)
chr8 (45-77)||(23708974-23709006)
[»] chr3 (38 HSPs)
chr3 (12-76)||(35368621-35368685)
chr3 (12-75)||(29057659-29057722)
chr3 (12-76)||(29846888-29846952)
chr3 (12-76)||(50745559-50745623)
chr3 (12-75)||(43149340-43149403)
chr3 (15-77)||(48490513-48490575)
chr3 (12-76)||(49361832-49361896)
chr3 (15-75)||(47484290-47484351)
chr3 (15-76)||(48117346-48117407)
chr3 (12-76)||(43220138-43220202)
chr3 (38-76)||(9159070-9159108)
chr3 (12-76)||(21481777-21481838)
chr3 (18-75)||(26548777-26548834)
chr3 (25-77)||(38957522-38957573)
chr3 (40-76)||(53021188-53021224)
chr3 (12-75)||(3484770-3484833)
chr3 (38-77)||(7351672-7351711)
chr3 (38-77)||(34145572-34145611)
chr3 (18-76)||(46952948-46953006)
chr3 (15-53)||(48205078-48205116)
chr3 (15-77)||(50318383-50318444)
chr3 (20-77)||(54007473-54007530)
chr3 (18-76)||(55361236-55361294)
chr3 (12-53)||(7351635-7351676)
chr3 (12-53)||(9159033-9159074)
chr3 (18-75)||(9719455-9719512)
chr3 (42-75)||(14839083-14839116)
chr3 (18-75)||(23868981-23869038)
chr3 (26-75)||(45205288-45205337)
chr3 (20-77)||(47683799-47683856)
chr3 (47-75)||(6178468-6178496)
chr3 (48-76)||(36799397-36799425)
chr3 (34-74)||(43883314-43883354)
chr3 (42-74)||(44689793-44689825)
chr3 (12-76)||(44937218-44937282)
chr3 (48-76)||(45528986-45529014)
chr3 (48-76)||(50559256-50559284)
chr3 (25-77)||(50876372-50876424)
[»] chr7 (36 HSPs)
chr7 (12-75)||(33465036-33465099)
chr7 (12-77)||(49142514-49142579)
chr7 (12-75)||(25272602-25272665)
chr7 (12-75)||(27866534-27866597)
chr7 (12-77)||(24380718-24380783)
chr7 (12-76)||(40108134-40108198)
chr7 (5-76)||(21589932-21590003)
chr7 (15-76)||(43942648-43942708)
chr7 (12-75)||(37848617-37848680)
chr7 (42-76)||(27704434-27704468)
chr7 (12-74)||(38547287-38547349)
chr7 (38-76)||(41538481-41538519)
chr7 (15-72)||(29923685-29923742)
chr7 (42-75)||(40207838-40207871)
chr7 (12-76)||(6822530-6822594)
chr7 (38-74)||(17039158-17039194)
chr7 (38-74)||(23034347-23034383)
chr7 (12-76)||(30391158-30391222)
chr7 (17-77)||(45420062-45420122)
chr7 (38-72)||(640395-640429)
chr7 (42-76)||(28548259-28548293)
chr7 (18-76)||(43213318-43213376)
chr7 (47-77)||(45154582-45154612)
chr7 (42-76)||(48522155-48522189)
chr7 (42-76)||(48639421-48639455)
chr7 (12-53)||(1709317-1709358)
chr7 (15-76)||(3937121-3937182)
chr7 (19-76)||(5905969-5906026)
chr7 (38-75)||(7295450-7295487)
chr7 (12-53)||(17039190-17039231)
chr7 (43-76)||(23389632-23389665)
chr7 (48-77)||(40693572-40693601)
chr7 (38-75)||(42598242-42598279)
chr7 (25-77)||(27570353-27570405)
chr7 (42-74)||(34349065-34349097)
chr7 (38-74)||(44564757-44564792)
[»] scaffold0286 (1 HSPs)
scaffold0286 (12-76)||(17048-17112)
[»] chr6 (18 HSPs)
chr6 (12-76)||(2165297-2165361)
chr6 (12-76)||(2176930-2176994)
chr6 (12-75)||(9395334-9395397)
chr6 (12-76)||(17442832-17442896)
chr6 (12-76)||(25567487-25567551)
chr6 (12-75)||(16121163-16121226)
chr6 (12-75)||(32135428-32135491)
chr6 (18-75)||(32644623-32644680)
chr6 (12-75)||(22422164-22422224)
chr6 (12-76)||(25561937-25562001)
chr6 (12-76)||(26101451-26101515)
chr6 (18-76)||(1196057-1196115)
chr6 (12-74)||(16865565-16865627)
chr6 (26-72)||(31413539-31413585)
chr6 (38-75)||(6997584-6997621)
chr6 (48-77)||(20712065-20712094)
chr6 (42-75)||(27790273-27790306)
chr6 (38-78)||(30622021-30622061)
[»] chr5 (33 HSPs)
chr5 (12-76)||(12203157-12203221)
chr5 (15-77)||(43153060-43153122)
chr5 (12-76)||(38919862-38919924)
chr5 (12-77)||(40201117-40201182)
chr5 (15-75)||(8442170-8442230)
chr5 (13-76)||(9957199-9957262)
chr5 (12-70)||(7080546-7080604)
chr5 (12-76)||(11878439-11878503)
chr5 (12-76)||(14206399-14206463)
chr5 (32-75)||(38387610-38387653)
chr5 (18-76)||(4434481-4434539)
chr5 (20-76)||(32732123-32732179)
chr5 (42-77)||(25585494-25585529)
chr5 (38-77)||(41192585-41192624)
chr5 (42-76)||(3031833-3031867)
chr5 (38-76)||(5996666-5996704)
chr5 (42-76)||(14523002-14523036)
chr5 (42-76)||(18729327-18729361)
chr5 (38-76)||(20985563-20985601)
chr5 (12-74)||(33910085-33910147)
chr5 (42-76)||(39032642-39032676)
chr5 (12-77)||(8725419-8725484)
chr5 (12-53)||(20985526-20985567)
chr5 (12-53)||(22653688-22653729)
chr5 (27-76)||(24486895-24486944)
chr5 (42-75)||(31748336-31748369)
chr5 (12-53)||(34693213-34693254)
chr5 (12-77)||(39458666-39458731)
chr5 (12-76)||(13734357-13734421)
chr5 (48-76)||(19844353-19844381)
chr5 (48-76)||(29803224-29803252)
chr5 (48-76)||(34428159-34428187)
chr5 (48-76)||(35165678-35165706)
[»] chr1 (37 HSPs)
chr1 (12-76)||(11121491-11121555)
chr1 (12-76)||(30414874-30414938)
chr1 (12-74)||(50460709-50460771)
chr1 (14-75)||(16252758-16252819)
chr1 (38-77)||(22674710-22674749)
chr1 (12-75)||(35030759-35030822)
chr1 (14-75)||(48689570-48689628)
chr1 (38-76)||(1100216-1100254)
chr1 (18-76)||(46903480-46903538)
chr1 (18-75)||(644701-644758)
chr1 (12-75)||(29094743-29094803)
chr1 (12-53)||(40118712-40118753)
chr1 (29-74)||(51080104-51080148)
chr1 (12-76)||(3826812-3826876)
chr1 (12-76)||(40596051-40596115)
chr1 (12-75)||(48256920-48256981)
chr1 (12-75)||(41507191-41507254)
chr1 (42-77)||(41564918-41564953)
chr1 (18-77)||(43757597-43757656)
chr1 (17-76)||(45272162-45272221)
chr1 (48-78)||(8905725-8905755)
chr1 (37-75)||(12990502-12990540)
chr1 (18-76)||(19427520-19427578)
chr1 (18-76)||(21446221-21446279)
chr1 (37-75)||(41425242-41425280)
chr1 (18-76)||(48325781-48325839)
chr1 (12-79)||(12972701-12972765)
chr1 (38-75)||(22331366-22331403)
chr1 (42-75)||(23472108-23472141)
chr1 (38-75)||(26760562-26760599)
chr1 (18-75)||(40139126-40139183)
chr1 (38-75)||(43105105-43105142)
chr1 (42-75)||(50796002-50796035)
chr1 (15-75)||(51718626-51718687)
chr1 (49-77)||(1689389-1689417)
chr1 (12-72)||(4618658-4618718)
chr1 (45-77)||(8577543-8577575)
[»] scaffold0172 (1 HSPs)
scaffold0172 (32-73)||(9296-9337)
[»] scaffold0054 (1 HSPs)
scaffold0054 (18-76)||(31603-31661)
[»] scaffold0651 (1 HSPs)
scaffold0651 (38-78)||(4880-4920)
[»] scaffold0014 (1 HSPs)
scaffold0014 (42-77)||(145059-145094)
[»] scaffold0662 (1 HSPs)
scaffold0662 (49-77)||(1076-1104)
[»] scaffold0504 (1 HSPs)
scaffold0504 (26-74)||(11159-11207)


Alignment Details
Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 65)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 46484656 - 46484747
Alignment:
Q  76 tagcaataatgaggtaaaagttcaataaatacggaaatatttaaagataaagattagattgatctcaaaataagtcaccaaatagtaatgcatacac 172  Q
    ||||||||||| |||| ||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46484656 tagcaataatgtggtacaagttcaa-----acggaaatatttaaagataaagattagattgatctcaaaataagtcaccaaatagtaatgcatacac 46484747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 36871165 - 36871228
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  36871165 aagaagataatgcgaatataagagagaaagttgtacaaaaatagttgtacaaatatcatttctc 36871228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 31413784 - 31413847
Alignment:
Q  13 agaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||  ||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  31413784 agaagataatgtcagtatgagagagaaagttgtacaaaaatagttgtacaaatatcatttctct 31413847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 9096011 - 9095949
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttct 74  Q
    |||||||||||| |||||| ||||||||||||||||||||||| ||||||||||| |||||||    
T  9096011 aagaagataatgtgagtatgagagagaaaattgtacaaaaataattgtacaaataacatttct 9095949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 1868890 - 1868954
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| |||||| ||| ||||| |||||||||||| ||||||||||||||||||||||    
T  1868890 aagaagataatgtgagtatgagatagaaagttgtacaaaaatggttgtacaaatatcatttctct 1868954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 24310518 - 24310581
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||||| |||| |||||| ||||||||| |||||||||||| |||||||||||||||||||||    
T  24310518 aagaagaaaatgtgagtatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctc 24310581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 46791988 - 46792050
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttct 74  Q
    |||||||||||| |||||| ||| |||||||||||||||||| |||| |||||||||||||||    
T  46791988 aagaagataatgtgagtatgagaaagaaaattgtacaaaaattgttgcacaaatatcatttct 46792050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 7795088 - 7795025
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||||||||||  ||||| ||| ||||| |||||||||||| |||||||||||||||||||||    
T  7795088 aagaagataatgtaagtatgagaaagaaagttgtacaaaaatggttgtacaaatatcatttctc 7795025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 8848774 - 8848711
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||| |||| | ||||||||||||||| |||| | |||||||||||||||||||||    
T  8848774 aagaagataatgtgagtgtaagagagaaaattgtataaaatttgttgtacaaatatcatttctc 8848711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 29577470 - 29577508
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29577470 aaaattgtacaaaaatagttgtacaaatatcatttctct 29577508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 36110171 - 36110134
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36110171 aaaattgtacaaaaatagttgtacaaatatcatttctc 36110134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 21766621 - 21766557
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| |||||| ||||||||  ||||||||||||  || ||||||||||||||||||    
T  21766621 aagaagataatgtgagtatgagagagaaggttgtacaaaaatgattatacaaatatcatttctct 21766557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 45678337 - 45678273
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| | |||| ||||| ||||||||||||||||  ||||||||||| |||||||||    
T  45678337 aagaagataatgtgggtatgagagataaaattgtacaaaaatgattgtacaaataacatttctct 45678273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 9827986 - 9828045
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||| |||| | ||||||||| |||||| ||||| |||||||||||||||||||||||    
T  9827986 ataatgtgagtgtgagagagaaagttgtactaaaatggttgtacaaatatcatttctcta 9828045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 15515858 - 15515795
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||| |||||| ||||||||| ||||   ||||||||||||| |||||||||||||    
T  15515858 aagaagataatgtgagtatgagagagaaagttgtcataaaatagttgtaccaatatcatttctc 15515795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 43864071 - 43864032
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  43864071 aaaattgtaccaaaatagttgtacaaatatcatttctcta 43864032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 48791631 - 48791670
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  48791631 aaaattatacaaaaatagttgtacaaatatcatttctcta 48791670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 46686301 - 46686244
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||| |||||| ||||||||| |||||||||| | ||||||||||||||||||||||    
T  46686301 ataatgtgagtatgagagagaaagttgtacaaaa-tggttgtacaaatatcatttctct 46686244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 54848212 - 54848150
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttct 74  Q
    ||||| |||||| || ||| ||||||||  |||||||||||| ||||||||||||||||||||    
