View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20177_high_15 (Length: 443)

Name: NF20177_high_15
Description: NF20177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20177_high_15
NF20177_high_15
[»] chr1 (2 HSPs)
chr1 (45-235)||(5928333-5928523)
chr1 (323-423)||(5928145-5928245)
[»] chr2 (1 HSPs)
chr2 (51-150)||(44174630-44174730)
[»] chr7 (1 HSPs)
chr7 (315-423)||(20087918-20088026)
[»] chr4 (6 HSPs)
chr4 (355-423)||(22714599-22714667)
chr4 (355-423)||(22990558-22990626)
chr4 (315-414)||(46956855-46956952)
chr4 (355-423)||(28948856-28948924)
chr4 (190-218)||(22714569-22714597)
chr4 (190-218)||(22990628-22990656)
[»] scaffold0009 (2 HSPs)
scaffold0009 (355-423)||(200472-200540)
scaffold0009 (190-218)||(200442-200470)


Alignment Details
Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 45 - 235
Target Start/End: Complemental strand, 5928523 - 5928333
Alignment:
Q  45 tgcatgagtctaggacatctatctattctcactgctaaaacaattgcaacatttgaatctgaatgaatccaagacattcttggcaaatgattcattctgg 144  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||  |||||||||||||||| |||||| ||     
T  5928523 tgcatgagtttaggacatctatctattctcactgctaaaacaattacaacatttgaatctgaaggaatccattacattcttggcaaatgcttcattatga 5928424  T
Q  145 tgcttaaacttgtctactcaaaccatcaacaatgtctcaatccataaacataagaaatcatggcattgcaaataactatgatcagaacaat 235  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5928423 tgcttaaacttgtctactcaaaccatcaacaatgtctcaatccacaaacataagaaatcatggcattgcaaataactatgatcagaacaat 5928333  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 323 - 423
Target Start/End: Complemental strand, 5928245 - 5928145
Alignment:
Q  323 aaaatatcagttaaaattgaaccaaaaaatggagcttatatagaactagttaaaactgaaatatagagcttatggaggataagtgaacaacaaatctgaa 422  Q
    |||||| ||||||||| ||||||||||||| ||||||||||||||| | ||||||||||||||||||| |||| ||||||||||| ||||||||||||||    
T  5928245 aaaataccagttaaaactgaaccaaaaaatagagcttatatagaaccacttaaaactgaaatatagagtttattgaggataagtgcacaacaaatctgaa 5928146  T
Q  423 g 423  Q
    |    
T  5928145 g 5928145  T

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Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 44174630 - 44174730
Alignment:
Q  51 agtctaggacatctatctattctcactgctaaaacaattgcaacatttgaatctgaatgaatccaagacattcttggc-aaatgattcattctggtgctt 149  Q
    |||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  44174630 agtctaagacatctatctattctcactgcttaaacaattacaacatttgaatctgaatgaatccaagacattcttggcaaaatggttcattctggtgctt 44174729  T
Q  150 a 150  Q
    |    
T  44174730 a 44174730  T

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Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 315 - 423
Target Start/End: Complemental strand, 20088026 - 20087918
Alignment:
Q  315 tcagagctaaaatatcagttaaaattgaaccaaaaaatggagcttatatagaactagttaaaactgaaatatagagcttatggaggataagtgaacaaca 414  Q
    ||||||| |||||| ||||||||| ||| ||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||    
T  20088026 tcagagccaaaataccagttaaaactgagccaaaaaatagagcttatatataaccagttaaaactgaaatatagagcttatggaggacaggtgaacaaca 20087927  T
Q  415 aatctgaag 423  Q
    |||||||||    
T  20087926 aatctgaag 20087918  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 355 - 423
Target Start/End: Original strand, 22714599 - 22714667
Alignment:
Q  355 agcttatatagaactagttaaaactgaaatatagagcttatggaggataagtgaacaacaaatctgaag 423  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  22714599 agcttatatataactagttaaaactgaaatatagagtttatggaggataagtgaacaacaaatccgaag 22714667  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 355 - 423
Target Start/End: Complemental strand, 22990626 - 22990558
Alignment:
Q  355 agcttatatagaactagttaaaactgaaatatagagcttatggaggataagtgaacaacaaatctgaag 423  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  22990626 agcttatatataactagttaaaactgaaatatagagtttatggaggataagtgaacaacaaatccgaag 22990558  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 315 - 414
Target Start/End: Complemental strand, 46956952 - 46956855
Alignment:
Q  315 tcagagctaaaatatcagttaaaattgaaccaaaaaatggagcttatatagaactagttaaaactgaaatatagagcttatggaggataagtgaacaaca 414  Q
    ||||||| |||||| ||||||||||||||||||||||| ||||||||| | ||| |||||||||||||  ||||||||||||||||||  ||||||||||    
T  46956952 tcagagccaaaataccagttaaaattgaaccaaaaaatagagcttatacataaccagttaaaactgaa--atagagcttatggaggatgggtgaacaaca 46956855  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 355 - 423
Target Start/End: Original strand, 28948856 - 28948924
Alignment:
Q  355 agcttatatagaactagttaaaactgaaatatagagcttatggaggataagtgaacaacaaatctgaag 423  Q
    |||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  28948856 agcttatatataactagttaaaactgaaatatagagtttaaggaggataagtgaacaacaaatccgaag 28948924  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 218
Target Start/End: Original strand, 22714569 - 22714597
Alignment:
Q  190 aaacataagaaatcatggcattgcaaata 218  Q
    |||||||||||||||||||||||||||||    
T  22714569 aaacataagaaatcatggcattgcaaata 22714597  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 218
Target Start/End: Complemental strand, 22990656 - 22990628
Alignment:
Q  190 aaacataagaaatcatggcattgcaaata 218  Q
    |||||||||||||||||||||||||||||    
T  22990656 aaacataagaaatcatggcattgcaaata 22990628  T

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Target: scaffold0009 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 355 - 423
Target Start/End: Original strand, 200472 - 200540
Alignment:
Q  355 agcttatatagaactagttaaaactgaaatatagagcttatggaggataagtgaacaacaaatctgaag 423  Q
    |||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  200472 agcttatatataactagttaaaactgaaatatatagtttatggaggataagtgaacaacaaatccgaag 200540  T

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Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 218
Target Start/End: Original strand, 200442 - 200470
Alignment:
Q  190 aaacataagaaatcatggcattgcaaata 218  Q
    |||||||||||||||||||||||||||||    
T  200442 aaacataagaaatcatggcattgcaaata 200470  T

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