T  54848212 aagaaaataatgtgaatatgagagagaaggttgtacaaaaatggttgtacaaatatcatttct 54848150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 37731983 - 37731926
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||| |||||| ||||||||| |||||| |||||  ||||||||||||||||||||    
T  37731983 ataatgtgagtatgagagagaaagttgtaccaaaatgattgtacaaatatcatttctc 37731926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 41010166 - 41010231
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    ||||| |||||| |||||| ||||| | ||||||||||||||  ||||| ||||||||||||||||    
T  41010166 aagaaaataatgtgagtataagagaaagaattgtacaaaaatgattgtataaatatcatttctcta 41010231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 43511685 - 43511718
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||||||||||||||||||||||||||||||||    
T  43511685 ttgtacaaaaatagttgtacaaatatcatttctc 43511718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 4974159 - 4974111
Alignment:
Q  27 gtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||| ||||||||| ||||  ||||||||||||||||||||||||||||    
T  4974159 gtatgagagagaaagttgttaaaaaatagttgtacaaatatcatttctc 4974111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 8485607 - 8485575
Alignment:
Q  45 tacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||||||||||||||||||||||||||    
T  8485607 tacaaaaatagttgtacaaatatcatttctcta 8485575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 31318790 - 31318750
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctctag 78  Q
    |||||||||| ||||| ||||||||||||||||||||||||    
T  31318790 aaaattgtaccaaaatggttgtacaaatatcatttctctag 31318750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 32294757 - 32294820
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctctag 78  Q
    |||||||||||| |||||| ||||||||  |||||||||   |||| ||||||||||||||||||||    
T  32294757 aagaagataatgtgagtatgagagagaaggttgtacaaa---agttatacaaatatcatttctctag 32294820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 38960694 - 38960730
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttct 74  Q
    |||||||||||||||| ||||||||||||||||||||    
T  38960694 aaaattgtacaaaaatggttgtacaaatatcatttct 38960730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 1580280 - 1580342
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||| ||||||| |||||| |||||||||||||| || |||  |||||||||||||||||||||    
T  1580280 aagaggataatgtgagtatgagagagaaaattgt-cacaaagtgttgtacaaatatcatttctc 1580342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 1987747 - 1987786
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||| ||||| |||||||||||||||||||||||    
T  1987747 aaaattgtactaaaatggttgtacaaatatcatttctcta 1987786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 4106103 - 4106053
Alignment:
Q  25 gagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||| ||||||||||||||| ||||| | |||||||||||||||||||||    
T  4106103 gagtatgagagagaaaattgtaaaaaaaaa-ttgtacaaatatcatttctct 4106053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 4577594 - 4577555
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||| ||||| |||||||||||||||||||||||    
T  4577594 aaaattgtacgaaaatggttgtacaaatatcatttctcta 4577555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 36488492 - 36488535
Alignment:
Q  32 agagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||||||| |||||||||||||||| || ||||||||||||||    
T  36488492 agagagaaagttgtacaaaaatagttctataaatatcatttctc 36488535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 46799830 - 46799779
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaa 63  Q
    |||||||||||| |||||| ||||||||  |||||||||||| |||||||||    
T  46799830 aagaagataatgtgagtatgagagagaaggttgtacaaaaatggttgtacaa 46799779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 19748698 - 19748648
Alignment:
Q  25 gagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||||||||||||||||| |  |||||||||| ||||||||| |||||||    
T  19748698 gagtattagagagaaaattatcaaaaaatagttatacaaatatgatttctc 19748648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 19791108 - 19791158
Alignment:
Q  25 gagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||||||||||||||||| |  |||||||||| ||||||||| |||||||    
T  19791108 gagtattagagagaaaattatcaaaaaatagttatacaaatatgatttctc 19791158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 22893906 - 22893868
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  22893906 aaaattgtacaaaaatgattgtacaaatatcatttctct 22893868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 22945574 - 22945536
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  22945574 aaaattgtacaaaaatgattgtacaaatatcatttctct 22945536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 39606038 - 39605977
Alignment:
Q  15 aagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    ||||||||| |||||| ||||||||| |||| ||||||| ||||| || ||||||||||||||    
T  39606038 aagataatgtgagtatgagagagaaagttgt-caaaaatggttgttcatatatcatttctcta 39605977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 42490977 - 42490919
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||| |||||| ||||||||| ||||  |||| | ||||||||||||||||||||||    
T  42490977 ataatgtgagtatgagagagaaagttgtcaaaaagtggttgtacaaatatcatttctct 42490919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 54803362 - 54803400
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  54803362 aaaattgcaccaaaatagttgtacaaatatcatttctct 54803400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 4577631 - 4577590
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaat 53  Q
    |||||||||||| |||||| ||||||||| ||||||||||||    
T  4577631 aagaagataatgtgagtatgagagagaaagttgtacaaaaat 4577590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 4949272 - 4949305
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||| |||||||||||||||||||||||||||    
T  4949272 ttgtaccaaaatagttgtacaaatatcatttctc 4949305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 8614250 - 8614190
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||| |||||| |||||| ||||||||  ||||||||||   |||||||||||||||||||||    
T  8614250 aagaaaataatgtgagtatgagagagaaggttgtacaaaa---gttgtacaaatatcatttctc 8614190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 9776366 - 9776403
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  9776366 aaaattgtcaaaaaatagttgtacaaatatcatttctc 9776403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 28899218 - 28899275
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||| || ||| ||||||||| |||||| |||||  ||||||||||||||||||||    
T  28899218 ataatgtgaatatgagagagaaagttgtaccaaaatgattgtacaaatatcatttctc 28899275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 32621693 - 32621636
Alignment:
Q  20 aatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||| |||||||||||||||| ||||   ||||| ||||| |||||||||||||||||    
T  32621693 aatgtgagtattagagagaaagttgtcacaaaatggttgtgcaaatatcatttctcta 32621636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 33776967 - 33776907
Alignment:
Q  15 aagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||||||| || ||| | ||| ||| ||||||||||||| |||||||||||||||||||||    
T  33776967 aagataatgtgaatatgaaagataaagttgtacaaaaata-ttgtacaaatatcatttctct 33776907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 36488395 - 36488358
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  36488395 aaaattgtacaaaaataattgttcaaatatcatttctc 36488358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 49906199 - 49906143
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||| ||||||  ||||||||||||| || |||| |||||||||||||||||||||    
T  49906199 ataatgtgagtatgtgagagaaaattgt-cacaaatggttgtacaaatatcatttctc 49906143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 76
Target Start/End: Original strand, 50890116 - 50890145
Alignment:
Q  47 caaaaatagttgtacaaatatcatttctct 76  Q
    ||||||||||||||||||||||||||||||    
T  50890116 caaaaatagttgtacaaatatcatttctct 50890145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 55960768 - 55960735
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaa 51  Q
    ||||||||||||| ||||||||||||||||||||    
T  55960768 ataatgcgagtatgagagagaaaattgtacaaaa 55960735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 4511888 - 4511824
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||| |||||| |||||| ||||||||| ||||   ||||| ||| ||||||||||||||||||    
T  4511888 aagaatataatgtgagtatgagagagaaagttgtcataaaatggttatacaaatatcatttctct 4511824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 5386441 - 5386385
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttct 74  Q
    |||||| |||||| ||||||||| ||||  |||||| ||||| ||||||||||||||    
T  5386441 ataatgtgagtatgagagagaaagttgtcaaaaaatggttgttcaaatatcatttct 5386385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 9472558 - 9472586
Alignment:
Q  49 aaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||||||||||||||||||||||    
T  9472558 aaaatagttgtacaaatatcatttctcta 9472586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 22007875 - 22007831
Alignment:
Q  33 gagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||| | |||| |||||||| ||||||||||||||||||||||    
T  22007875 gagagagagttgtccaaaaataattgtacaaatatcatttctcta 22007831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 27384230 - 27384186
Alignment:
Q  32 agagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||||||| |||||  ||||| ||||||||||||||||||||||    
T  27384230 agagagaaagttgtaataaaatggttgtacaaatatcatttctct 27384186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 35017179 - 35017151
Alignment:
Q  49 aaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||||||||||||||||||||||    
T  35017179 aaaatagttgtacaaatatcatttctcta 35017151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 40629385 - 40629413
Alignment:
Q  49 aaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||||||||||||||||||||||    
T  40629385 aaaatagttgtacaaatatcatttctcta 40629413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 41849726 - 41849690
Alignment:
Q  40 aattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  41849726 aattgtaaaaagatagttgtacaaatatcatttctct 41849690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #60
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 76
Target Start/End: Complemental strand, 42853966 - 42853938
Alignment:
Q  48 aaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||||||||||||||||||||    
T  42853966 aaaaatagttgtacaaatatcatttctct 42853938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #61
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 76
Target Start/End: Original strand, 44272854 - 44272882
Alignment:
Q  48 aaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||||||||||||||||||||    
T  44272854 aaaaatagttgtacaaatatcatttctct 44272882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #62
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 46355331 - 46355367
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctctag 78  Q
    |||||||||| | ||||||||||||||||||||||||    
T  46355331 ttgtacaaaagtggttgtacaaatatcatttctctag 46355367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #63
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 47014965 - 47014937
Alignment:
Q  49 aaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||||||||||||||||||||||    
T  47014965 aaaatagttgtacaaatatcatttctcta 47014937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #64
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 48650297 - 48650329
Alignment:
Q  45 tacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||||||||||||||| ||||||||||    
T  48650297 tacaaaaatagttgtacaaataacatttctcta 48650329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #65
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 53781881 - 53781909
Alignment:
Q  49 aaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||||||||||||||||||||||    
T  53781881 aaaatagttgtacaaatatcatttctcta 53781909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 49)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 22296126 - 22296191
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  22296126 aagaagataatgtgagtatcagagagaaaattgtacaaaaatggttgtacaaatatcatttctcta 22296191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 6885477 - 6885541
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| |||||| ||||||||||||||| ||||||||||||||||| |||||||||||    
T  6885477 aagaagataatgtgagtatgagagagaaaattgtataaaaatagttgtacaaaaatcatttctct 6885541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 40115589 - 40115525
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||||||||||  ||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  40115589 aagaagataatgttagtatgagagagaaaattatacaaaaatagttgtacaaatatcatttctct 40115525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 27538913 - 27538976
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||| |||||| | ||||||| |||||||||||| |||||||||||||||||||||    
T  27538913 aagaagataatgtgagtatcatagagaaagttgtacaaaaatggttgtacaaatatcatttctc 27538976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 45202129 - 45202192
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||| || ||| ||||||||| ||||| |||||| |||||||||||||||||||||    
T  45202129 aagaagataatgtgaatatgagagagaaagttgtaaaaaaatggttgtacaaatatcatttctc 45202192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 24491674 - 24491738
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaa--tagttgtacaaatatcatttct 74  Q
    |||||||||||| |||||  |||||||||||||||||||||  | ||||||||||||||||||||    
T  24491674 aagaagataatgtgagtacgagagagaaaattgtacaaaaaattggttgtacaaatatcatttct 24491738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 24727483 - 24727426
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||| |||||| ||||||||| |||||| ||||| |||||||||||||||||||||    
T  24727483 ataatgtgagtatgagagagaaagttgtaccaaaatggttgtacaaatatcatttctc 24727426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 11828817 - 11828877
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcattt 72  Q
    |||||||||| | || ||| ||||||||| |||||||||||| ||||||||||||||||||    
T  11828817 aagaagataacgtgaatatgagagagaaagttgtacaaaaatggttgtacaaatatcattt 11828877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 38598346 - 38598406
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcattt 72  Q
    |||||||||||| |||||| ||||||||  |||||||||||| ||| ||||||||||||||    
T  38598346 aagaagataatgtgagtatgagagagaaggttgtacaaaaatggttatacaaatatcattt 38598406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 8757618 - 8757555
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||| |||||| ||||| ||| ||||| |||||| |||||||||||| ||||||||    
T  8757618 aagaagataatgtgagtatgagagataaagttgtataaaaatggttgtacaaataacatttctc 8757555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 9647203 - 9647142
Alignment:
Q  15 aagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    ||||||||  |||||| ||||||||| ||||| |||||||||||| |||||||||||||||||    
T  9647203 aagataatatgagtatgagagagaaagttgta-aaaaatagttgttcaaatatcatttctcta 9647142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 38724321 - 38724379
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||| |||| | |||||||||||| ||| ||||| ||||||||||||||||||||||    
T  38724321 ataatgtgagtgtgagagagaaaattatactaaaatggttgtacaaatatcatttctct 38724379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 38777965 - 38777903
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttct 74  Q
    |||||||||||| || ||| ||||||||||||||| ||||||  ||||||||||||| |||||    
T  38777965 aagaagataatgtgaatatgagagagaaaattgtataaaaatgattgtacaaatatcctttct 38777903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 43205167 - 43205106
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| |||||| ||||||||  |||||||||   |||||||||||||||||||||||    
T  43205167 aagaagataatgtgagtatgagagagaatgttgtacaaa---agttgtacaaatatcatttctct 43205106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 43076373 - 43076312
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttc 73  Q
    |||||||| ||  |||||| ||||||||||||||||||||||  || |||||||||||||||    
T  43076373 aagaagatgatatgagtatgagagagaaaattgtacaaaaatgattatacaaatatcatttc 43076312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 694323 - 694279
Alignment:
Q  32 agagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||    
T  694323 agagagaaaattgtcaaaaaatggttgtacaaatatcatttctct 694279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 1096342 - 1096401
Alignment:
Q  14 gaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||| |||||| ||||| |||||| |||||||   ||||||||||||||||||||||    
T  1096342 gaagataatgtgagtatgagagataaaattatacaaaa---gttgtacaaatatcatttctct 1096401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 10550469 - 10550521
Alignment:
Q  25 gagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||| ||||||||| ||||  ||||||||||||||| ||||||||||||||    
T  10550469 gagtatgagagagaaagttgtgaaaaaatagttgtacatatatcatttctcta 10550521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 13881169 - 13881105
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| |||||| | ||| ||| ||||||||||||  ||||||||| |||||||||||    
T  13881169 aagaagataatgtgagtatgaaagataaagttgtacaaaaatgattgtacaaacatcatttctct 13881105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 14021294 - 14021230
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| |||||| | ||| ||| ||||||||||||  ||||||||| |||||||||||    
T  14021294 aagaagataatgtgagtatgaaagataaagttgtacaaaaatgattgtacaaacatcatttctct 14021230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 35008101 - 35008160
Alignment:
Q  15 aagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    ||||||||| |||||| ||| | ||||||||||||||   |||||||||||||||||||||||    
T  35008101 aagataatgtgagtatgagaaataaaattgtacaaaa---gttgtacaaatatcatttctcta 35008160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 305966 - 306029
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||  |||||| ||||| ||| || ||||||||| |||||| ||||||||||||||    
T  305966 aagaagataatatgagtatgagagaaaaagttatacaaaaatggttgtaaaaatatcatttctc 306029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 15141530 - 15141471
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||| |||||| ||||||||| ||||   ||||||| |||||||||||||||||||||    
T  15141530 ataatgtgagtatgagagagaaagttgtcataaaatagatgtacaaatatcatttctcta 15141471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 23141425 - 23141367
Alignment:
Q  14 gaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||| |||||| ||||||| | |||||||||||   ||||||||||||||||||||    
T  23141425 gaagataatgtgagtatgagagagacagttgtacaaaaa---ttgtacaaatatcatttctc 23141367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 23553215 - 23553157
Alignment:
Q  14 gaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||| |||||| ||||||| | |||||||||||   ||||||||||||||||||||    
T  23553215 gaagataatgtgagtatgagagagacagttgtacaaaaa---ttgtacaaatatcatttctc 23553157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 42607540 - 42607591
Alignment:
Q  25 gagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||| ||||||||||||||   |||||| |||||||||||||||||||||    
T  42607540 gagtatgagagagaaaattgtcacaaaataattgtacaaatatcatttctct 42607591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 4138188 - 4138246
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||| |||||| ||||||||| ||||   ||||||||| ||||||||||||||||||    
T  4138188 ataatgtgagtatgagagagaaagttgttagaaaatagttatacaaatatcatttctct 4138246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 12208475 - 12208441
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| ||||||||||||||||||||||    
T  12208475 ttgtacaaaaatggttgtacaaatatcatttctct 12208441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 18531638 - 18531600
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  18531638 aaaattgtcaaaaaatagttgtacaaatatcatttctct 18531600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 30340026 - 30339992
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| ||||||||||||||||||||||    
T  30340026 ttgtacaaaaatggttgtacaaatatcatttctct 30339992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 40700264 - 40700206
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||| |||||| ||||||||| ||||   |||||||||||||||||| |||||||||    
T  40700264 ataatgtgagtatgagagagaaagttgttataaaatagttgtacaaataccatttctct 40700206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 44897664 - 44897626
Alignment:
Q  37 gaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  44897664 gaaagttgtacaaaaatggttgtacaaatatcatttctc 44897626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 5852507 - 5852474
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||| |||||||||||||||||||||    
T  5852507 ttgtacaaaaatggttgtacaaatatcatttctc 5852474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 10711792 - 10711735
Alignment:
Q  19 taatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||| |||||| ||||||||||||||   ||||||| ||| ||||||||||||||||    
T  10711792 taatgtgagtatgagagagaaaattgtcacaaaatagatgttcaaatatcatttctct 10711735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 18749397 - 18749434
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  18749397 aaaattatacaaaaatggttgtacaaatatcatttctc 18749434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 27329121 - 27329170
Alignment:
Q  27 gtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||| ||||||||| |||||| |||||  |||||||||||||||||||||    
T  27329121 gtatgagagagaaagttgtaccaaaatgattgtacaaatatcatttctct 27329170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 77
Target Start/End: Complemental strand, 28494886 - 28494857
Alignment:
Q  48 aaaaatagttgtacaaatatcatttctcta 77  Q
    ||||||||||||||||||||||||||||||    
T  28494886 aaaaatagttgtacaaatatcatttctcta 28494857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 35705950 - 35705987
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  35705950 aaaattatacaaaaatggttgtacaaatatcatttctc 35705987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 38021393 - 38021356
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  38021393 aaaattatactaaaatagttgtacaaatatcatttctc 38021356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 305000 - 305044
Alignment:
Q  32 agagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||||||| |||||| ||||| ||||||||||||| ||||||||    
T  305000 agagagaaagttgtaccaaaatggttgtacaaatataatttctct 305044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 4263861 - 4263924
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||| |||||| |||||| | ||||||| ||||  |||||| ||||||||||||||||||||||    
T  4263861 aagaatataatgtgagtatgaaagagaaagttgtcaaaaaat-gttgtacaaatatcatttctct 4263924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 4319795 - 4319767
Alignment:
Q  49 aaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||||||||||||||||||||||    
T  4319795 aaaatagttgtacaaatatcatttctcta 4319767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 76
Target Start/End: Complemental strand, 8352862 - 8352834
Alignment:
Q  48 aaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||||||||||||||||||||    
T  8352862 aaaaatagttgtacaaatatcatttctct 8352834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 10288176 - 10288148
Alignment:
Q  49 aaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||||||||||||||||||||||    
T  10288176 aaaatagttgtacaaatatcatttctcta 10288148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 14891123 - 14891151
Alignment:
Q  49 aaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||||||||||||||||||||||    
T  14891123 aaaatagttgtacaaatatcatttctcta 14891151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 17159603 - 17159567
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttct 74  Q
    ||||||||  |||||||||||||||||||||||||||    
T  17159603 aaaattgttaaaaaatagttgtacaaatatcatttct 17159567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 23045119 - 23045091
Alignment:
Q  49 aaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||||||||||||||||||||||    
T  23045119 aaaatagttgtacaaatatcatttctcta 23045091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 26387892 - 26387932
Alignment:
Q  37 gaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||| |||||||| ||| |||||||||||||||||||||||    
T  26387892 gaaagttgtacaagaatggttgtacaaatatcatttctcta 26387932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 36383481 - 36383449
Alignment:
Q  56 ttgtacaaatatcatttctctagcaataatgag 88  Q
    |||||||||||||||||||||| ||||||||||    
T  36383481 ttgtacaaatatcatttctctaacaataatgag 36383449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 14233641 - 14233705
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||    
T  14233641 aagaagataatgcgagtatgagagagaaagttgtaaaaaaatagttgtacaaatatcatttctct 14233705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 41776248 - 41776186
Alignment:
Q  13 agaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||||| ||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  41776248 agaagatgatgtgagtatgagagagaaagttgtacaaaaatagttgtacaaatatcatttctc 41776186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 13924085 - 13924021
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| ||| || ||||||||| |||||||||||| ||||||||||||||||||||||    
T  13924085 aagaagataatgtgagcatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctct 13924021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 6243108 - 6243045
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||| |||||| ||||||||| ||||||||||||  ||||||||||||||||||||    
T  6243108 aagaagataatgtgagtatgagagagaaagttgtacaaaaatgattgtacaaatatcatttctc 6243045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 38939192 - 38939250
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||| |||||| ||||||||| ||||||||||||||||||| |||||||||||||||    
T  38939192 ataatgtgagtatgagagagaaagttgtacaaaaatagttgtagaaatatcatttctct 38939250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 25430720 - 25430656
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| |||||| ||| ||||  |||||||||||| ||||||||||||||||||||||    
T  25430720 aagaagataatgtgagtatgagatagaaggttgtacaaaaatggttgtacaaatatcatttctct 25430656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 23265351 - 23265414
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||| |||||| ||||| ||| ||||| |||||||||| |||||||||||||||||    
T  23265351 aagaagataatgtgagtatgagagaaaaagttgtataaaaatagttatacaaatatcatttctc 23265414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 32777959 - 32777896
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||| |||||| ||||||||| ||||| |||||| |||||||| ||||||||||||    
T  32777959 aagaagataatgtgagtataagagagaaagttgtataaaaatggttgtacagatatcatttctc 32777896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 37471717 - 37471654
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||| |||||  ||||||||| ||||||||||||  ||||||||||||||||||||    
T  37471717 aagaagataatgtgagtacgagagagaaagttgtacaaaaatgattgtacaaatatcatttctc 37471654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 37392125 - 37392189
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||| |||||| |||||| ||||||||| ||||  |||||| ||||||||||||||||||||||    
T  37392125 aagaatataatgtgagtatgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctct 37392189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 42768119 - 42768179
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcattt 72  Q
    |||| ||||||| |||||| ||||||||||||||  |||| ||||||||||||||||||||    
T  42768119 aagaggataatgtgagtatgagagagaaaattgtcaaaaagtagttgtacaaatatcattt 42768179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 43590768 - 43590704
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| |||||| ||||||||| || |||||||||  || ||||||||||||||||||    
T  43590768 aagaagataatgtgagtatgagagagaaagttatacaaaaatgattatacaaatatcatttctct 43590704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 36675386 - 36675336
Alignment:
Q  25 gagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||| ||||| ||| |||||||||||| |||||||||||||||||||||    
T  36675386 gagtatgagagaaaaagttgtacaaaaatggttgtacaaatatcatttctc 36675336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 8233493 - 8233554
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttc 73  Q
    |||||||||||  |||||| |||||||||  |||||||||||  ||||||||||||||||||    
T  8233493 aagaagataataggagtatgagagagaaagatgtacaaaaatgattgtacaaatatcatttc 8233554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 7010735 - 7010683
Alignment:
Q  25 gagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||| ||||||||||||||  ||||||  ||||||||||||||||||||||    
T  7010735 gagtatgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 7010683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 32020468 - 32020524
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttct 74  Q
    ||||||||||||| ||||||||| || |  |||||| ||||||||||||||||||||    
T  32020468 ataatgcgagtatgagagagaaagttatcaaaaaatggttgtacaaatatcatttct 32020524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 38174230 - 38174294
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaa-atagttgtacaaatatcatttctc 75  Q
    ||||| |||||| |||||| ||||||||| ||||  |||| ||||||||||||||||||||||||    
T  38174230 aagaatataatgtgagtatgagagagaaagttgtctaaaagatagttgtacaaatatcatttctc 38174294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 34578415 - 34578450
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||||| |||||||||||||||||||||||    
T  34578415 ttgtacaaaaatggttgtacaaatatcatttctcta 34578450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 35345984 - 35346023
Alignment:
Q  36 agaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||||||||||||||||| ||| ||||||||||||||||    
T  35345984 agaaaattgtacaaaaataattggacaaatatcatttctc 35346023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 45081461 - 45081398
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||| |||||| |||||| ||||| ||||||||  |||| | |||||||||||||||||||||    
T  45081461 aagaacataatgtgagtatgagagacaaaattgttaaaaattggttgtacaaatatcatttctc 45081398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 45405822 - 45405881
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||| |||||| ||||| ||| |||||  ||||| |||||||||||||||||||||||    
T  45405822 ataatgtgagtatgagagaaaaagttgtatcaaaatggttgtacaaatatcatttctcta 45405881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 75
Target Start/End: Complemental strand, 1646286 - 1646256
Alignment:
Q  45 tacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||||||||||||||||||||||    
T  1646286 tacaaaaatagttgtacaaatatcatttctc 1646256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 3893432 - 3893466
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcattt 72  Q
    |||||||||| ||||||||||||||||||||||||    
T  3893432 aaaattgtaccaaaatagttgtacaaatatcattt 3893466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 22203253 - 22203287
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| ||||||||||||||||||||||    
T  22203253 ttgtacaaaaatggttgtacaaatatcatttctct 22203287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 28156240 - 28156202
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  28156240 aaaattgtaccaaaatggttgtacaaatatcatttctct 28156202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 35701865 - 35701899
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| ||||||||||||||||||||||    
T  35701865 ttgtacaaaaatggttgtacaaatatcatttctct 35701899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 37294668 - 37294605
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||||| |||||| ||||||||  |||||||||| |  || |||||||||||||||||||    
T  37294668 aagaagataatgtgagtatgagagagaaggttgtacaaaagt--ttttacaaatatcatttctcta 37294605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 43419928 - 43419878
Alignment:
Q  26 agtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||| ||||||||||||||   ||| ||||||||||||||||||||||||    
T  43419928 agtataagagagaaaattgtcacaaattagttgtacaaatatcatttctct 43419878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 9963760 - 9963695
Alignment:
Q  12 aagaagataatgcgagtatta-gagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||| ||||||| |||||| | |||||||||||||  ||||||  |||||||||||||||||||||    
T  9963760 aagaggataatgtgagtatgatgagagaaaattgtcaaaaaattattgtacaaatatcatttctct 9963695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 21649206 - 21649239
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||| |||||||||||||||||||||    
T  21649206 ttgtacaaaaatggttgtacaaatatcatttctc 21649239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 27300379 - 27300346
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||| |||||||||||||||||||||    
T  27300379 ttgtacaaaaatggttgtacaaatatcatttctc 27300346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 39884492 - 39884549
Alignment:
Q  19 taatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||| |||||| ||||| || ||||||  |||||| |||||||||||||||||||||    
T  39884492 taatgtgagtatgagagataatattgtaataaaataattgtacaaatatcatttctct 39884549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 23709006 - 23708974
Alignment:
Q  45 tacaaaaatagttgtacaaatatcatttctcta 77  Q
    ||||||||| |||||||||||||||||||||||    
T  23709006 tacaaaaatggttgtacaaatatcatttctcta 23708974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 35368685 - 35368621
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  35368685 aagaagataatgtgagtatgagagagaaagttgtacaaaaatagttgtacaaatatcatttctct 35368621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 29057722 - 29057659
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||| |||||| ||||||||| |||||||||||| |||||||||||||||||||||    
T  29057722 aagaagataatgtgagtatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctc 29057659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 29846888 - 29846952
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||| |||||| |||||| ||||||||| |||||||||||| ||||||||||||||||||||||    
T  29846888 aagaatataatgtgagtatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctct 29846952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 50745623 - 50745559
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| |||||| ||||||||| ||||||||||||  |||||||||||||||||||||    
T  50745623 aagaagataatgtgagtatgagagagaaagttgtacaaaaatgattgtacaaatatcatttctct 50745559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 43149340 - 43149403
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||| |||||| ||| ||||| ||||||||||||||||||||||||| ||||||||    
T  43149340 aagaagataatgtgagtatgagaaagaaagttgtacaaaaatagttgtacaaataacatttctc 43149403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 48490513 - 48490575
Alignment:
Q  15 aagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    ||||||||| |||||| ||||||||| |||||||||| | |||||||||||||||||||||||    
T  48490513 aagataatgtgagtatgagagagaaagttgtacaaaagtggttgtacaaatatcatttctcta 48490575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 49361832 - 49361896
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| |||||| ||||| ||| ||||||||||||  |||||||||||||||||||||    
T  49361832 aagaagataatgtgagtatgagagaaaaagttgtacaaaaatgattgtacaaatatcatttctct 49361896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 47484351 - 47484290
Alignment:
Q  15 aagataatgcgagtattagagagaaaattgtaca-aaaatagttgtacaaatatcatttctc 75  Q
    ||||||||| |||||| ||||| ||||||||||| ||||| |||||||||||||||||||||    
T  47484351 aagataatgtgagtatgagagaaaaaattgtacaaaaaatggttgtacaaatatcatttctc 47484290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 48117407 - 48117346
Alignment:
Q  15 aagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||||||| |||||| | ||||||| |||||||||||| |||||| |||||||||||||||    
T  48117407 aagataatgtgagtatgaaagagaaagttgtacaaaaatggttgtataaatatcatttctct 48117346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 43220138 - 43220202
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| |||||| ||||||||| || ||||||||| |||||| |||||||| ||||||    
T  43220138 aagaagataatgtgagtatgagagagaaagttttacaaaaatggttgtaaaaatatcaattctct 43220202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 9159070 - 9159108
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  9159070 aaaattgtacaaaaatggttgtacaaatatcatttctct 9159108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 21481838 - 21481777
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| |||||| ||||| ||| |||||||||   |||||||||||||||||||||||    
T  21481838 aagaagataatgtgagtatgagagaaaaagttgtacaaa---agttgtacaaatatcatttctct 21481777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 26548777 - 26548834
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||| |||||| ||||||||| |||||| ||||||||||| ||||||| |||||||    
T  26548777 ataatgtgagtatgagagagaaagttgtaccaaaatagttgtccaaatattatttctc 26548834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 38957522 - 38957573
Alignment:
Q  25 gagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||| ||||| ||| |||| |||||||||||||||||||||||||||||||    
T  38957522 gagtatgagagaaaaagttgt-caaaaatagttgtacaaatatcatttctcta 38957573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 53021224 - 53021188
Alignment:
Q  40 aattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||| |||||||||||||||||||||||||||||||    
T  53021224 aattgcacaaaaatagttgtacaaatatcatttctct 53021188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 3484833 - 3484770
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||| |||||| |||||| ||||||||| |||||  ||||| |||| ||||||||||||||||    
T  3484833 aagaatataatgtgagtatgagagagaaagttgtaataaaatggttggacaaatatcatttctc 3484770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 7351672 - 7351711
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||| ||||||||| |||||||||||||||||||||||    
T  7351672 aaaattatacaaaaatggttgtacaaatatcatttctcta 7351711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 34145572 - 34145611
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||| ||| |||||||||||||||||||||||||||||    
T  34145572 aaaattatactaaaatagttgtacaaatatcatttctcta 34145611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 46953006 - 46952948
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||| |||||| ||||||||| || |  |||||| ||||||||||||||||||||||    
T  46953006 ataatgtgagtatgagagagaaagttatcaaaaaatggttgtacaaatatcatttctct 46952948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 48205116 - 48205078
Alignment:
Q  15 aagataatgcgagtattagagagaaaattgtacaaaaat 53  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  48205116 aagataatgtgagtatgagagagaaaattgtacaaaaat 48205078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 50318383 - 50318444
Alignment:
Q  15 aagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||||||||| ||||||||| || || |||||||||||| ||||| |||||| ||||    
T  50318383 aagataatgcgagtatgagagagaaagttata-aaaaatagttgttcaaatgtcatttttcta 50318444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 54007530 - 54007473
Alignment:
Q  20 aatgcgagtattagagagaaaattg-tacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||| |||||| ||||||||||||| ||||||| |||||||| ||||||||||||||||    
T  54007530 aatgtgagtatgagagagaaaattgctacaaaa-tagttgtagaaatatcatttctcta 54007473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 55361236 - 55361294
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||| |||||| ||||||||| ||||  | |||| ||||||||||||||||||||||    
T  55361236 ataatgtgagtataagagagaaagttgtcaagaaatggttgtacaaatatcatttctct 55361294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 7351635 - 7351676
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaat 53  Q
    |||||||||||  |||||| ||||||||||||||||||||||    
T  7351635 aagaagataatatgagtatgagagagaaaattgtacaaaaat 7351676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 9159033 - 9159074
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaat 53  Q
    |||||||||||| |||||| | ||||||||||||||||||||    
T  9159033 aagaagataatgtgagtatgaaagagaaaattgtacaaaaat 9159074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 9719455 - 9719512
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||| |||||| |||| |||||||||  |||| | |||||||||||||||||||||    
T  9719455 ataatgtgagtatgagagggaaaattgtcaaaaagtggttgtacaaatatcatttctc 9719512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 14839083 - 14839116
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||| |||||||||||||||||||||    
T  14839083 ttgtacaaaaatggttgtacaaatatcatttctc 14839116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 23868981 - 23869038
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||| |||||| | ||||||||||||   ||||| |||||||||||||||||||||    
T  23868981 ataatgtgagtatgaaagagaaaattgttataaaatggttgtacaaatatcatttctc 23869038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 45205337 - 45205288
Alignment:
Q  26 agtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||| ||||| ||||||||   |||||||||||||||||||||||||||    
T  45205337 agtatgagagaaaaaattgtcacaaaatagttgtacaaatatcatttctc 45205288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 47683856 - 47683799
Alignment:
Q  20 aatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||| |||||| ||||||||| ||||   ||||| |||||||||||||||||||||||    
T  47683856 aatgtgagtatgagagagaaagttgtcacaaaatggttgtacaaatatcatttctcta 47683799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 75
Target Start/End: Original strand, 6178468 - 6178496
Alignment:
Q  47 caaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||||||||||||||||||||    
T  6178468 caaaaatagttgtacaaatatcatttctc 6178496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 76
Target Start/End: Complemental strand, 36799425 - 36799397
Alignment:
Q  48 aaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||||||||||||||||||||    
T  36799425 aaaaatagttgtacaaatatcatttctct 36799397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 43883354 - 43883314
Alignment:
Q  34 agagaaaattgtacaaaaatagttgtacaaatatcatttct 74  Q
    ||||||||||||  |||||| ||||||||||||||||||||    
T  43883354 agagaaaattgtcaaaaaatggttgtacaaatatcatttct 43883314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 44689825 - 44689793
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttct 74  Q
    |||||||||||| ||||||||||||||||||||    
T  44689825 ttgtacaaaaatggttgtacaaatatcatttct 44689793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 44937282 - 44937218
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||| |||| || |||||| | ||||||| ||||  |||||| ||||||||||||||||||||||    
T  44937282 aagaggatattgtgagtataaaagagaaagttgtcaaaaaattgttgtacaaatatcatttctct 44937218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 76
Target Start/End: Original strand, 45528986 - 45529014
Alignment:
Q  48 aaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||||||||||||||||||||    
T  45528986 aaaaatagttgtacaaatatcatttctct 45529014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 76
Target Start/End: Original strand, 50559256 - 50559284
Alignment:
Q  48 aaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||||||||||||||||||||    
T  50559256 aaaaatagttgtacaaatatcatttctct 50559284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 50876372 - 50876424
Alignment:
Q  25 gagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||| | ||||||| ||||  |||||| |||||||||||||||||||||||    
T  50876372 gagtatgatagagaaagttgtcaaaaaattgttgtacaaatatcatttctcta 50876424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 33465036 - 33465099
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  33465036 aagaagataatgtgagtatgagagagaaaattgtacaaaaatggttgtacaaatatcatttctc 33465099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 49142514 - 49142579
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||||| |||||| |||||||||||| ||||||||| |||||||||||||||||||||||    
T  49142514 aagaagataatgtgagtatgagagagaaaattttacaaaaatggttgtacaaatatcatttctcta 49142579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 25272665 - 25272602
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||| ||||||  |||||||| |||||||||||| |||||||||||||||||||||    
T  25272665 aagaagataatgtgagtatatgagagaaagttgtacaaaaatggttgtacaaatatcatttctc 25272602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 27866534 - 27866597
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||| |||||| ||||| ||| |||||||||||| |||||||||||||||||||||    
T  27866534 aagaagataatgtgagtatgagagataaagttgtacaaaaatggttgtacaaatatcatttctc 27866597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 24380718 - 24380783
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||||| |||||| ||| ||||| ||||| |||||| |||||||||||||||||||||||    
T  24380718 aagaagataatgtgagtatgagaaagaaagttgtataaaaatggttgtacaaatatcatttctcta 24380783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 40108198 - 40108134
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| |||||| ||||||||| ||||| |||||| |||||||||| |||||||||||    
T  40108198 aagaagataatgtgagtatgagagagaaagttgtataaaaatggttgtacaaacatcatttctct 40108134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 21590003 - 21589932
Alignment:
Q  5 gagagagaagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||||||| ||||||||| |||||| | ||| ||| ||||||||||||| ||||||| |||||||||||||    
T  21590003 gagagagaataagataatgtgagtatgaaagaaaaagttgtacaaaaataattgtacagatatcatttctct 21589932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 43942708 - 43942648
Alignment:
Q  15 aagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||||||| |||||| ||||||||| ||||| |||||||||||| ||||||||||||||||    
T  43942708 aagataatgtgagtatgagagagaaagttgta-aaaaatagttgttcaaatatcatttctct 43942648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 37848617 - 37848680
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||   ||||| ||||||||| ||||||||||||  ||||||||||||||||||||    
T  37848617 aagaagataatattagtatgagagagaaagttgtacaaaaatgattgtacaaatatcatttctc 37848680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 27704468 - 27704434
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||||||||||||||||||||||||||    
T  27704468 ttgtacaaaaatagttgtacaaatatcatttctct 27704434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 38547287 - 38547349
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttct 74  Q
    ||||| |||||| |||||| ||| ||||| ||||  |||||||||||||||||||||||||||    
T  38547287 aagaatataatgtgagtatgagaaagaaagttgtcaaaaaatagttgtacaaatatcatttct 38547349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 41538519 - 41538481
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  41538519 aaaattgtacaaaaatggttgtacaaatatcatttctct 41538481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 29923742 - 29923685
Alignment:
Q  15 aagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcattt 72  Q
    ||||||||| |||||| ||||||||| ||||||||||||  |||||||||| ||||||    
T  29923742 aagataatgtgagtatgagagagaaagttgtacaaaaatgattgtacaaatgtcattt 29923685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 40207838 - 40207871
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||||||||||||||||||||||||||||||||    
T  40207838 ttgtacaaaaatagttgtacaaatatcatttctc 40207871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 6822530 - 6822594
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| |||||| ||||| ||| ||||   ||||| ||||||||||||||||||||||    
T  6822530 aagaagataatgtgagtatgagagaaaaagttgttagaaaatggttgtacaaatatcatttctct 6822594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 17039194 - 17039158
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttct 74  Q
    |||||| ||||||||||||||||||||||||||||||    
T  17039194 aaaattatacaaaaatagttgtacaaatatcatttct 17039158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 23034347 - 23034383
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttct 74  Q
    |||||||||||||||| ||||||||||||||||||||    
T  23034347 aaaattgtacaaaaatggttgtacaaatatcatttct 23034383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 30391222 - 30391158
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||| |||||| |||||| ||||| ||| |||||  ||||||||| ||||||||||||||||||    
T  30391222 aagaatataatgtgagtataagagaaaaagttgtaataaaatagttatacaaatatcatttctct 30391158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 45420062 - 45420122
Alignment:
Q  17 gataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    ||||||| || ||| ||||||||| ||||  |||||||||||| |||||||||||||||||    
T  45420062 gataatgtgaatatgagagagaaagttgtcaaaaaatagttgttcaaatatcatttctcta 45420122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 640429 - 640395
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcattt 72  Q
    |||||||||||||||| ||||||||||||||||||    
T  640429 aaaattgtacaaaaatggttgtacaaatatcattt 640395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 28548259 - 28548293
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||| ||||||||||||||||||||||||||||    
T  28548259 ttgtaccaaaatagttgtacaaatatcatttctct 28548293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 43213376 - 43213318
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||| |||||| ||||||||||||||   ||| | ||||||||||||||||||||||    
T  43213376 ataatgtgagtatgagagagaaaattgttagaaagtggttgtacaaatatcatttctct 43213318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 77
Target Start/End: Original strand, 45154582 - 45154612
Alignment:
Q  47 caaaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||||||||||||||||||||||||    
T  45154582 caaaaatagttgtacaaatatcatttctcta 45154612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 48522189 - 48522155
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| ||||||||||||||||||||||    
T  48522189 ttgtacaaaaatggttgtacaaatatcatttctct 48522155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 48639421 - 48639455
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| ||||||||||||||||||||||    
T  48639421 ttgtacaaaaatggttgtacaaatatcatttctct 48639455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 1709358 - 1709317
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaat 53  Q
    |||||||||||| |||||| |||||||| |||||||||||||    
T  1709358 aagaagataatgtgagtatgagagagaatattgtacaaaaat 1709317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 3937121 - 3937182
Alignment:
Q  15 aagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||||||| |||||| ||||||||| ||||   ||||||| ||| ||||||||||||||||    
T  3937121 aagataatgtgagtatgagagagaaagttgtcacaaaatagatgttcaaatatcatttctct 3937182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 5905969 - 5906026
Alignment:
Q  19 taatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||| |||||| ||||||||| || ||| |||||  |||||||||||||||||||||    
T  5905969 taatgtgagtatgagagagaaagttataccaaaatgattgtacaaatatcatttctct 5906026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 7295487 - 7295450
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  7295487 aaaattgtactaaaatggttgtacaaatatcatttctc 7295450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 17039231 - 17039190
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaat 53  Q
    |||||||||||| |||||| ||||||||| ||||||||||||    
T  17039231 aagaagataatgtgagtatgagagagaaagttgtacaaaaat 17039190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 23389632 - 23389665
Alignment:
Q  43 tgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||| |||||||||||||||||||||||||||||    
T  23389632 tgtaaaaaaatagttgtacaaatatcatttctct 23389665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 77
Target Start/End: Original strand, 40693572 - 40693601
Alignment:
Q  48 aaaaatagttgtacaaatatcatttctcta 77  Q
    ||||||||||||||||||||||||||||||    
T  40693572 aaaaatagttgtacaaatatcatttctcta 40693601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 42598242 - 42598279
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  42598242 aaaattgttaaaaaatagttgtacaaatatcatttctc 42598279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 27570405 - 27570353
Alignment:
Q  25 gagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||| ||||||||| || |  |||||||||||| |||||||||||||||||    
T  27570405 gagtatgagagagaaagttattaaaaaatagttgttcaaatatcatttctcta 27570353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 34349065 - 34349097
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttct 74  Q
    |||||||||||| ||||||||||||||||||||    
T  34349065 ttgtacaaaaatggttgtacaaatatcatttct 34349097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 44564757 - 44564792
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttct 74  Q
    |||||||| ||||||||||||||||||||||||||||    
T  44564757 aaaattgt-caaaaatagttgtacaaatatcatttct 44564792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 17112 - 17048
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||||||||||||||||| ||||| ||| |||||||||||| ||||||||||||||||||||||    
T  17112 aagaagataatgcgagtatgagagataaagttgtacaaaaatggttgtacaaatatcatttctct 17048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 2165297 - 2165361
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||||||||||||||||| ||||| ||| |||||||||||| ||||||||||||||||||||||    
T  2165297 aagaagataatgcgagtatgagagataaagttgtacaaaaatggttgtacaaatatcatttctct 2165361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 2176930 - 2176994
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||||||||||||||||| ||||| ||| |||||||||||| ||||||||||||||||||||||    
T  2176930 aagaagataatgcgagtatgagagataaagttgtacaaaaatggttgtacaaatatcatttctct 2176994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 9395334 - 9395397
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||| |||||| | ||||||| ||||||||||||||||||||||||||||||||||    
T  9395334 aagaagataatgtgagtatgaaagagaaagttgtacaaaaatagttgtacaaatatcatttctc 9395397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 17442896 - 17442832
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| |||||| ||||||||| |||||||||||| ||||||||||||| ||||||||    
T  17442896 aagaagataatgtgagtataagagagaaagttgtacaaaaatggttgtacaaatattatttctct 17442832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 25567487 - 25567551
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| |||||| ||||| ||| |||||||||||| ||||||| ||||||||||||||    
T  25567487 aagaagataatgtgagtatgagagataaagttgtacaaaaatggttgtacgaatatcatttctct 25567551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 16121226 - 16121163
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||||||||||  ||||| | ||||||| |||||||||||| |||||||||||||||||||||    
T  16121226 aagaagataatgtaagtatgaaagagaaagttgtacaaaaatggttgtacaaatatcatttctc 16121163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 32135428 - 32135491
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||| |||||| | ||||||| ||||||||||||  ||||||||||||||||||||    
T  32135428 aagaagataatgtgagtatgatagagaaagttgtacaaaaatgattgtacaaatatcatttctc 32135491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 32644680 - 32644623
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||| |||||| ||||||||| ||||  ||||||||||||||||||||||||||||    
T  32644680 ataatgtgagtatgagagagaaagttgtcaaaaaatagttgtacaaatatcatttctc 32644623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 22422224 - 22422164
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||| |||||| ||||||||| |||||||||   ||||||||||||| ||||||||    
T  22422224 aagaagataatgtgagtatgagagagaaagttgtacaaa---agttgtacaaataacatttctc 22422164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 25561937 - 25562001
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| |||||| ||||| ||| ||||| ||||||  |||||| ||||||||||||||    
T  25561937 aagaagataatgtgagtatgagagataaagttgtataaaaatgattgtacgaatatcatttctct 25562001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 26101451 - 26101515
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| |||||| ||||| ||| ||||| ||||||  |||||| ||||||||||||||    
T  26101451 aagaagataatgtgagtatgagagataaagttgtataaaaatgattgtacgaatatcatttctct 26101515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 1196115 - 1196057
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||| |||||||||||||||| ||||  |||| |  |||||||||||||||||||||    
T  1196115 ataatgtgagtattagagagaaagttgtcaaaaagtgattgtacaaatatcatttctct 1196057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 16865627 - 16865565
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttct 74  Q
    |||||||||||| ||| || ||| ||||| |||||||||| |  |||||||||||||||||||    
T  16865627 aagaagataatgtgagcataagatagaaagttgtacaaaagtgattgtacaaatatcatttct 16865565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 31413585 - 31413539
Alignment:
Q  26 agtattagagagaaaattgtacaaaaatagttgtacaaatatcattt 72  Q
    ||||||||||||||||||||   |||||| |||||||||||||||||    
T  31413585 agtattagagagaaaattgtcacaaaataattgtacaaatatcattt 31413539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 6997584 - 6997621
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  6997584 aaaattatacaaaaatggttgtacaaatatcatttctc 6997621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 77
Target Start/End: Complemental strand, 20712094 - 20712065
Alignment:
Q  48 aaaaatagttgtacaaatatcatttctcta 77  Q
    ||||||||||||||||||||||||||||||    
T  20712094 aaaaatagttgtacaaatatcatttctcta 20712065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 27790273 - 27790306
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||| |||||||||||||||||||||    
T  27790273 ttgtacaaaaatggttgtacaaatatcatttctc 27790306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 30622061 - 30622021
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctctag 78  Q
    |||||||||  ||| ||||||||||||||||||||||||||    
T  30622061 aaaattgtaataaagtagttgtacaaatatcatttctctag 30622021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 12203221 - 12203157
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| ||| || ||||||||| |||||||||||| ||||||||||||||||||||||    
T  12203221 aagaagataatgtgagcatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctct 12203157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 43153060 - 43153122
Alignment:
Q  15 aagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    ||||||||| || ||| ||||||||| |||||||||||| |||||||||||||||||||||||    
T  43153060 aagataatgtgaatatgagagagaaagttgtacaaaaattgttgtacaaatatcatttctcta 43153122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 38919924 - 38919862
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||| |||||| ||||||  |||||||| |||||||||||||||||||||||||||||||||||    
T  38919924 aagaaaataatgtgagtat--gagagaaagttgtacaaaaatagttgtacaaatatcatttctct 38919862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 40201117 - 40201182
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||||| || ||| |||||||| ||||||||||||| |||||| ||||||||||||||||    
T  40201117 aagaagataatgtgactatgagagagaatattgtacaaaaatggttgtataaatatcatttctcta 40201182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 8442230 - 8442170
Alignment:
Q  15 aagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||||||| || ||| ||||||||| ||||||||||||| ||||||||||||||||||||    
T  8442230 aagataatgtgaatatgagagagaaagttgtacaaaaataattgtacaaatatcatttctc 8442170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 9957199 - 9957262
Alignment:
Q  13 agaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||||||||| |||||| ||| ||||| || |||||||||| |||||||||||||||||||||    
T  9957199 agaagataatgtgagtatgagaaagaaagttctacaaaaataattgtacaaatatcatttctct 9957262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 7080604 - 7080546
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcat 70  Q
    |||||||||||| |||||| ||||||||| ||||||||||||  |||||||||||||||    
T  7080604 aagaagataatgtgagtatgagagagaaagttgtacaaaaatgattgtacaaatatcat 7080546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 11878503 - 11878439
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||| |||||| |||||| ||| |||||||| || ||||||| |||||||||||||||||||||    
T  11878503 aagaaaataatgtgagtatgagatagaaaattatataaaaataattgtacaaatatcatttctct 11878439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 14206463 - 14206399
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||| ||||||| |||||| ||||||||| ||||  |||||| ||||||||||||||||||||||    
T  14206463 aagaggataatgtgagtatgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctct 14206399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 38387653 - 38387610
Alignment:
Q  32 agagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||||||| |||||||||||| |||||||||||||||||||||    
T  38387653 agagagaaagttgtacaaaaatggttgtacaaatatcatttctc 38387610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 4434539 - 4434481
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||| |||||| ||||| ||||||||  |||||| ||||||||||||||||||||||    
T  4434539 ataatgtgagtatgagagaaaaaattgtcaaaaaatggttgtacaaatatcatttctct 4434481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 32732123 - 32732179
Alignment:
Q  20 aatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||| |||||| ||||||||| ||||||||||||  |||||||||||| ||||||||    
T  32732123 aatgtgagtatgagagagaaagttgtacaaaaatgattgtacaaatataatttctct 32732179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 25585494 - 25585529
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||||| |||||||||||||||||||||||    
T  25585494 ttgtacaaaaatggttgtacaaatatcatttctcta 25585529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 41192624 - 41192585
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  41192624 aaaattgtagcaaaatagttgtacaaatatcatttctcta 41192585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 3031867 - 3031833
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| ||||||||||||||||||||||    
T  3031867 ttgtacaaaaatggttgtacaaatatcatttctct 3031833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 5996704 - 5996666
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  5996704 aaaattgttaaaaaatagttgtacaaatatcatttctct 5996666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 14523002 - 14523036
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| ||||||||||||||||||||||    
T  14523002 ttgtacaaaaatggttgtacaaatatcatttctct 14523036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 18729327 - 18729361
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| ||||||||||||||||||||||    
T  18729327 ttgtacaaaaatggttgtacaaatatcatttctct 18729361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 20985563 - 20985601
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  20985563 aaaattatacaaaaatggttgtacaaatatcatttctct 20985601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 33910085 - 33910147
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttct 74  Q
    ||||| |||||| |||||| ||||||||| ||||  |||||| |||| |||||||||||||||    
T  33910085 aagaatataatgtgagtatgagagagaaagttgtcaaaaaatggttgaacaaatatcatttct 33910147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 39032642 - 39032676
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| ||||||||||||||||||||||    
T  39032642 ttgtacaaaaatggttgtacaaatatcatttctct 39032676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 8725419 - 8725484
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    ||||| |||||| |||||| ||||||||| |||||  ||| | ||||||||||||| |||||||||    
T  8725419 aagaatataatgtgagtatgagagagaaagttgtaataaagtggttgtacaaatataatttctcta 8725484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 20985526 - 20985567
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaat 53  Q
    |||||||||||| |||||| ||||||||| ||||||||||||    
T  20985526 aagaagataatgtgagtatgagagagaaagttgtacaaaaat 20985567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 22653729 - 22653688
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaat 53  Q
    |||||||||||| |||||| ||||||||| ||||||||||||    
T  22653729 aagaagataatgtgagtatgagagagaaagttgtacaaaaat 22653688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 24486944 - 24486895
Alignment:
Q  27 gtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||| ||| ||||||||||||||||||  |||| ||||||||||||||||    
T  24486944 gtatgagaaagaaaattgtacaaaaattattgttcaaatatcatttctct 24486895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 31748369 - 31748336
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||| ||||||||||||||||||||||||||||    
T  31748369 ttgtaaaaaaatagttgtacaaatatcatttctc 31748336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 34693213 - 34693254
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaat 53  Q
    |||||||||||| |||||| |||||||| |||||||||||||    
T  34693213 aagaagataatgtgagtatgagagagaagattgtacaaaaat 34693254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 39458731 - 39458666
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||| ||||||| |||||| ||||||||| ||||  |||| | |||||||| ||||||||||||||    
T  39458731 aagaggataatgtgagtatgagagagaaagttgtcaaaaactggttgtacagatatcatttctcta 39458666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 13734357 - 13734421
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||| |||||| |||||| ||||||||| ||||   ||| | ||||||||||||||||||||||    
T  13734357 aagaatataatgtgagtatgagagagaaagttgtcataaagtggttgtacaaatatcatttctct 13734421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 76
Target Start/End: Original strand, 19844353 - 19844381
Alignment:
Q  48 aaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||||||||||||||||||||    
T  19844353 aaaaatagttgtacaaatatcatttctct 19844381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 76
Target Start/End: Complemental strand, 29803252 - 29803224
Alignment:
Q  48 aaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||||||||||||||||||||    
T  29803252 aaaaatagttgtacaaatatcatttctct 29803224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 76
Target Start/End: Complemental strand, 34428187 - 34428159
Alignment:
Q  48 aaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||||||||||||||||||||    
T  34428187 aaaaatagttgtacaaatatcatttctct 34428159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 76
Target Start/End: Complemental strand, 35165706 - 35165678
Alignment:
Q  48 aaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||||||||||||||||||||    
T  35165706 aaaaatagttgtacaaatatcatttctct 35165678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 11121555 - 11121491
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| |||||| ||||||||| |||||||||| | ||||||||||||||||||||||    
T  11121555 aagaagataatgtgagtatgagagagaaagttgtacaaaagttgttgtacaaatatcatttctct 11121491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 30414938 - 30414874
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| |||||| ||||||||  |||||||||||| ||||||||||||||||||||||    
T  30414938 aagaagataatgtgagtatgagagagaaggttgtacaaaaatggttgtacaaatatcatttctct 30414874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 50460709 - 50460771
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttct 74  Q
    |||||||||||| |||||| ||| ||||| |||||||||||| ||||||||||||||||||||    
T  50460709 aagaagataatgtgagtatgagaaagaaagttgtacaaaaatggttgtacaaatatcatttct 50460771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 16252758 - 16252819
Alignment:
Q  14 gaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||| |||||| | ||||||| |||||||||||| |||||||||||||||||||||    
T  16252758 gaagataatgtgagtatgaaagagaaagttgtacaaaaatggttgtacaaatatcatttctc 16252819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 22674749 - 22674710
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22674749 aaaattgtacaaaaatagttgtacaaatatcatttctcta 22674710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 35030759 - 35030822
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||||||||||  ||||| ||||||||| |||||||||||| |||||||||||| ||||||||    
T  35030759 aagaagataatgtaagtatgagagagaaagttgtacaaaaatggttgtacaaataacatttctc 35030822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 48689628 - 48689570
Alignment:
Q  14 gaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||| |||||| |||||||||||| ||||||   ||||||||||||||||||||||    
T  48689628 gaagataatgtgagtatgagagagaaaattatacaaa---agttgtacaaatatcatttctc 48689570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 1100254 - 1100216
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  1100254 aaaattgtacaaaaatggttgtacaaatatcatttctct 1100216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 46903538 - 46903480
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||| |||||| ||||||||| |||||  ||||| ||||||||||||||||||||||    
T  46903538 ataatgtgagtatgagagagaaagttgtatcaaaatggttgtacaaatatcatttctct 46903480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 644758 - 644701
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||||||||| | ||||| ||||||||| |||||| ||||||||||||| |||||||    
T  644758 ataatgcgagtgtgagagaaaaaattgtataaaaatggttgtacaaatattatttctc 644701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 29094743 - 29094803
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||| |||||| |||||||| ||||||| ||   ||||||||||||||||||||||    
T  29094743 aagaagataatgtgagtatgagagagaagattgtacgaa---agttgtacaaatatcatttctc 29094803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 40118712 - 40118753
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaat 53  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  40118712 aagaagataatgtgagtatgagagagaaaattgtacaaaaat 40118753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 51080104 - 51080148
Alignment:
Q  29 attagagagaaaattgtacaaaaatagttgtacaaatatcatttct 74  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||    
T  51080104 attagagagaaagttgt-caaaaatagttgtacaaatatcatttct 51080148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 3826812 - 3826876
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||||||||| || ||| ||||| ||| ||||  |||| ||||||||||||||||||||||||    
T  3826812 aagaagataatgtgaatatgagagataaagttgttaaaaattagttgtacaaatatcatttctct 3826876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 40596051 - 40596115
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||| |||||| |||||| ||||||||| ||||   ||||| ||||||||||||||||||||||    
T  40596051 aagaatataatgtgagtatgagagagaaagttgtcacaaaatggttgtacaaatatcatttctct 40596115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 48256981 - 48256920
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||| || ||| ||||||||| ||||||  |||| |||||||||||||||||||||    
T  48256981 aagaagataatgtgaatatgagagagaaagttgtac--aaatggttgtacaaatatcatttctc 48256920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 41507191 - 41507254
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||| |||||| |||||| ||||||||| ||||   ||||| |||||||||||||||||||||    
T  41507191 aagaacataatgtgagtatgagagagaaagttgtcacaaaatggttgtacaaatatcatttctc 41507254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 77
Target Start/End: Original strand, 41564918 - 41564953
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||||| |||||||||||||||||||||||    
T  41564918 ttgtacaaaaatggttgtacaaatatcatttctcta 41564953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 43757656 - 43757597
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||| |||||| | ||||||| |||||  ||||| |||||||||||||||||||||||    
T  43757656 ataatgtgagtatgaaagagaaagttgtatcaaaatggttgtacaaatatcatttctcta 43757597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 45272162 - 45272221
Alignment:
Q  17 gataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    ||||||| |||||| ||||||||| ||||  |||| | ||||||||||||||||||||||    
T  45272162 gataatgtgagtatgagagagaaagttgtcaaaaagtggttgtacaaatatcatttctct 45272221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 78
Target Start/End: Complemental strand, 8905755 - 8905725
Alignment:
Q  48 aaaaatagttgtacaaatatcatttctctag 78  Q
    |||||||||||||||||||||||||||||||    
T  8905755 aaaaatagttgtacaaatatcatttctctag 8905725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 12990502 - 12990540
Alignment:
Q  37 gaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  12990502 gaaagttgtacaaaaatggttgtacaaatatcatttctc 12990540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 19427578 - 19427520
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||| ||||||  |||||||| |||||| ||||| |||||| |||||||||||||||    
T  19427578 ataatgtgagtatgtgagagaaagttgtaccaaaatggttgtataaatatcatttctct 19427520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 21446221 - 21446279
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||| |||||| ||||||||| |||||| |||||  ||||| |||||||||||||||    
T  21446221 ataatgtgagtatgagagagaaagttgtactaaaatgattgtataaatatcatttctct 21446279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 41425280 - 41425242
Alignment:
Q  37 gaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  41425280 gaaagttgtaccaaaatagttgtacaaatatcatttctc 41425242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 48325781 - 48325839
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||| |||||| ||| ||||||||||   ||||| ||||||||||||||||||||||    
T  48325781 ataatgtgagtatgagatagaaaattgtcacaaaatggttgtacaaatatcatttctct 48325839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 12972701 - 12972765
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctctagc 79  Q
    ||||||| |||| |||||| ||||||||  ||||| ||||   |||||||||||||||||||||||||    
T  12972701 aagaagaaaatgtgagtatgagagagaatgttgtataaaa---gttgtacaaatatcatttctctagc 12972765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 22331403 - 22331366
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  22331403 aaaattgtaccaaaatggttgtacaaatatcatttctc 22331366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 23472141 - 23472108
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctc 75  Q
    ||||| ||||||||||||||||||||||||||||    
T  23472141 ttgtataaaaatagttgtacaaatatcatttctc 23472108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 26760599 - 26760562
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  26760599 aaaattgtacaaaaatggttgtacaaatatcaattctc 26760562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 40139183 - 40139126
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||| |||||| ||||||||| ||||   ||||| |||||||||||||||||||||    
T  40139183 ataatgtgagtatgagagagaaagttgtcataaaatggttgtacaaatatcatttctc 40139126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 43105142 - 43105105
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  43105142 aaaattatacaaaaataattgtacaaatatcatttctc 43105105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 50796035 - 50796002
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctc 75  Q
    |||||||||| |||||||||||||||||||||||    
T  50796035 ttgtacaaaagtagttgtacaaatatcatttctc 50796002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 51718626 - 51718687
Alignment:
Q  15 aagataatgcgagtattagagagaaaattgt-acaaaaatagttgtacaaatatcatttctc 75  Q
    ||||||||| |||||| ||||||||| |||| | |||||| ||||| |||||||||||||||    
T  51718626 aagataatgtgagtatgagagagaaagttgtgaaaaaaatggttgttcaaatatcatttctc 51718687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 1689417 - 1689389
Alignment:
Q  49 aaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||||||||||||||||||||||    
T  1689417 aaaatagttgtacaaatatcatttctcta 1689389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 4618718 - 4618658
Alignment:
Q  12 aagaagataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcattt 72  Q
    ||||| |||||| |||||| ||||| |   |||||||||||| ||||||||||||||||||    
T  4618718 aagaatataatgtgagtatgagagatagggttgtacaaaaattgttgtacaaatatcattt 4618658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 77
Target Start/End: Original strand, 8577543 - 8577575
Alignment:
Q  45 tacaaaaatagttgtacaaatatcatttctcta 77  Q
    ||||||||| |||||||||||||||||||||||    
T  8577543 tacaaaaatggttgtacaaatatcatttctcta 8577575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 9337 - 9296
Alignment:
Q  32 agagagaaaattgtacaaaaatagttgtacaaatatcatttc 73  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  9337 agagagaaaattgtactaaaatagttgtacaaatatcatttc 9296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 31603 - 31661
Alignment:
Q  18 ataatgcgagtattagagagaaaattgtacaaaaatagttgtacaaatatcatttctct 76  Q
    |||||| |||||| ||||||||| ||||  |||||| ||||||||||||||||||||||    
T  31603 ataatgtgagtatgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctct 31661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0651 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 4880 - 4920
Alignment:
Q  38 aaaattgtacaaaaatagttgtacaaatatcatttctctag 78  Q
    |||||||||| ||||| ||||||||||||||||||||||||    
T  4880 aaaattgtaccaaaatggttgtacaaatatcatttctctag 4920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 145094 - 145059
Alignment:
Q  42 ttgtacaaaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||||| |||||||||||||||||||||||    
T  145094 ttgtacaaaaatggttgtacaaatatcatttctcta 145059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 1104 - 1076
Alignment:
Q  49 aaaatagttgtacaaatatcatttctcta 77  Q
    |||||||||||||||||||||||||||||    
T  1104 aaaatagttgtacaaatatcatttctcta 1076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 11207 - 11159
Alignment:
Q  26 agtattagagagaaaattgtacaaaaatagttgtacaaatatcatttct 74  Q
    ||||| ||||| ||| |||| ||||||| ||||||||||||||||||||    
T  11207 agtataagagataaagttgttcaaaaatggttgtacaaatatcatttct 11159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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